Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Reverse (-)

536472 .. 537133

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G011000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAACCCTCTCGCAGTCGCAGGCTCAGCTTCTCCTCCTCCTCCTCTTCTACCACCACCGTCACCTACACTCTCCACAATGAACAACCTGCCCCTCCCACCGCCACCGAAATTCCCATCCAGTCCTCTGCTACCCCAATTCCCATCACCGTTCACGTACCCCAATCCACCGCAGCCATCAAAATTCAATCCGCCTACCGGGCCCACCTCATCCGCACTCTCTATAAAACAATCGCAGCCGTGCATTCCGAGGCCGACGAGTTCCAGCGCCTGATTCAACGGCAGGAAACGGTCGACGCCGTGAGGAGCAGCGAGCGCGAGAAGCTGAGGATGAACGAGGCGCTGATGAGGTTGCTGCTGAAGCTGGACTCCGTTCGTGGGGTGGACCCCGCAGTGAGAGAAGCGAGAAGAAAAGTGAGCCGTCGGATCGTGGGGTTGCAGGAGATCGTAGACGCGATTGTTTCAGAAGATGTTGATGGCTTTTGGGGATGTGGAGATGCTGGGTTTGTGAGGAACTGGGACGACGTCGTTGCGGAGATGGAGGAGGGTGTGTGCAGGGAGAGAGGGGGTGAGGAGATGGAGAGGTTTTGTGCTCAGTATCTGGGTTTTCGCTGCTTACAGAGGTTTCTGCGCGAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

214

Amino Acids

24.07

Weight (kDa)

