Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Reverse (-)

800705 .. 801322

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAACCCTCTCACCGCCGCAGACTCAGCTTCTCCTCCACCGCCACCGTCACCTACACTCTCCGCAATGACCAACCTGCCCCTCCCACCTCCACCCAGAACCCCACCCCGATTCCGATCACCGTACACGTACCGCAGTCCGCCGCCGCCGTCAAAATCCAATCGGCCTACCGGAGCCACCTGATCCGCAGCCTCTACAAGACAATCGCGGCCGTCCATTCCGAGGCCGACGAGTTCCAGCGCCTGATCCAACGGCAGGAGACGGTCGACGCCGTGAGGAGCAGCGAGCGGGAGAAGCTGAGGATGAACGAGGCGCTGATGAAGTTGCTACTGAGATTGGACTCTGTGCCCGGGGTGGACCCCACAGTGAGGGAGGCGAGAAGGAAGGTGAGCCGTCGGATCGTGGGGCTGCAGGAGATCGTGGACGCGATTGTTCAGGAAGACGTGGAGGGGTTCTGGGGTGGGTGCGGCGGTGGGTTTGGGAGGGACTACTGGAACGACGTCGTGGCGGAGATGGAGGAGGGGGTGTGTAGGGAGAGAGGAGGTGAGGAAATGGAGAGGTTCTGTGCTGAGTATTTGGGGTTTCGCTGCTTACAGAGGTTTCTGAGTCAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

205

Amino Acids

23.24

Weight (kDa)

