Rmu_sc0006801.1_g000006

BAG family molecular chaperone regulator 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006801.1
OG0001749
Physical Location & Seq
Forward (+)
35875 .. 36228
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006801.1_g000006.1.cds

Sequence Viewer

Length: 354 bp
atggtttgcggcctctacaagacaatcgcggcaatccattccgaggccgacgagttccagcgcctaatccaacggcaggagagggtcgacgccgtgaggagcagcatgcgggagaagctgaggatgaatgaggagctgatgaagttgctactgagtttggactctgtgcccggggtggaccccacggtgagggaggcaaggaggaaggtgagtcgtcagatcgtggggctgcaggagatcgttgactcgattgttcaggaagacgtggaggggttctgggttgggtgcgggggcgggtttgggagggactactggaacgacgtcgtggcgaagatggaggagggggtggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG IQ

Protein Analysis

117

Amino Acids

13.27

Weight (kDa)

5.06

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 29
AciI CCGC 5 cut(s) 9, 29, 109, 288, 294
AcyI GRCGYC 2 cut(s) 90, 321
AfiI CCNNNNNNNGG 3 cut(s) 43, 76, 189
AjiI CACGTC 1 cut(s) 265
AluBI AGCT 2 cut(s) 118, 136
AluI AGCT 2 cut(s) 118, 136
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 10, 45
ApeKI GCWGC 2 cut(s) 102, 229
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 2 cut(s) 171, 172
AsuHPI GGTGA 2 cut(s) 199, 220
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 114, 216
BccI CCATC 1 cut(s) 328
BceAI ACGGC 2 cut(s) 77, 89
BcnI CCSGG 2 cut(s) 171, 172
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 64
BisI GCNGC 4 cut(s) 10, 30, 103, 230
BlsI GCNGC 4 cut(s) 11, 31, 104, 231
Bme1390I CCNGG 2 cut(s) 171, 172
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 171, 172
BpiI GAAGAC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 171, 172
BsaHI GRCGYC 2 cut(s) 90, 321
BsaJI CCNNGG 4 cut(s) 42, 170, 171, 183
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 76, 189
Bse1I ACTGG 1 cut(s) 317
BseDI CCNNGG 4 cut(s) 42, 170, 171, 183
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 43, 76, 189
BseMII CTCAG 2 cut(s) 110, 143
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 3 cut(s) 112, 146, 353
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 2 cut(s) 114, 216
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 12, 47
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 43, 76, 189
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 2 cut(s) 12, 47
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 219, 237
BspACI CCGC 5 cut(s) 9, 29, 109, 288, 294
BspANI GGCC 2 cut(s) 12, 47
BspCNI CTCAG 2 cut(s) 111, 144
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 4 cut(s) 42, 170, 171, 183
BssMI GATC 2 cut(s) 219, 237
BssNI GRCGYC 2 cut(s) 90, 321
Bst4CI ACNGT 1 cut(s) 187
BstACI GRCGYC 2 cut(s) 90, 321
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 119, 152
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 222, 240
BstMBI GATC 2 cut(s) 219, 237
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 169, 170
BstSFI CTRYAG 1 cut(s) 230
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 114, 216
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 12, 47
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 178
Cfr9I CCCGGG 1 cut(s) 170
CseI GACGC 1 cut(s) 98
CviAII CATG 1 cut(s) 106
CviJI RGCY 5 cut(s) 12, 47, 118, 136, 229
CviKI_1 RGCY 5 cut(s) 12, 47, 118, 136, 229
DdeI CTNAG 2 cut(s) 119, 152
DpnI GATC 2 cut(s) 221, 239
DpnII GATC 2 cut(s) 219, 237
Eco47I GGWCC 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 170
FaeI CATG 1 cut(s) 109
FaiI YATR 1 cut(s) 107
FaqI GGGAC 1 cut(s) 320
FatI CATG 1 cut(s) 105
FauI CCCGC 3 cut(s) 102, 281, 287
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 4 cut(s) 10, 30, 103, 230
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 4 cut(s) 10, 30, 103, 230
GlaI GCGC 1 cut(s) 62
GluI GCNGC 4 cut(s) 10, 30, 103, 230
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 2 cut(s) 12, 47
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 2 cut(s) 90, 321
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 2 cut(s) 88, 244
HindII GTYRAC 2 cut(s) 88, 244
HinfI GANTC 3 cut(s) 161, 211, 245
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 199, 220
Hpy166II GTNNAC 3 cut(s) 88, 178, 244
Hpy188I TCNGA 2 cut(s) 43, 219
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 3 cut(s) 88, 178, 244
Hpy99I CGWCG 4 cut(s) 53, 92, 323, 326
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 264, 321
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 119, 152
HpySE526I ACGT 2 cut(s) 264, 321
Hsp92I GRCGYC 2 cut(s) 90, 321
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 219, 237
LmnI GCTCC 2 cut(s) 99, 133
LpnPI CCDG 7 cut(s) 62, 71, 184, 218, 242, 262, 298
Lsp1109I GCAGC 2 cut(s) 114, 216
MaeII ACGT 2 cut(s) 264, 321
MalI GATC 2 cut(s) 221, 239
MboI GATC 2 cut(s) 219, 237
MboII GAAGA 2 cut(s) 272, 343
MhlI GDGCHC 1 cut(s) 171
MlyI GAGTC 3 cut(s) 155, 220, 239
MmeI TCCRAC 1 cut(s) 94
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 171, 172
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 2 cut(s) 171, 172
NdeII GATC 2 cut(s) 219, 237
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 180
NspI RCATGY 1 cut(s) 109
PaeI GCATGC 1 cut(s) 109
PkrI GCNGC 4 cut(s) 11, 31, 104, 231
PleI GAGTC 3 cut(s) 155, 219, 239
PpsI GAGTC 3 cut(s) 155, 219, 239
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 234
SalI GTCGAC 1 cut(s) 86
SatI GCNGC 4 cut(s) 10, 30, 103, 230
Sau3AI GATC 2 cut(s) 219, 237
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 3 cut(s) 155, 220, 239
ScrFI CCNGG 2 cut(s) 171, 172
SduI GDGCHC 1 cut(s) 171
SetI ASST 5 cut(s) 120, 138, 210, 267, 324
SfcI CTRYAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 178
SmaI CCCGGG 1 cut(s) 172
SphI GCATGC 1 cut(s) 109
SsiI CCGC 5 cut(s) 9, 29, 109, 288, 294
StyD4I CCNGG 2 cut(s) 169, 170
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 2 cut(s) 267, 324
TaqI TCGA 2 cut(s) 87, 248
TauI GCSGC 2 cut(s) 12, 32
TseI GCWGC 2 cut(s) 102, 229
TspDTI ATGAA 2 cut(s) 140, 155
TspMI CCCGGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 109
XmaI CCCGGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 87
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.