7.71

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	528
Acc36I	ACCTGC	1 cut(s)	97
AccI	GTMKAC	2 cut(s)	294, 450
AccII	CGCG	3 cut(s)	318, 455, 633
AciI	CCGC	6 cut(s)	102, 171, 192, 214, 390, 533
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	111, 183
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	2 cut(s)	297, 525
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	198, 378
AgsI	TTSAA	2 cut(s)	188, 278
AluBI	AGCT	3 cut(s)	30, 325, 364
AluI	AGCT	3 cut(s)	30, 325, 364
Alw21I	GWGCWC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	2 cut(s)	271, 601
AoxI	GGCC	2 cut(s)	201, 252
ApaI	GGGCCC	1 cut(s)	205
ApeKI	GCWGC	5 cut(s)	173, 236, 309, 355, 612
ApoI	RAATTY	2 cut(s)	111, 183
AspLEI	GCGC	4 cut(s)	270, 318, 343, 633
AspS9I	GGNCC	3 cut(s)	201, 202, 385
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	55, 139, 581
AvaII	GGWCC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	595
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	5 cut(s)	185, 248, 321, 342, 599
BccI	CCATC	6 cut(s)	125, 152, 185, 470, 532, 571
BceAI	ACGGC	5 cut(s)	224, 284, 296, 405, 622
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BcnI	CCSGG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	271, 344
BfuAI	ACCTGC	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	5 cut(s)	174, 237, 310, 356, 613
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	5 cut(s)	175, 238, 311, 357, 614
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	3 cut(s)	201, 202, 385
BmiI	GGNNCC	2 cut(s)	203, 387
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	526
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	157
BsaHI	GRCGYC	2 cut(s)	297, 525
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 378
Bse1I	ACTGG	2 cut(s)	121, 521
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	4 cut(s)	117, 210, 336, 494
BseLI	CCNNNNNNNGG	2 cut(s)	198, 378
BseMII	CTCAG	3 cut(s)	40, 317, 608
BseNI	ACTGG	2 cut(s)	121, 521
BseRI	GAGGAG	7 cut(s)	25, 28, 31, 34, 319, 557, 587
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	185, 248, 321, 342, 599
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	574
Bsh1236I	CGCG	3 cut(s)	318, 455, 633
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	203, 254
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	198, 378
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	203, 254
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	205, 595
Bsp143I	GATC	2 cut(s)	426, 444
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	6 cut(s)	102, 171, 192, 214, 390, 533
BspANI	GGCC	2 cut(s)	203, 254
BspCNI	CTCAG	3 cut(s)	39, 318, 607
BspFNI	CGCG	3 cut(s)	318, 455, 633
BspLI	GGNNCC	2 cut(s)	203, 387
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	121, 521
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	426, 444
BssNI	GRCGYC	2 cut(s)	297, 525
Bst4CI	ACNGT	3 cut(s)	61, 151, 292
Bst6I	CTCTTC	1 cut(s)	52
BstACI	GRCGYC	2 cut(s)	297, 525
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	23, 314, 635
BstDEI	CTNAG	3 cut(s)	26, 326, 594
BstF5I	GGATG	4 cut(s)	117, 210, 336, 494
BstFNI	CGCG	3 cut(s)	318, 455, 633
BstH2I	RGCGCY	2 cut(s)	271, 344
BstHHI	GCGC	4 cut(s)	270, 318, 343, 633
BstKTI	GATC	2 cut(s)	429, 447
BstMBI	GATC	2 cut(s)	426, 444
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 200, 315, 322, 361
BstSCI	CCNGG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	3 cut(s)	318, 455, 633
BstV1I	GCAGC	5 cut(s)	185, 248, 321, 342, 599
BsuRI	GGCC	2 cut(s)	203, 254
BtsCI	GGATG	4 cut(s)	117, 210, 336, 494
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	3 cut(s)	23, 314, 635
CaiI	CAGNNNCTG	2 cut(s)	271, 601
CfoI	GCGC	4 cut(s)	270, 318, 343, 633
Cfr13I	GGNCC	3 cut(s)	201, 202, 385
CseI	GACGC	2 cut(s)	305, 461
Csp6I	GTAC	1 cut(s)	158
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	3 cut(s)	26, 326, 594
DpnI	GATC	2 cut(s)	428, 446
DpnII	GATC	2 cut(s)	426, 444
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	205
FaiI	YATR	1 cut(s)	225
FaqI	GGGAC	1 cut(s)	533
FauI	CCCGC	1 cut(s)	397
FblI	GTMKAC	2 cut(s)	294, 450
Fnu4HI	GCNGC	5 cut(s)	174, 237, 310, 356, 613
FokI	GGATG	4 cut(s)	104, 197, 343, 501
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	5 cut(s)	174, 237, 310, 356, 613
GlaI	GCGC	4 cut(s)	269, 317, 342, 632
GluI	GCNGC	5 cut(s)	174, 237, 310, 356, 613
GsaI	CCCAGC	1 cut(s)	504
HaeII	RGCGCY	2 cut(s)	271, 344
HaeIII	GGCC	2 cut(s)	203, 254
HapII	CCGG	1 cut(s)	199
HgaI	GACGC	2 cut(s)	305, 461
HhaI	GCGC	4 cut(s)	270, 318, 343, 633
Hin1I	GRCGYC	2 cut(s)	297, 525
Hin6I	GCGC	4 cut(s)	268, 316, 341, 631
HinP1I	GCGC	4 cut(s)	268, 316, 341, 631
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	274, 368
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	3 cut(s)	55, 139, 581
Hpy166II	GTNNAC	4 cut(s)	154, 295, 385, 451
Hpy188I	TCNGA	3 cut(s)	250, 426, 466
Hpy8I	GTNNAC	4 cut(s)	154, 295, 385, 451
Hpy99I	CGWCG	5 cut(s)	260, 299, 426, 527, 530
HpyCH4III	ACNGT	3 cut(s)	61, 151, 292
HpyCH4IV	ACGT	2 cut(s)	156, 525
HpyCH4V	TGCA	3 cut(s)	244, 439, 555
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 200, 315, 322, 361
HpyF3I	CTNAG	3 cut(s)	26, 326, 594
HpySE526I	ACGT	2 cut(s)	156, 525
Hsp92I	GRCGYC	2 cut(s)	297, 525
HspAI	GCGC	4 cut(s)	268, 316, 341, 631
Kzo9I	GATC	2 cut(s)	426, 444
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	5 cut(s)	185, 248, 321, 342, 599
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	2 cut(s)	156, 525
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	428, 446
MboI	GATC	2 cut(s)	426, 444
MboII	GAAGA	3 cut(s)	39, 420, 479
MhlI	GDGCHC	2 cut(s)	205, 595
MluCI	AATT	3 cut(s)	111, 138, 183
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	404
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	244
MvnI	CGCG	3 cut(s)	318, 455, 633
MwoI	GCNNNNNNNGC	5 cut(s)	27, 200, 315, 322, 361
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	426, 444
NlaIV	GGNNCC	2 cut(s)	203, 387
NmuCI	GTSAC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	274
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	5 cut(s)	175, 238, 311, 357, 614
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	203, 387
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	3 cut(s)	201, 202, 385
PstNI	CAGNNNCTG	2 cut(s)	271, 601
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	5 cut(s)	174, 237, 310, 356, 613
Sau3AI	GATC	2 cut(s)	426, 444
Sau96I	GGNCC	3 cut(s)	201, 202, 385
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	205, 595
SfaNI	GCATC	1 cut(s)	487
SinI	GGWCC	1 cut(s)	385
Sse9I	AATT	3 cut(s)	111, 138, 183
SsiI	CCGC	6 cut(s)	102, 171, 192, 214, 390, 533
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	61, 151, 292
TaiI	ACGT	2 cut(s)	159, 528
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	111, 138, 183
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	5 cut(s)	173, 236, 309, 355, 612
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	17, 96, 347
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	2 cut(s)	111, 183
XmiI	GTMKAC	2 cut(s)	294, 450
ZraI	GACGTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.