Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Reverse (-)

8961740 .. 8962447

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1124100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATCCATTCTTCAGAAGGCATTGGCACAATTTCGCCCCACAACAACGGTACCCGCAGACCAATTTCGCGCCACAACATCAGAACCCGCAGAACGCGAGGCAAGTCCCGGTCCAGCGCCGAGCGGACCCGTCGCCGAAGGTGGTCTCAATCCCGGTCCACTACGTCGGGTCGGAGCGCAGCCGGTCGGATTCCGCGCTGAAAATCCAGAAGGCGTTCAGAGGGTTTATGGTGAGGAAAAGCGTGAGAAAGATCGCCGCCATCAGAGTCGAGGTCGGTGAGATCGAGAAGCGGACTTCGAAGCGAGAGGCGGTGGAATTGATGAGGAGGGACGCCAAGGAGCGGCTGAGGGTCAACGAGACGCTGATGAACTTGCTGTTGAAGTTGGATTCGGTGAAGGGCGTCGACTCTGGAGTTAGGGATCTCAGGAGGGCCGTGATAAAAAAGGCGATTGCTTTGCAGGAGAGAGTGGACAGCGCTGTTGCTGAAATTCCCCAAATCGACCAAACCCTAGAATTGCAATCCGAATCCCCTGTAAATTCGGATGAGACTCCGAATCTGCAGTCCTTGGAATTGGAATCGGCAGCCGAAGCCCACATCGAAACTGTTCCACACGGAAATGCGTGGGTATGCAGAGAGGAAGAAGGCGCTGTGAGGAAGAAGGCATGCTGCTGCGACTACAGATTTCGTGTCCAAGTACCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

236

Amino Acids

26.87

Weight (kDa)

9.59

Isoelectric Point (pI)

