Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005710.1

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Reverse (-)

18651 .. 19743

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005710.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggttttcggcctctacaagacaatcgcggccgtccattccgaggccgacgagttccagcgcctgatccaacggcaggagacggtcgacgtcgtgaggagcagcgtgcgggagaagctgaggatgaatgaggtgctgatgaagttgctactgagtttggactctgtgcccggggtggaccccacggagatcgttgacgcgattgttcaggaagacatggaggggttctgggttgggtgcgggggcgggtttgggagggactactggaacgacgtcgtggcgaagatggaggaggggcttaattgttattggggtagctggtggcctggtgctgtagtgcactgcaataagtacttgctggttccaaagcaagagaagaaccaacaacaagactgtggtagagctgtggcgatgtctccgaggccggagcttgggcgatggatgagaggaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

151

Amino Acids

17.21

Weight (kDa)

5.44

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	93, 276
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	29, 200
AciI	CCGC	4 cut(s)	29, 109, 240, 246
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	2 cut(s)	90, 273
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	43, 76, 431
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	4 cut(s)	118, 318, 404, 430
AluI	AGCT	4 cut(s)	118, 318, 404, 430
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	74, 420
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	61
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	5 cut(s)	10, 30, 45, 323, 422
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	171, 172
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	2 cut(s)	171, 342
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	280, 432
BceAI	ACGGC	2 cut(s)	17, 89
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	2 cut(s)	171, 172
BcoDI	GTCTC	2 cut(s)	74, 420
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	2 cut(s)	30, 103
BlsI	GCNGC	2 cut(s)	31, 104
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	3 cut(s)	171, 172, 327
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	180, 363
BmrFI	CCNGG	3 cut(s)	171, 172, 327
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	171, 172
BsaHI	GRCGYC	2 cut(s)	90, 273
BsaJI	CCNNGG	5 cut(s)	42, 170, 171, 183, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 76, 431
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	5 cut(s)	42, 170, 171, 183, 419
BseGI	GGATG	2 cut(s)	129, 447
BseLI	CCNNNNNNNGG	3 cut(s)	43, 76, 431
BseMII	CTCAG	2 cut(s)	110, 143
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	112, 305
BseSI	GKGCMC	2 cut(s)	171, 342
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	29, 200
Bsh1285I	CGRYCG	2 cut(s)	33, 87
BshFI	GGCC	5 cut(s)	12, 32, 47, 325, 424
BsiEI	CGRYCG	2 cut(s)	33, 87
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	171, 425
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	3 cut(s)	43, 76, 431
BsmAI	GTCTC	2 cut(s)	74, 420
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	5 cut(s)	12, 32, 47, 325, 424
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	171, 342
Bsp143I	GATC	2 cut(s)	66, 189
BspACI	CCGC	4 cut(s)	29, 109, 240, 246
BspANI	GGCC	5 cut(s)	12, 32, 47, 325, 424
BspCNI	CTCAG	2 cut(s)	111, 144
BspFNI	CGCG	2 cut(s)	29, 200
BspLI	GGNNCC	2 cut(s)	180, 363
BspPI	GGATC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	5 cut(s)	42, 170, 171, 183, 419
BssMI	GATC	2 cut(s)	66, 189
BssNI	GRCGYC	2 cut(s)	90, 273
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	85, 395
BstACI	GRCGYC	2 cut(s)	90, 273
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	119, 152
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	129, 447
BstFNI	CGCG	2 cut(s)	29, 200
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	69, 192
BstMAI	GTCTC	2 cut(s)	74, 420
BstMBI	GATC	2 cut(s)	66, 189
BstMCI	CGRYCG	2 cut(s)	33, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	3 cut(s)	169, 170, 325
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	2 cut(s)	171, 342
BstUI	CGCG	2 cut(s)	29, 200
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	219
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	5 cut(s)	12, 32, 47, 325, 424
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	2 cut(s)	425, 451
BtsCI	GGATG	2 cut(s)	129, 447
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	170
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	119, 152
DpnI	GATC	2 cut(s)	68, 191
DpnII	GATC	2 cut(s)	66, 189
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	178
Eco52I	CGGCCG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	220
FaiI	YATR	1 cut(s)	218
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	216
FauI	CCCGC	3 cut(s)	102, 233, 239
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	30, 103
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	30, 103
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	30, 103
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	5 cut(s)	12, 32, 47, 325, 424
HapII	CCGG	2 cut(s)	171, 425
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	2 cut(s)	90, 273
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	2 cut(s)	88, 196
HindII	GTYRAC	2 cut(s)	88, 196
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	171, 425
Hpy166II	GTNNAC	4 cut(s)	88, 178, 196, 340
Hpy188I	TCNGA	2 cut(s)	43, 420
Hpy188III	TCNNGA	2 cut(s)	94, 209
Hpy8I	GTNNAC	4 cut(s)	88, 178, 196, 340
Hpy99I	CGWCG	5 cut(s)	53, 92, 95, 275, 278
HpyCH4III	ACNGT	2 cut(s)	85, 395
HpyCH4IV	ACGT	2 cut(s)	90, 273
HpyCH4V	TGCA	2 cut(s)	340, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	119, 152
HpySE526I	ACGT	2 cut(s)	90, 273
Hsp92I	GRCGYC	2 cut(s)	90, 273
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	66, 189
LmnI	GCTCC	2 cut(s)	99, 427
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	2 cut(s)	90, 273
MalI	GATC	2 cut(s)	68, 191
MboI	GATC	2 cut(s)	66, 189
MboII	GAAGA	3 cut(s)	224, 295, 388
MhlI	GDGCHC	2 cut(s)	171, 342
MluCI	AATT	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	94
MseI	TTAA	1 cut(s)	300
MspI	CCGG	2 cut(s)	171, 425
MspR9I	CCNGG	3 cut(s)	171, 172, 327
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	2 cut(s)	29, 200
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	2 cut(s)	171, 172
NdeII	GATC	2 cut(s)	66, 189
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	180, 363
PkrI	GCNGC	2 cut(s)	31, 104
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	180, 363
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	30, 103
Sau3AI	GATC	2 cut(s)	66, 189
Sau96I	GGNCC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	3 cut(s)	171, 172, 327
SduI	GDGCHC	2 cut(s)	171, 342
SetI	ASST	7 cut(s)	93, 120, 135, 276, 320, 406, 432
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	178
SmaI	CCCGGG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	4 cut(s)	29, 109, 240, 246
StyD4I	CCNGG	3 cut(s)	169, 170, 325
TaaI	ACNGT	2 cut(s)	85, 395
TaiI	ACGT	2 cut(s)	93, 276
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	301
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	347
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	140, 155
TspGWI	ACGGA	1 cut(s)	200
TspMI	CCCGGG	1 cut(s)	170
TspRI	CASTG	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	178
XmaI	CCCGGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	87
ZraI	GACGTC	2 cut(s)	91, 274
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.