Rroxscaffold_3G00244040

Fumarylacetoacetase N-terminal

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
36457448 .. 36461518
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244040.1

Sequence Viewer

Length: 381 bp
ATGGAGGAGGGGGTGTGTAGGGAGAGAAGAGGTGAGGAAATGGAGAGGTTTTCTGCTGAGTATTTGGAGTTTCGCTGTCGAAAATTTCCAATCAAGATCCATGAGAGAGAAAGAGAGTTAATTAATAGGGGCAAAACTAAACCAGTCAACAAGAGGGAGATCAATTGCAATGACAAATTGAAGGAGTTTTTTGAAAGGAAGGAAAAGGAAACTAGTACAGTTGTGGCAAAATTGACTAAGGATAGGCTGACAAATTCCAAGATGGAGATGATGATGATGAGGATTGAACATAAAGGCAAGCCGCTTGCTATGGATATGCCTGACATGACATATTCTGAAATGATTATGTATGAGGAGATCGAGTCTACTCCAGATTCCTGA

Protein Analysis

126

Amino Acids

15.24

Weight (kDa)

6.77

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 365
AciI CCGC 1 cut(s) 302
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 2 cut(s) 83, 253
AfaI GTAC 1 cut(s) 217
AgsI TTSAA 3 cut(s) 181, 194, 287
AhlI ACTAGT 1 cut(s) 212
AlwI GGATC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 83, 253
AseI ATTAAT 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 44
BccI CCATC 1 cut(s) 256
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 354
BsaXI ACNNNNNCTCC 3 cut(s) 29, 347, 377
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 20, 368
Bsp143I GATC 3 cut(s) 96, 159, 357
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 49
BspPI GGATC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 143
BssMI GATC 3 cut(s) 96, 159, 357
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 299, 306
BstDEI CTNAG 2 cut(s) 57, 237
BstKTI GATC 3 cut(s) 99, 162, 360
BstMBI GATC 3 cut(s) 96, 159, 357
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 299, 306
Csp6I GTAC 1 cut(s) 216
CviAII CATG 2 cut(s) 101, 325
CviJI RGCY 2 cut(s) 247, 301
CviKI_1 RGCY 2 cut(s) 247, 301
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 2 cut(s) 57, 237
DpnI GATC 3 cut(s) 98, 161, 359
DpnII GATC 3 cut(s) 96, 159, 357
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
FaeI CATG 2 cut(s) 104, 328
FaiI YATR 8 cut(s) 102, 291, 311, 317, 326, 331, 347, 351
FatI CATG 2 cut(s) 100, 324
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 354
Hin1II CATG 2 cut(s) 104, 328
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 362, 374
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 148, 366
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 94, 371, 378
Hpy8I GTNNAC 2 cut(s) 148, 366
HpyAV CCTTC 2 cut(s) 175, 193
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 57, 237
Hsp92II CATG 2 cut(s) 104, 328
Kzo9I GATC 3 cut(s) 96, 159, 357
LpnPI CCDG 2 cut(s) 156, 333
MaeI CTAG 1 cut(s) 213
MalI GATC 3 cut(s) 98, 161, 359
MboI GATC 3 cut(s) 96, 159, 357
MboII GAAGA 1 cut(s) 39
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 1 cut(s) 96
MluCI AATT 6 cut(s) 83, 120, 163, 176, 230, 253
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 6 cut(s) 23, 28, 39, 147, 273, 346
MseI TTAA 2 cut(s) 119, 123
MunI CAATTG 1 cut(s) 163
NdeII GATC 3 cut(s) 96, 159, 357
NlaIII CATG 2 cut(s) 104, 328
PacI TTAATTAA 1 cut(s) 123
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 123
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 119, 123
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 3 cut(s) 96, 159, 357
SchI GAGTC 1 cut(s) 371
SetI ASST 2 cut(s) 34, 50
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 6 cut(s) 83, 120, 163, 176, 230, 253
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 79, 360
TasI AATT 6 cut(s) 83, 120, 163, 176, 230, 253
TatI WGTACW 1 cut(s) 215
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 119, 123
Tru9I TTAA 2 cut(s) 119, 123
VspI ATTAAT 1 cut(s) 123
XapI RAATTY 2 cut(s) 83, 253
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.