68.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	85 - 160	6.5e-12	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccBSI	CCGCTC	2 cut(s)	125, 343
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	3 cut(s)	71, 98, 197
AciI	CCGC	8 cut(s)	56, 89, 125, 195, 258, 292, 311, 343
AclWI	GGATC	2 cut(s)	12, 429
AcsI	RAATTY	2 cut(s)	489, 538
AcyI	GRCGYC	2 cut(s)	333, 402
AfaI	GTAC	2 cut(s)	53, 699
AfeI	AGCGCT	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	382
Alw26I	GTCTC	3 cut(s)	151, 353, 542
AlwI	GGATC	2 cut(s)	12, 429
Aor51HI	AGCGCT	1 cut(s)	478
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	4 cut(s)	180, 584, 669, 672
ApoI	RAATTY	2 cut(s)	489, 538
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
Asp700I	GAANNNNTTC	2 cut(s)	215, 606
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	6 cut(s)	73, 120, 180, 199, 479, 650
AspS9I	GGNCC	4 cut(s)	112, 127, 157, 432
AsuC2I	CCSGG	2 cut(s)	110, 155
AsuHPI	GGTGA	3 cut(s)	244, 290, 406
AsuII	TTCGAA	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	112, 127, 157
BaeI	ACNNNNGTAYC	2 cut(s)	35, 68
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	4 cut(s)	192, 596, 656, 659
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	419
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BcnI	CCSGG	2 cut(s)	110, 155
BcoDI	GTCTC	3 cut(s)	151, 353, 542
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	2 cut(s)	560, 679
BfoI	RGCGCY	3 cut(s)	121, 480, 651
BisI	GCNGC	6 cut(s)	181, 258, 344, 585, 670, 673
BlsI	GCNGC	6 cut(s)	182, 259, 345, 586, 671, 674
Bme1390I	CCNGG	2 cut(s)	110, 155
Bme18I	GGWCC	3 cut(s)	112, 127, 157
BmgT120I	GGNCC	4 cut(s)	112, 127, 157, 432
BmiI	GGNNCC	3 cut(s)	6, 53, 129
BmrFI	CCNGG	2 cut(s)	110, 155
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	299
BpuMI	CCSGG	2 cut(s)	110, 155
BsaHI	GRCGYC	2 cut(s)	333, 402
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	336, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	336, 567
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	338, 439
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	4 cut(s)	192, 596, 656, 659
Bsh1236I	CGCG	3 cut(s)	71, 98, 197
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	110, 155, 184
BslFI	GGGAC	2 cut(s)	92, 344
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	3 cut(s)	151, 353, 542
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	92, 344
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	151
Bsp119I	TTCGAA	1 cut(s)	299
Bsp143I	GATC	4 cut(s)	4, 252, 282, 421
BspACI	CCGC	8 cut(s)	56, 89, 125, 195, 258, 292, 311, 343
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	339, 438
BspFNI	CGCG	3 cut(s)	71, 98, 197
BspLI	GGNNCC	3 cut(s)	6, 53, 129
BspMAI	CTGCAG	1 cut(s)	564
BspPI	GGATC	2 cut(s)	12, 429
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	2 cut(s)	125, 343
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	336, 567
BssMI	GATC	4 cut(s)	4, 252, 282, 421
BssNI	GRCGYC	2 cut(s)	333, 402
BssT1I	CCWWGG	2 cut(s)	336, 567
Bst4CI	ACNGT	2 cut(s)	51, 607
BstACI	GRCGYC	2 cut(s)	333, 402
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	2 cut(s)	347, 425
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	3 cut(s)	71, 98, 197
BstH2I	RGCGCY	3 cut(s)	121, 480, 651
BstHHI	GCGC	6 cut(s)	73, 120, 180, 199, 479, 650
BstKTI	GATC	4 cut(s)	7, 255, 285, 424
BstMAI	GTCTC	3 cut(s)	151, 353, 542
BstMBI	GATC	4 cut(s)	4, 252, 282, 421
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	669
BstSCI	CCNGG	2 cut(s)	108, 153
BstSFI	CTRYAG	2 cut(s)	560, 679
BstUI	CGCG	3 cut(s)	71, 98, 197
BstV1I	GCAGC	4 cut(s)	192, 596, 656, 659
BstX2I	RGATCY	2 cut(s)	4, 421
BstYI	RGATCY	2 cut(s)	4, 421
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	667
CfoI	GCGC	6 cut(s)	73, 120, 180, 199, 479, 650
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	4 cut(s)	112, 127, 157, 432
CseI	GACGC	3 cut(s)	341, 370, 391
Csp6I	GTAC	2 cut(s)	52, 698
CviAII	CATG	1 cut(s)	666
CviJI	RGCY	5 cut(s)	183, 346, 434, 587, 593
CviKI_1	RGCY	5 cut(s)	183, 346, 434, 587, 593
CviQI	GTAC	2 cut(s)	52, 698
DdeI	CTNAG	2 cut(s)	347, 425
DpnI	GATC	4 cut(s)	6, 254, 284, 423
DpnII	GATC	4 cut(s)	4, 252, 282, 421
Eco130I	CCWWGG	2 cut(s)	336, 567
Eco31I	GGTCTC	1 cut(s)	151
Eco47I	GGWCC	3 cut(s)	112, 127, 157
Eco47III	AGCGCT	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	336, 567
ErhI	CCWWGG	2 cut(s)	336, 567
