Rroxscaffold_5G00371310

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001749
Physical Location & Seq
Forward (+)
52912541 .. 52913404
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371310.1

Sequence Viewer

Length: 864 bp
ATGGAATCCCCATTCTTCGGTAATCCCTGGTACGACTACACTCCCCGCTCTCACTATCGTTCACCGAGCATGAGAGAAGTCCCAATCCAACGCCCAGATTACCCTCGCTATTATTCACTCAGAAACAGAGACGTCCCAGTCGAGCCCCAATCGGCCCGGGCCCCCAAGGTGGTCTCAATCCCGGTCCAACACGCCGGGTCGGAGCGTAGCCGGTCTGATCTACGCTCCGATGCGGCGCTGAAGATCCAGAAGGCCTTCAGAGGGTATTTGGTGAGGAAAAGCGTGAGCAAGATCGCCGGGATCAAACGCGAGGTGGATGAGATATCGAATCGAATCTCGAAGAAGGAAACGGAAGATTTGGTCAGAACCGACGCCAAGGAGCGGTTGAAGGTGGTCGAGACTCTGATGAGCTTGCTCCTGAAATTGGATTCCGTCAAGGGAGTCGACTCCGGGGTTAGGGATTTGAGGAGGGCGGTGATTAAGAAGGCGATTGCTCTGCAGGAGAAAGTGGAGGCCTCTGCAGCAAATCATCAAACACCTGGTGGGCATGAATCTGCTGAGCCTGAAACCAATCCCGGCTTGCAATCTTCGGAACAAAACGCCGAGACGGTTGTGAATCAGAGGGAATCATCTAGCGATTCAACGGAGAGCAAGAAGAAAGAGGAGCTAATAGAGAAGATGGTGGAGGAGAATGAGAGGATGGTGGGTCTGGTGACGGAGCTGGTTCACCGGAATGAAAAGCAAACCCGGCTGCTGGGGTCGCTGTCGCAGAGGGTGGAGCAGCTGGAGAGGGCTCTCATCAATCAGAGATTGAGGAGGAAGAAGAGGAGACATACTGTAGATTGCAGGGAAGGATTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG IQ

Protein Analysis

287

Amino Acids

32.87

Weight (kDa)

