Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Forward (+)

60802229 .. 60804873

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCAGATTATCGTGAGTATGGTAGCGCTGTTGTATCACACAGGGATCATCAACATAATTAGCAATCGGTTTGCCCGACCATTGGTGGTGGGCTCCATGGCACACGGGCCTGCTGCCAACAGTTTTTTTTTTTTTTTTTTACTGATCTTATATGATAACACACAAACCATTTCAACATCAAGTGAAAGCCCAAGTGAAATGGTTTGCGGCCTCTACAAGACAATCGCGGCGGTCCATTCCGAGGACGACCAGTTCCAACGCCTGATCCAACGCGTGCGGGGGAAGCTGAGGATGAACGAGGCGCTGATGAAGTTGCTACTGAGTTTGGACTCTGTGCCCGGGGTGGACCCCACAGTGAGGGAGGCAAGGAGGAAGGTGAGCCGTCAGATCGTGGACGCGATTGTTCAGGAAGACGTGGAGGGGTTCTTGGGTGGGTGCGGTGGCGGGTTTGGGAGGGACTACTGGAACGACGTCGTGGCGAAGATGGAGGAGGGGGTGGTTTTTGCTGAGTATTTGGGGTTTCGCTGCCGAAAATTTCCAATCCAGATCCGAGAGAGAGAGAGAGAGAGAGAATTAATTAATAGGGGCAAAATTGTCAGTAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

202

Amino Acids

22.91

Weight (kDa)