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	1 cut(s)	669
FaiI	YATR	3 cut(s)	230, 631, 667
FaqI	GGGAC	2 cut(s)	92, 344
FatI	CATG	1 cut(s)	665
FauI	CCCGC	2 cut(s)	63, 96
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	6 cut(s)	181, 258, 344, 585, 670, 673
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	6 cut(s)	181, 258, 344, 585, 670, 673
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	6 cut(s)	72, 119, 179, 198, 478, 649
GluI	GCNGC	6 cut(s)	181, 258, 344, 585, 670, 673
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	3 cut(s)	121, 480, 651
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	3 cut(s)	110, 155, 184
HgaI	GACGC	3 cut(s)	341, 370, 391
HhaI	GCGC	6 cut(s)	73, 120, 180, 199, 479, 650
Hin1I	GRCGYC	2 cut(s)	333, 402
Hin1II	CATG	1 cut(s)	669
Hin6I	GCGC	6 cut(s)	71, 118, 178, 197, 477, 648
HinP1I	GCGC	6 cut(s)	71, 118, 178, 197, 477, 648
HincII	GTYRAC	2 cut(s)	355, 406
HindII	GTYRAC	2 cut(s)	355, 406
HinfI	GANTC	8 cut(s)	191, 267, 389, 407, 527, 550, 556, 578
HpaII	CCGG	3 cut(s)	110, 155, 184
HphI	GGTGA	3 cut(s)	244, 290, 406
Hpy166II	GTNNAC	4 cut(s)	160, 355, 406, 472
Hpy188I	TCNGA	9 cut(s)	17, 84, 175, 190, 221, 266, 526, 544, 555
Hpy188III	TCNNGA	4 cut(s)	208, 286, 411, 427
Hpy8I	GTNNAC	4 cut(s)	160, 355, 406, 472
Hpy99I	CGWCG	3 cut(s)	136, 170, 407
HpyAV	CCTTC	6 cut(s)	12, 133, 205, 391, 638, 655
HpyCH4III	ACNGT	2 cut(s)	51, 607
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	460, 520, 562, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	2 cut(s)	347, 425
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	2 cut(s)	333, 402
Hsp92II	CATG	1 cut(s)	669
HspAI	GCGC	6 cut(s)	71, 118, 178, 197, 477, 648
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	4, 252, 282, 421
LmnI	GCTCC	2 cut(s)	175, 340
LpnPI	CCDG	9 cut(s)	123, 128, 168, 197, 221, 396, 412, 446, 546
Lsp1109I	GCAGC	4 cut(s)	192, 596, 656, 659
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	165
MalI	GATC	4 cut(s)	6, 254, 284, 423
MbiI	CCGCTC	2 cut(s)	125, 343
MboI	GATC	4 cut(s)	4, 252, 282, 421
MboII	GAAGA	3 cut(s)	4, 653, 670
MflI	RGATCY	2 cut(s)	4, 421
MluCI	AATT	7 cut(s)	31, 64, 317, 489, 515, 538, 572
MlyI	GAGTC	3 cut(s)	276, 401, 544
MmeI	TCCRAC	3 cut(s)	153, 168, 366
MroXI	GAANNNNTTC	2 cut(s)	215, 606
MseI	TTAA	1 cut(s)	706
MslI	CAYNNNNRTG	1 cut(s)	618
MspI	CCGG	3 cut(s)	110, 155, 184
MspR9I	CCNGG	2 cut(s)	110, 155
MvnI	CGCG	3 cut(s)	71, 98, 197
MwoI	GCNNNNNNNGC	1 cut(s)	590
NciI	CCSGG	2 cut(s)	110, 155
NdeII	GATC	4 cut(s)	4, 252, 282, 421
NlaIII	CATG	1 cut(s)	669
NlaIV	GGNNCC	3 cut(s)	6, 53, 129
NmeAIII	GCCGAG	1 cut(s)	146
NspI	RCATGY	1 cut(s)	669
NspV	TTCGAA	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdmI	GAANNNNTTC	2 cut(s)	215, 606
PfeI	GAWTC	5 cut(s)	191, 389, 527, 556, 578
PkrI	GCNGC	6 cut(s)	182, 259, 345, 586, 671, 674
PleI	GAGTC	3 cut(s)	275, 401, 544
PpsI	GAGTC	3 cut(s)	275, 401, 544
PspN4I	GGNNCC	3 cut(s)	6, 53, 129
PspPI	GGNCC	4 cut(s)	112, 127, 157, 432
PstI	CTGCAG	1 cut(s)	564
PsuI	RGATCY	2 cut(s)	4, 421
RsaI	GTAC	2 cut(s)	53, 699
RsaNI	GTAC	2 cut(s)	52, 698
RseI	CAYNNNNRTG	1 cut(s)	618
SalI	GTCGAC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	706
SatI	GCNGC	6 cut(s)	181, 258, 344, 585, 670, 673
Sau3AI	GATC	4 cut(s)	4, 252, 282, 421
Sau96I	GGNCC	4 cut(s)	112, 127, 157, 432
SchI	GAGTC	3 cut(s)	276, 401, 544
ScrFI	CCNGG	2 cut(s)	110, 155
SetI	ASST	3 cut(s)	144, 168, 276
SfcI	CTRYAG	2 cut(s)	560, 679
SfuI	TTCGAA	1 cut(s)	299
SinI	GGWCC	3 cut(s)	112, 127, 157
SmiMI	CAYNNNNRTG	1 cut(s)	618
SphI	GCATGC	1 cut(s)	669
Sse9I	AATT	7 cut(s)	31, 64, 317, 489, 515, 538, 572
SsiI	CCGC	8 cut(s)	56, 89, 125, 195, 258, 292, 311, 343
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	108, 153
StyI	CCWWGG	2 cut(s)	336, 567
TaaI	ACNGT	2 cut(s)	51, 607
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	6 cut(s)	270, 285, 299, 405, 501, 600
TasI	AATT	7 cut(s)	31, 64, 317, 489, 515, 538, 572
TauI	GCSGC	2 cut(s)	260, 346
TfiI	GAWTC	5 cut(s)	191, 389, 527, 556, 578
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TseI	GCWGC	4 cut(s)	180, 584, 669, 672
TspDTI	ATGAA	1 cut(s)	383
TspGWI	ACGGA	1 cut(s)	630
VpaK11BI	GGWCC	3 cut(s)	112, 127, 157
XapI	RAATTY	2 cut(s)	489, 538
XceI	RCATGY	1 cut(s)	669
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	2 cut(s)	215, 606
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.