9.66

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAG PF02179 98 - 172 9e-11 BAG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AatII GACGTC 1 cut(s) 135
AccBSI CCGCTC 2 cut(s) 48, 382
AccI GTMKAC 1 cut(s) 444
AccII CGCG 1 cut(s) 309
AciI CCGC 4 cut(s) 46, 233, 382, 473
AclWI GGATC 2 cut(s) 238, 308
AcuI CTGAAG 2 cut(s) 241, 260
AcyI GRCGYC 2 cut(s) 132, 372
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 7 cut(s) 17, 169, 261, 381, 424, 456, 754
AgsI TTSAA 2 cut(s) 388, 642
AjnI CCWGG 2 cut(s) 26, 538
AluBI AGCT 4 cut(s) 411, 667, 721, 784
AluI AGCT 4 cut(s) 411, 667, 721, 784
Alw26I GTCTC 5 cut(s) 123, 178, 392, 599, 823
AlwI GGATC 2 cut(s) 238, 308
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 4 cut(s) 153, 159, 252, 513
ApaI GGGCCC 1 cut(s) 163
ApeKI GCWGC 3 cut(s) 521, 751, 781
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 154, 159, 160, 184
AsuC2I CCSGG 8 cut(s) 157, 158, 182, 196, 298, 451, 576, 748
AsuHPI GGTGA 5 cut(s) 54, 283, 487, 719, 724
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 163
BanII GRGCYC 3 cut(s) 147, 163, 796
BbvI GCAGC 3 cut(s) 533, 738, 793
BccI CCATC 2 cut(s) 673, 694
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 2 cut(s) 28, 540
BcnI CCSGG 8 cut(s) 157, 158, 182, 196, 298, 451, 576, 748
BcoDI GTCTC 5 cut(s) 123, 178, 392, 599, 823
BfaI CTAG 2 cut(s) 633, 862
BfmI CTRYAG 3 cut(s) 497, 519, 837
BfoI RGCGCY 1 cut(s) 239
BisI GCNGC 4 cut(s) 234, 522, 752, 782
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 4 cut(s) 235, 523, 753, 783
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 4 cut(s) 154, 159, 160, 184
BmiI GGNNCC 2 cut(s) 161, 162
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 806
Bpu1102I GCTNAGC 1 cut(s) 558
BpuMI CCSGG 8 cut(s) 157, 158, 182, 196, 298, 451, 576, 748
BsaHI GRCGYC 2 cut(s) 132, 372
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 5 cut(s) 26, 156, 165, 375, 450
BsaWI WCCGGW 1 cut(s) 729
Bsc4I CCNNNNNNNGG 7 cut(s) 17, 169, 261, 381, 424, 456, 754
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 2 cut(s) 28, 540
BseDI CCNNGG 5 cut(s) 26, 156, 165, 375, 450
BseGI GGATG 2 cut(s) 322, 705
BseLI CCNNNNNNNGG 7 cut(s) 17, 169, 261, 381, 424, 456, 754
BseMII CTCAG 2 cut(s) 133, 549
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 5 cut(s) 481, 677, 701, 829, 841
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 3 cut(s) 533, 738, 793
BseYI CCCAGC 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 4 cut(s) 155, 161, 254, 515
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 9 cut(s) 157, 182, 195, 211, 297, 450, 576, 730, 748
BslFI GGGAC 2 cut(s) 65, 119
BslI CCNNNNNNNGG 7 cut(s) 17, 169, 261, 381, 424, 456, 754
BsmAI GTCTC 5 cut(s) 123, 178, 392, 599, 823
BsmBI CGTCTC 2 cut(s) 123, 599
BsmFI GGGAC 2 cut(s) 65, 119
BsnI GGCC 4 cut(s) 155, 161, 254, 515
Bso31I GGTCTC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 156
Bsp120I GGGCCC 1 cut(s) 159
Bsp1286I GDGCHC 3 cut(s) 147, 163, 796
Bsp143I GATC 4 cut(s) 217, 243, 291, 300
Bsp1720I GCTNAGC 1 cut(s) 558
BspACI CCGC 4 cut(s) 46, 233, 382, 473
BspANI GGCC 4 cut(s) 155, 161, 254, 515
BspCNI CTCAG 2 cut(s) 132, 550
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 161, 162
BspMAI CTGCAG 2 cut(s) 501, 523
BspPI GGATC 2 cut(s) 238, 308
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 2 cut(s) 48, 382
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 5 cut(s) 26, 156, 165, 375, 450
BssMI GATC 4 cut(s) 217, 243, 291, 300
BssNI GRCGYC 2 cut(s) 132, 372
BssT1I CCWWGG 2 cut(s) 165, 375
Bst2UI CCWGG 2 cut(s) 28, 540
Bst4CI ACNGT 2 cut(s) 610, 838
Bst6I CTCTTC 1 cut(s) 818
BstACI GRCGYC 2 cut(s) 132, 372
BstC8I GCNNGC 2 cut(s) 413, 581
BstDEI CTNAG 2 cut(s) 119, 558
BstF5I GGATG 2 cut(s) 322, 705
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 4 cut(s) 220, 246, 294, 303
BstMAI GTCTC 5 cut(s) 123, 178, 392, 599, 823
BstMBI GATC 4 cut(s) 217, 243, 291, 300
BstMWI GCNNNNNNNGC 3 cut(s) 521, 748, 760
BstNI CCWGG 2 cut(s) 28, 540
BstSFI CTRYAG 3 cut(s) 497, 519, 837
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 533, 738, 793
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 4 cut(s) 155, 161, 254, 515
BtsCI GGATG 2 cut(s) 322, 705
Cac8I GCNNGC 2 cut(s) 413, 581
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 4 cut(s) 154, 159, 160, 184
Cfr9I CCCGGG 1 cut(s) 156
CseI GACGC 1 cut(s) 380
CsiI ACCWGGT 1 cut(s) 538
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 70, 548
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 119, 558
DpnI GATC 4 cut(s) 219, 245, 293, 302
DpnII GATC 4 cut(s) 217, 243, 291, 300
DraIII CACNNNGTG 1 cut(s) 542
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 818
EarI CTCTTC 1 cut(s) 818
