Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Forward (+)

38677134 .. 38679062

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG216300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTTTGCGGCATCTACAAGACAATCGCGGACGTCCATTACGAGGTCGACGAGTTCCAGCGCCTGATCCAACGACAGGAGACGGTCGACACTGTGAGGAGTAGCGTGTGGGAGAAGCTGAGGATGAACGATGAGCTGATGAAGTTGCTATTGAGTTTGGACTCCGTGCCGGGGGTGGACCCCACAATGAGAGAGGCAAGGAGGAAGAACCCATTCCTCTCTCAATCTCCACACCCTTCATCTTCCATCAACTTTTGCCACTCTCTGCTTTTCTGCTCAGTGAAAAAGCTGCTTCTTGCTTCACCTAACTATAAAGTACAAGAATTTCTGCATCAAAGGGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

8.51

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	9 - 69	3.6e-08	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
AccI	GTMKAC	2 cut(s)	48, 87
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	9, 29
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	3 cut(s)	43, 76, 171
AluBI	AGCT	3 cut(s)	118, 136, 289
AluI	AGCT	3 cut(s)	118, 136, 289
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	61
AlwNI	CAGNNNCTG	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	2 cut(s)	10, 290
BlsI	GCNGC	2 cut(s)	11, 291
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	2 cut(s)	21, 340
Bpu10I	CCTNAGC	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 76, 171
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	43, 76, 171
BseMII	CTCAG	2 cut(s)	110, 291
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	43, 76, 171
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	9, 29
BspCNI	CTCAG	2 cut(s)	111, 290
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	85, 94
BstACI	GRCGYC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	119, 277
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	66
BstMCI	CGRYCG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	90, 285
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	317
CviJI	RGCY	3 cut(s)	118, 136, 289
CviKI_1	RGCY	3 cut(s)	118, 136, 289
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	119, 277
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	74
FaiI	YATR	1 cut(s)	312
FalI	AAGNNNNNCTT	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	48, 87
Fnu4HI	GCNGC	2 cut(s)	10, 290
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	10, 290
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	10, 290
HaeII	RGCGCY	1 cut(s)	64
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	2 cut(s)	49, 88
HindII	GTYRAC	2 cut(s)	49, 88
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	3 cut(s)	49, 88, 178
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	3 cut(s)	49, 88, 178
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	85, 94
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	331
HpyF3I	CTNAG	2 cut(s)	119, 277
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	62, 71, 77, 183
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	21, 340
MaeII	ACGT	1 cut(s)	33
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	2 cut(s)	217, 234
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	37, 90, 114, 187, 195, 227
MroXI	GAANNNNTTC	1 cut(s)	212
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	29
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 48
PdmI	GAANNNNTTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	11, 291
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SalI	GTCGAC	2 cut(s)	47, 86
SatI	GCNGC	2 cut(s)	10, 290
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	6 cut(s)	36, 48, 120, 138, 291, 307
SfaNI	GCATC	2 cut(s)	21, 340
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	2 cut(s)	9, 29
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	85, 94
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	48, 87
TasI	AATT	1 cut(s)	323
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	12
TscAI	CASTG	2 cut(s)	97, 285
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	140, 155, 228
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	97, 285
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	323
XmiI	GTMKAC	2 cut(s)	48, 87
XmnI	GAANNNNTTC	1 cut(s)	212
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.