8.39

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	69 - 143	3.4e-15	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	2 cut(s)	209, 428
AclWI	GGATC	3 cut(s)	178, 241, 407
AcoI	YGGCCR	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	270, 501
AfaI	GTAC	2 cut(s)	126, 132
AfiI	CCNNNNNNNGG	3 cut(s)	223, 256, 369
AflIII	ACRYGT	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	445
AluBI	AGCT	2 cut(s)	30, 298
AluI	AGCT	2 cut(s)	30, 298
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	178, 241, 407
AlwNI	CAGNNNCTG	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	165, 210, 225
ApeKI	GCWGC	4 cut(s)	189, 282, 409, 588
AspLEI	GCGC	2 cut(s)	243, 316
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	351, 352
AsuHPI	GGTGA	5 cut(s)	5, 43, 112, 400, 557
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	201, 294, 396, 575
BccI	CCATC	1 cut(s)	508
BceAI	ACGGC	6 cut(s)	134, 197, 257, 269, 378, 598
BcnI	CCSGG	2 cut(s)	351, 352
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	2 cut(s)	244, 317
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	9 cut(s)	19, 144, 147, 190, 210, 283, 410, 469, 589
BlsI	GCNGC	9 cut(s)	20, 145, 148, 191, 211, 284, 411, 470, 590
Bme1390I	CCNGG	2 cut(s)	351, 352
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	176, 360
BmrFI	CCNGG	2 cut(s)	351, 352
BpiI	GAAGAC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	299
BpuMI	CCSGG	2 cut(s)	351, 352
BsaAI	YACGTR	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	116
BsaHI	GRCGYC	2 cut(s)	270, 501
BsaJI	CCNNGG	3 cut(s)	222, 350, 351
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 256, 369
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	222, 350, 351
BseGI	GGATG	1 cut(s)	309
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	3 cut(s)	223, 256, 369
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	5 cut(s)	40, 290, 323, 561, 596
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	4 cut(s)	25, 292, 533, 555
BseSI	GKGCMC	1 cut(s)	351
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	4 cut(s)	201, 294, 396, 575
Bsh1236I	CGCG	2 cut(s)	209, 428
Bsh1285I	CGRYCG	2 cut(s)	213, 267
BshFI	GGCC	3 cut(s)	167, 212, 227
BsiEI	CGRYCG	2 cut(s)	213, 267
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	172, 351
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	3 cut(s)	223, 256, 369
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	3 cut(s)	167, 212, 227
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	117, 183, 246, 399, 417
BspANI	GGCC	3 cut(s)	167, 212, 227
BspCNI	CTCAG	5 cut(s)	39, 291, 324, 562, 597
BspFNI	CGCG	2 cut(s)	209, 428
BspLI	GGNNCC	2 cut(s)	176, 360
BspMAI	CTGCAG	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	178, 241, 407
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	3 cut(s)	222, 350, 351
BssMI	GATC	5 cut(s)	117, 183, 246, 399, 417
BssNI	GRCGYC	2 cut(s)	270, 501
Bst4CI	ACNGT	4 cut(s)	49, 124, 265, 367
BstACI	GRCGYC	2 cut(s)	270, 501
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	5 cut(s)	26, 299, 332, 570, 605
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	2 cut(s)	209, 428
BstH2I	RGCGCY	2 cut(s)	244, 317
BstHHI	GCGC	2 cut(s)	243, 316
BstKTI	GATC	5 cut(s)	120, 186, 249, 402, 420
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	5 cut(s)	117, 183, 246, 399, 417
BstMCI	CGRYCG	2 cut(s)	213, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 295
BstSCI	CCNGG	2 cut(s)	349, 350
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	2 cut(s)	209, 428
BstV1I	GCAGC	4 cut(s)	201, 294, 396, 575
BstV2I	GAAGAC	1 cut(s)	447
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	167, 212, 227
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	287
CaiI	CAGNNNCTG	1 cut(s)	244
CfoI	GCGC	2 cut(s)	243, 316
Cfr13I	GGNCC	1 cut(s)	358
Cfr9I	CCCGGG	1 cut(s)	350
CseI	GACGC	2 cut(s)	278, 434
Csp6I	GTAC	2 cut(s)	125, 131
CviQI	GTAC	2 cut(s)	125, 131
DdeI	CTNAG	5 cut(s)	26, 299, 332, 570, 605
DpnI	GATC	5 cut(s)	119, 185, 248, 401, 419
DpnII	GATC	5 cut(s)	117, 183, 246, 399, 417
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
EciI	GGCGGA	2 cut(s)	130, 524
EclXI	CGGCCG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	358
Eco52I	CGGCCG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	254
FaqI	GGGAC	1 cut(s)	500
FauI	CCCGC	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	9 cut(s)	19, 144, 147, 190, 210, 283, 410, 469, 589
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	9 cut(s)	19, 144, 147, 190, 210, 283, 410, 469, 589
GlaI	GCGC	2 cut(s)	242, 315
GluI	GCNGC	9 cut(s)	19, 144, 147, 190, 210, 283, 410, 469, 589
HaeII	RGCGCY	2 cut(s)	244, 317
HaeIII	GGCC	3 cut(s)	167, 212, 227
HapII	CCGG	2 cut(s)	172, 351
HgaI	GACGC	2 cut(s)	278, 434
HhaI	GCGC	2 cut(s)	243, 316
Hin1I	GRCGYC	2 cut(s)	270, 501
Hin6I	GCGC	2 cut(s)	241, 314
HinP1I	GCGC	2 cut(s)	241, 314
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	4 cut(s)	24, 112, 341, 607
HpaII	CCGG	2 cut(s)	172, 351
HphI	GGTGA	5 cut(s)	5, 43, 112, 400, 557
Hpy166II	GTNNAC	4 cut(s)	127, 268, 358, 424
Hpy188I	TCNGA	4 cut(s)	117, 223, 399, 606
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	4 cut(s)	127, 268, 358, 424
Hpy99I	CGWCG	5 cut(s)	233, 272, 399, 503, 506
HpyAV	CCTTC	2 cut(s)	375, 379
HpyCH4III	ACNGT	4 cut(s)	49, 124, 265, 367
HpyCH4IV	ACGT	3 cut(s)	129, 444, 501
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 295
HpyF3I	CTNAG	5 cut(s)	26, 299, 332, 570, 605
HpySE526I	ACGT	3 cut(s)	129, 444, 501
Hsp92I	GRCGYC	2 cut(s)	270, 501
HspAI	GCGC	2 cut(s)	241, 314
Kzo9I	GATC	5 cut(s)	117, 183, 246, 399, 417
LmnI	GCTCC	2 cut(s)	174, 279
Lsp1109I	GCAGC	4 cut(s)	201, 294, 396, 575
MaeII	ACGT	3 cut(s)	129, 444, 501
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	5 cut(s)	119, 185, 248, 401, 419
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	5 cut(s)	117, 183, 246, 399, 417
MboII	GAAGA	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	351
MlyI	GAGTC	3 cut(s)	18, 335, 616
MmeI	TCCRAC	2 cut(s)	274, 377
MspI	CCGG	2 cut(s)	172, 351
MspR9I	CCNGG	2 cut(s)	351, 352
MvnI	CGCG	2 cut(s)	209, 428
MwoI	GCNNNNNNNGC	2 cut(s)	27, 295
NciI	CCSGG	2 cut(s)	351, 352
NdeII	GATC	5 cut(s)	117, 183, 246, 399, 417
NlaIV	GGNNCC	2 cut(s)	176, 360
NmuCI	GTSAC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	9 cut(s)	20, 145, 148, 191, 211, 284, 411, 470, 590
PleI	GAGTC	3 cut(s)	18, 335, 615
PpsI	GAGTC	3 cut(s)	18, 335, 615
Ppu21I	YACGTR	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	176, 360
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	126, 132
RsaNI	GTAC	2 cut(s)	125, 131
SalI	GTCGAC	1 cut(s)	266
SatI	GCNGC	9 cut(s)	19, 144, 147, 190, 210, 283, 410, 469, 589
Sau3AI	GATC	5 cut(s)	117, 183, 246, 399, 417
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	3 cut(s)	18, 335, 616
ScrFI	CCNGG	2 cut(s)	351, 352
SduI	GDGCHC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	358
SmaI	CCCGGG	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	349, 350
TaaI	ACNGT	4 cut(s)	49, 124, 265, 367
TaiI	ACGT	3 cut(s)	132, 447, 504
TaqI	TCGA	1 cut(s)	267
TauI	GCSGC	5 cut(s)	21, 146, 149, 212, 471
TfiI	GAWTC	1 cut(s)	112
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	4 cut(s)	189, 282, 409, 588
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	17, 320, 335
TspMI	CCCGGG	1 cut(s)	350
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	358
XmaI	CCCGGG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	267
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.