Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Forward (+)

47455830 .. 47456966

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTTTGCGGCCTCTACAAGACAATCGCGGCTGTCCATTCCGAGGCCGACGAGTTCCAGCGCTTGATCCAACGGCAGGAGACGGTCGACGCCGTGAGGAGCAGGGTGCAGGAGAAGCTGAGGATGAATGAGGCGCTGATGAAGTTGCTACTGAGTTTGAACTCTGTGCCCGGGGTGGACCCCACGGTGAGGGAGGCAAGGAGGAAGGTGAGCCATCAGATCGTGGGGCTGCAGGAGATCGTTGACGCGATTGTTCAGGAAGACGTGGAGGGGTTCTGGGGTGGGTGCAGGGGCGGCTGGTGGCCTGGTGCTGTAGCGCGCGCTGCAATAAATACTTGCCGGTTCCAAAGCAAGAGAAGAACCAACAACAAGACTGCGGTAGAGCTGTGGCAATGTCTCCGAGGCCGGAGCTTGGTGATGGATGAGAGGAAAATGAAGGAAATTGAGAAGAAAACACAAAATGAAAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

157

Amino Acids

17.95

Weight (kDa)

9.54

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	9 - 83	1.7e-12	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	4 cut(s)	29, 248, 319, 321
AciI	CCGC	4 cut(s)	9, 29, 294, 377
AclWI	GGATC	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	90
AfeI	AGCGCT	1 cut(s)	62
AfiI	CCNNNNNNNGG	4 cut(s)	43, 76, 189, 412
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	118, 385, 411
AluI	AGCT	3 cut(s)	118, 385, 411
Alw26I	GTCTC	2 cut(s)	74, 401
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	62
AoxI	GGCC	4 cut(s)	10, 45, 302, 403
ApeKI	GCWGC	2 cut(s)	229, 323
AspLEI	GCGC	5 cut(s)	63, 136, 319, 321, 323
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	171, 172
AsuHPI	GGTGA	3 cut(s)	199, 220, 427
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	216, 310
BccI	CCATC	2 cut(s)	222, 412
BceAI	ACGGC	2 cut(s)	77, 89
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	2 cut(s)	171, 172
BcoDI	GTCTC	2 cut(s)	74, 401
BfmI	CTRYAG	2 cut(s)	230, 312
BfoI	RGCGCY	2 cut(s)	64, 137
BisI	GCNGC	5 cut(s)	10, 30, 230, 295, 324
BlsI	GCNGC	5 cut(s)	11, 31, 231, 296, 325
Bme1390I	CCNGG	3 cut(s)	171, 172, 306
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	180, 344
BmrFI	CCNGG	3 cut(s)	171, 172, 306
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	171, 172
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	5 cut(s)	42, 170, 171, 183, 400
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 76, 189, 412
Bse118I	RCCGGY	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	5 cut(s)	42, 170, 171, 183, 400
BseGI	GGATG	2 cut(s)	129, 427
BseLI	CCNNNNNNNGG	4 cut(s)	43, 76, 189, 412
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	110, 143
BsePI	GCGCGC	2 cut(s)	317, 319
BseRI	GAGGAG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	216, 310
BsgI	GTGCAG	2 cut(s)	128, 307
Bsh1236I	CGCG	4 cut(s)	29, 248, 319, 321
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	12, 47, 304, 405
BsiEI	CGRYCG	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	3 cut(s)	171, 340, 406
BslI	CCNNNNNNNGG	4 cut(s)	43, 76, 189, 412
BsmAI	GTCTC	2 cut(s)	74, 401
BsmBI	CGTCTC	1 cut(s)	74
BsnI	GGCC	4 cut(s)	12, 47, 304, 405
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	66, 219, 237
BspACI	CCGC	4 cut(s)	9, 29, 294, 377
BspANI	GGCC	4 cut(s)	12, 47, 304, 405
BspCNI	CTCAG	2 cut(s)	111, 144
BspFNI	CGCG	4 cut(s)	29, 248, 319, 321
BspLI	GGNNCC	2 cut(s)	180, 344
BspMAI	CTGCAG	1 cut(s)	234
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	5 cut(s)	42, 170, 171, 183, 400
BssHII	GCGCGC	2 cut(s)	317, 319
BssMI	GATC	3 cut(s)	66, 219, 237
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	85, 187
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	319, 321
BstDEI	CTNAG	2 cut(s)	119, 152
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	129, 427
BstFNI	CGCG	4 cut(s)	29, 248, 319, 321
BstH2I	RGCGCY	2 cut(s)	64, 137
BstHHI	GCGC	5 cut(s)	63, 136, 319, 321, 323
BstKTI	GATC	3 cut(s)	69, 222, 240
BstMAI	GTCTC	2 cut(s)	74, 401