Eco130I CCWWGG 2 cut(s) 165, 375
Eco147I AGGCCT 2 cut(s) 254, 515
Eco24I GRGCYC 3 cut(s) 147, 163, 796
Eco31I GGTCTC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 241, 260
Eco88I CYCGRG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 26, 538
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 2 cut(s) 165, 375
EcoT38I GRGCYC 3 cut(s) 147, 163, 796
ErhI CCWWGG 2 cut(s) 165, 375
Esp3I CGTCTC 2 cut(s) 123, 599
FaeI CATG 2 cut(s) 73, 551
FaiI YATR 3 cut(s) 71, 549, 834
FaqI GGGAC 2 cut(s) 65, 119
FatI CATG 2 cut(s) 69, 547
FauI CCCGC 1 cut(s) 53
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 4 cut(s) 234, 522, 752, 782
FokI GGATG 2 cut(s) 329, 712
FriOI GRGCYC 3 cut(s) 147, 163, 796
Fsp4HI GCNGC 4 cut(s) 234, 522, 752, 782
FspBI CTAG 2 cut(s) 633, 862
GlaI GCGC 1 cut(s) 237
GluI GCNGC 4 cut(s) 234, 522, 752, 782
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 1 cut(s) 806
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 4 cut(s) 155, 161, 254, 515
HapII CCGG 9 cut(s) 157, 182, 195, 211, 297, 450, 576, 730, 748
HgaI GACGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 2 cut(s) 132, 372
Hin1II CATG 2 cut(s) 73, 551
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HpaII CCGG 9 cut(s) 157, 182, 195, 211, 297, 450, 576, 730, 748
HphI GGTGA 5 cut(s) 54, 283, 487, 719, 724
Hpy166II GTNNAC 3 cut(s) 62, 445, 727
Hpy188III TCNNGA 4 cut(s) 247, 337, 397, 418
Hpy8I GTNNAC 3 cut(s) 62, 445, 727
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 6 cut(s) 244, 265, 337, 382, 478, 845
HpyCH4III ACNGT 2 cut(s) 610, 838
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 499, 521, 583, 846
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 748, 760
HpyF3I CTNAG 2 cut(s) 119, 558
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 2 cut(s) 132, 372
Hsp92II CATG 2 cut(s) 73, 551
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 4 cut(s) 217, 243, 291, 300
LmnI GCTCC 7 cut(s) 202, 230, 379, 420, 664, 718, 778
Lsp1109I GCAGC 3 cut(s) 533, 738, 793
LweI GCATC 1 cut(s) 220
MabI ACCWGGT 1 cut(s) 538
MaeI CTAG 2 cut(s) 633, 862
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 712
MalI GATC 4 cut(s) 219, 245, 293, 302
MbiI CCGCTC 2 cut(s) 48, 382
MboI GATC 4 cut(s) 217, 243, 291, 300
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 3 cut(s) 147, 163, 796
MluCI AATT 1 cut(s) 422
MlyI GAGTC 3 cut(s) 394, 440, 450
MmeI TCCRAC 3 cut(s) 112, 180, 211
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 9 cut(s) 157, 182, 195, 211, 297, 450, 576, 730, 748
MvaI CCWGG 2 cut(s) 28, 540
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 521, 748, 760
NciI CCSGG 8 cut(s) 157, 158, 182, 196, 298, 451, 576, 748
NdeII GATC 4 cut(s) 217, 243, 291, 300
NlaIII CATG 2 cut(s) 73, 551
NlaIV GGNNCC 2 cut(s) 161, 162
NmeAIII GCCGAG 1 cut(s) 628
NmuCI GTSAC 1 cut(s) 712
PceI AGGCCT 2 cut(s) 254, 515
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 9 cut(s) 5, 328, 333, 428, 551, 616, 626, 638, 855
PkrI GCNGC 4 cut(s) 235, 523, 753, 783
PleI GAGTC 3 cut(s) 394, 440, 449
PpsI GAGTC 3 cut(s) 394, 440, 449
Psp6I CCWGG 2 cut(s) 26, 538
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 2 cut(s) 26, 538
PspN4I GGNNCC 2 cut(s) 161, 162
PspOMI GGGCCC 1 cut(s) 159
PspPI GGNCC 4 cut(s) 154, 159, 160, 184
PstI CTGCAG 2 cut(s) 501, 523
PsuI RGATCY 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 732
SalI GTCGAC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 4 cut(s) 234, 522, 752, 782
Sau3AI GATC 4 cut(s) 217, 243, 291, 300
Sau96I GGNCC 4 cut(s) 154, 159, 160, 184
SchI GAGTC 3 cut(s) 394, 440, 450
SduI GDGCHC 3 cut(s) 147, 163, 796
SetI ASST 9 cut(s) 135, 171, 315, 393, 413, 541, 669, 723, 786
SexAI ACCWGGT 1 cut(s) 538
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 3 cut(s) 497, 519, 837
SinI GGWCC 1 cut(s) 184
SmaI CCCGGG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 732
SrfI GCCCGGGC 1 cut(s) 158
Sse9I AATT 1 cut(s) 422
SseBI AGGCCT 2 cut(s) 254, 515
SsiI CCGC 4 cut(s) 46, 233, 382, 473
SspMI CTAG 2 cut(s) 633, 862
StuI AGGCCT 2 cut(s) 254, 515
StyI CCWWGG 2 cut(s) 165, 375
TaaI ACNGT 2 cut(s) 610, 838
TaiI ACGT 1 cut(s) 135
TaqI TCGA 6 cut(s) 141, 326, 331, 338, 396, 444
TasI AATT 1 cut(s) 422
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 9 cut(s) 5, 328, 333, 428, 551, 616, 626, 638, 855
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 3 cut(s) 521, 751, 781
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 2 cut(s) 564, 750
TspGWI ACGGA 4 cut(s) 365, 421, 659, 731
TspMI CCCGGG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 184
XmaI CCCGGG 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 2 cut(s) 633, 862
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.