8.82

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	79 - 133	2.4e-08	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	474
AccII	CGCG	3 cut(s)	227, 273, 398
AciI	CCGC	6 cut(s)	207, 227, 230, 277, 438, 444
AclWI	GGATC	3 cut(s)	53, 259, 541
AcsI	RAATTY	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	471
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	82, 241, 357
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
AlwI	GGATC	3 cut(s)	53, 259, 541
Ama87I	CYCGRG	1 cut(s)	338
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	2 cut(s)	107, 208
ApeKI	GCWGC	2 cut(s)	113, 525
ApoI	RAATTY	1 cut(s)	533
AseI	ATTAAT	2 cut(s)	575, 579
AspLEI	GCGC	2 cut(s)	28, 304
AspS9I	GGNCC	3 cut(s)	107, 232, 346
AsuC2I	CCSGG	2 cut(s)	339, 340
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	232, 346
BaeGI	GKGCMC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	100, 512
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	366
BcnI	CCSGG	2 cut(s)	339, 340
BfoI	RGCGCY	2 cut(s)	29, 305
BisI	GCNGC	4 cut(s)	114, 208, 228, 526
BlsI	GCNGC	4 cut(s)	115, 209, 229, 527
Bme1390I	CCNGG	2 cut(s)	339, 340
Bme18I	GGWCC	2 cut(s)	232, 346
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	3 cut(s)	107, 232, 346
BmiI	GGNNCC	2 cut(s)	94, 348
BmrFI	CCNGG	2 cut(s)	339, 340
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	339, 340
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	4 cut(s)	96, 240, 338, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 241, 357
Bse1I	ACTGG	2 cut(s)	250, 467
BseDI	CCNNGG	4 cut(s)	96, 240, 338, 339
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	82, 241, 357
BseMII	CTCAG	3 cut(s)	278, 311, 498
BseNI	ACTGG	2 cut(s)	250, 467
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	100, 512
Bsh1236I	CGCG	3 cut(s)	227, 273, 398
BshFI	GGCC	2 cut(s)	109, 210
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	82, 241, 357
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	109, 210
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	95, 339
Bsp143I	GATC	5 cut(s)	45, 144, 264, 387, 546
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	6 cut(s)	207, 227, 230, 277, 438, 444
BspANI	GGCC	2 cut(s)	109, 210
BspCNI	CTCAG	3 cut(s)	279, 312, 499
BspFNI	CGCG	3 cut(s)	227, 273, 398
BspLI	GGNNCC	2 cut(s)	94, 348
BspPI	GGATC	3 cut(s)	53, 259, 541
BsrI	ACTGG	2 cut(s)	250, 467
BssECI	CCNNGG	4 cut(s)	96, 240, 338, 339
BssMI	GATC	5 cut(s)	45, 144, 264, 387, 546
BssNI	GRCGYC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	122, 355
BstACI	GRCGYC	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	111, 275
BstDEI	CTNAG	3 cut(s)	287, 320, 507
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	3 cut(s)	227, 273, 398
BstH2I	RGCGCY	2 cut(s)	29, 305
BstHHI	GCGC	2 cut(s)	28, 304
BstKTI	GATC	5 cut(s)	48, 147, 267, 390, 549
BstMBI	GATC	5 cut(s)	45, 144, 264, 387, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	337, 338
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	3 cut(s)	227, 273, 398
BstV1I	GCAGC	2 cut(s)	100, 512
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	109, 210
BtgI	CCRYGG	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	111, 275
CfoI	GCGC	2 cut(s)	28, 304
Cfr13I	GGNCC	3 cut(s)	107, 232, 346
Cfr9I	CCCGGG	1 cut(s)	338
CseI	GACGC	1 cut(s)	404
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	6 cut(s)	93, 109, 189, 210, 286, 381
CviKI_1	RGCY	6 cut(s)	93, 109, 189, 210, 286, 381
DdeI	CTNAG	3 cut(s)	287, 320, 507
DpnI	GATC	5 cut(s)	47, 146, 266, 389, 548
DpnII	GATC	5 cut(s)	45, 144, 264, 387, 546
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	232, 346
Eco47III	AGCGCT	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	100
FaiI	YATR	5 cut(s)	20, 56, 98, 151, 153
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	96
FauI	CCCGC	2 cut(s)	270, 437
Fnu4HI	GCNGC	4 cut(s)	114, 208, 228, 526
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	4 cut(s)	114, 208, 228, 526
GlaI	GCGC	2 cut(s)	27, 303
GluI	GCNGC	4 cut(s)	114, 208, 228, 526
HaeII	RGCGCY	2 cut(s)	29, 305
HaeIII	GGCC	2 cut(s)	109, 210
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	2 cut(s)	28, 304
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	2 cut(s)	26, 302
HinP1I	GCGC	2 cut(s)	26, 302
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	2 cut(s)	346, 394
Hpy188I	TCNGA	3 cut(s)	241, 387, 551
Hpy188III	TCNNGA	3 cut(s)	13, 407, 544
Hpy8I	GTNNAC	2 cut(s)	346, 394
Hpy99I	CGWCG	2 cut(s)	473, 476
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	2 cut(s)	122, 355
HpyCH4IV	ACGT	2 cut(s)	414, 471
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	3 cut(s)	287, 320, 507
HpySE526I	ACGT	2 cut(s)	414, 471
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	2 cut(s)	26, 302
Kzo9I	GATC	5 cut(s)	45, 144, 264, 387, 546
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	8 cut(s)	27, 123, 263, 275, 352, 392, 448, 557
Lsp1109I	GCAGC	2 cut(s)	100, 512
MaeII	ACGT	2 cut(s)	414, 471
MalI	GATC	5 cut(s)	47, 146, 266, 389, 548
MboI	GATC	5 cut(s)	45, 144, 264, 387, 546
MboII	GAAGA	2 cut(s)	422, 493
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	2 cut(s)	95, 339
MluCI	AATT	5 cut(s)	57, 533, 572, 576, 591
MluI	ACGCGT	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	280, 292
MseI	TTAA	2 cut(s)	575, 579
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	339, 340
MvnI	CGCG	3 cut(s)	227, 273, 398
MwoI	GCNNNNNNNGC	1 cut(s)	283
NciI	CCSGG	2 cut(s)	339, 340
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	5 cut(s)	45, 144, 264, 387, 546
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	94, 348
PacI	TTAATTAA	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PkrI	GCNGC	4 cut(s)	115, 209, 229, 527
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PshBI	ATTAAT	2 cut(s)	575, 579
PspN4I	GGNNCC	2 cut(s)	94, 348
PspPI	GGNCC	3 cut(s)	107, 232, 346
PsuI	RGATCY	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	575, 579
SatI	GCNGC	4 cut(s)	114, 208, 228, 526
Sau3AI	GATC	5 cut(s)	45, 144, 264, 387, 546
Sau96I	GGNCC	3 cut(s)	107, 232, 346
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	339, 340
SduI	GDGCHC	2 cut(s)	95, 339
SetI	ASST	4 cut(s)	288, 378, 417, 474
SinI	GGWCC	2 cut(s)	232, 346
SmaI	CCCGGG	1 cut(s)	340
Sse9I	AATT	5 cut(s)	57, 533, 572, 576, 591
SsiI	CCGC	6 cut(s)	207, 227, 230, 277, 438, 444
StyD4I	CCNGG	2 cut(s)	337, 338
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	122, 355
TaiI	ACGT	2 cut(s)	417, 474
TasI	AATT	5 cut(s)	57, 533, 572, 576, 591
TauI	GCSGC	2 cut(s)	210, 230
Tru1I	TTAA	2 cut(s)	575, 579
Tru9I	TTAA	2 cut(s)	575, 579
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	113, 525
TspDTI	ATGAA	2 cut(s)	308, 323
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	2 cut(s)	232, 346
VspI	ATTAAT	2 cut(s)	575, 579
XapI	RAATTY	1 cut(s)	533
XmaI	CCCGGG	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.