BstMBI	GATC	3 cut(s)	66, 219, 237
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 294, 323
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	3 cut(s)	169, 170, 304
BstSFI	CTRYAG	2 cut(s)	230, 312
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	4 cut(s)	29, 248, 319, 321
BstV1I	GCAGC	2 cut(s)	216, 310
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	12, 47, 304, 405
BtgI	CCRYGG	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	129, 427
Cac8I	GCNNGC	2 cut(s)	319, 321
CfoI	GCGC	5 cut(s)	63, 136, 319, 321, 323
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	170
CseI	GACGC	2 cut(s)	98, 254
CviAII	CATG	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	119, 152
DpnI	GATC	3 cut(s)	68, 221, 239
DpnII	GATC	3 cut(s)	66, 219, 237
Eco47I	GGWCC	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	474
FaiI	YATR	1 cut(s)	472
FatI	CATG	1 cut(s)	470
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	10, 30, 230, 295, 324
FokI	GGATG	2 cut(s)	136, 434
Fsp4HI	GCNGC	5 cut(s)	10, 30, 230, 295, 324
GlaI	GCGC	5 cut(s)	62, 135, 318, 320, 322
GluI	GCNGC	5 cut(s)	10, 30, 230, 295, 324
HaeII	RGCGCY	2 cut(s)	64, 137
HaeIII	GGCC	4 cut(s)	12, 47, 304, 405
HapII	CCGG	3 cut(s)	171, 340, 406
HgaI	GACGC	2 cut(s)	98, 254
HhaI	GCGC	5 cut(s)	63, 136, 319, 321, 323
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	474
Hin6I	GCGC	5 cut(s)	61, 134, 317, 319, 321
HinP1I	GCGC	5 cut(s)	61, 134, 317, 319, 321
HincII	GTYRAC	2 cut(s)	88, 244
HindII	GTYRAC	2 cut(s)	88, 244
HpaII	CCGG	3 cut(s)	171, 340, 406
HphI	GGTGA	3 cut(s)	199, 220, 427
Hpy166II	GTNNAC	3 cut(s)	88, 178, 244
Hpy188I	TCNGA	3 cut(s)	43, 219, 401
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	3 cut(s)	88, 178, 244
Hpy99I	CGWCG	2 cut(s)	53, 92
HpyAV	CCTTC	2 cut(s)	199, 430
HpyCH4III	ACNGT	2 cut(s)	85, 187
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	109, 232, 288, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 294, 323
HpyF3I	CTNAG	2 cut(s)	119, 152
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	474
HspAI	GCGC	5 cut(s)	61, 134, 317, 319, 321
Kzo9I	GATC	3 cut(s)	66, 219, 237
LmnI	GCTCC	2 cut(s)	99, 408
Lsp1109I	GCAGC	2 cut(s)	216, 310
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	68, 221, 239
MboI	GATC	3 cut(s)	66, 219, 237
MboII	GAAGA	3 cut(s)	272, 369, 460
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	94
MspI	CCGG	3 cut(s)	171, 340, 406
MspR9I	CCNGG	3 cut(s)	171, 172, 306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	4 cut(s)	29, 248, 319, 321
MwoI	GCNNNNNNNGC	3 cut(s)	115, 294, 323
NciI	CCSGG	2 cut(s)	171, 172
NdeII	GATC	3 cut(s)	66, 219, 237
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	2 cut(s)	180, 344
PauI	GCGCGC	2 cut(s)	317, 319
PkrI	GCNGC	5 cut(s)	11, 31, 231, 296, 325
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	180, 344
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	234
PteI	GCGCGC	2 cut(s)	317, 319
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	5 cut(s)	10, 30, 230, 295, 324
Sau3AI	GATC	3 cut(s)	66, 219, 237
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	3 cut(s)	171, 172, 306
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	120, 210, 267, 387, 413
SfcI	CTRYAG	2 cut(s)	230, 312
SinI	GGWCC	1 cut(s)	178
SmaI	CCCGGG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	441
SsiI	CCGC	4 cut(s)	9, 29, 294, 377
StyD4I	CCNGG	3 cut(s)	169, 170, 304
TaaI	ACNGT	2 cut(s)	85, 187
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	441
TauI	GCSGC	3 cut(s)	12, 32, 297
TseI	GCWGC	2 cut(s)	229, 323
TspDTI	ATGAA	3 cut(s)	140, 155, 449
TspMI	CCCGGG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	178
XmaI	CCCGGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.