RchiOBHm_Chr5g0001561

BAG family molecular chaperone regulator 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001749
Physical Location & Seq
Reverse (-)
812685 .. 813668
984 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28298

Sequence Viewer

Length: 627 bp
ATGAAACCCTCTCACCGCCGCAGACTCAGCTTCTCCTCCACCGCCACCGTCACCGTCACCTACACTCTCCGCAATGACCAACCTGCCCCTCCCACCTCCACCCAGAACCCCACCCCGATTCCGATCACCGTACACGTACCGCAGTCCGCCGCCGCCGCCGTCAAAATCCAATCGGCCTACCGGAGCCACCTTATCCGCAGCCTCTACAAGACAATCGCGGCCGTCCATTCCGAGGCCGACGAGTTCCAGCGCCTGATCCAACGGCAGGAGACGGTCGACGCCGTGAGGAGCAGCGAGCGGGAGAAGCTGAGGATGAACGAGGCGCTGATGAAGTTGCTACTGAGATTGGACTCTGTGCCCGGGGTGGACCCCACAGTGAGGGAGGCGAGAAGGAAGGTGAGCCGTCGGATCGTGGGGCTGCAGGAGATCGTGGACGCGATTGTTCAGGAAGACGTGGAGGGGTTCTGGGGTGGGTGCGGCGGTGGGTTTGGGAGGGACTACTGGAACGACGTCGTGGCGGAGATGGAGGAGGGGGTGTGTAGGGAGAGAGGAGGTGAGGAAATGGAGAGGTTCTGTGCTGAGTATTTGGGGTTTCGCTGCTTACAGAGGTTTCTGAGTCAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG IQ

Protein Analysis

208

Amino Acids

23.51

Weight (kDa)

8.39

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAG PF02179 72 - 146 3.5e-15 BAG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 276
AccII CGCG 2 cut(s) 218, 437
AclWI GGATC 2 cut(s) 250, 416
AcoI YGGCCR 1 cut(s) 219
AcyI GRCGYC 2 cut(s) 279, 510
AfaI GTAC 2 cut(s) 132, 138
AfiI CCNNNNNNNGG 3 cut(s) 232, 265, 378
AflIII ACRYGT 1 cut(s) 133
AjiI CACGTC 1 cut(s) 454
AluBI AGCT 2 cut(s) 30, 307
AluI AGCT 2 cut(s) 30, 307
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 2 cut(s) 250, 416
AlwNI CAGNNNCTG 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 3 cut(s) 174, 219, 234
ApeKI GCWGC 4 cut(s) 198, 291, 418, 597
AspLEI GCGC 2 cut(s) 252, 325
AspS9I GGNCC 1 cut(s) 367
AsuC2I CCSGG 2 cut(s) 360, 361
AsuHPI GGTGA 6 cut(s) 5, 43, 49, 118, 409, 566
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 456
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 4 cut(s) 210, 303, 405, 584
BccI CCATC 1 cut(s) 517
BceAI ACGGC 6 cut(s) 143, 206, 266, 278, 387, 607
BcnI CCSGG 2 cut(s) 360, 361
BcoDI GTCTC 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 419
BfoI RGCGCY 2 cut(s) 253, 326
BfuAI ACCTGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 360, 361
Bme18I GGWCC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 2 cut(s) 185, 369
BmrFI CCNGG 2 cut(s) 360, 361
BpiI GAAGAC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 360, 361
BsaAI YACGTR 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 2 cut(s) 279, 510
BsaJI CCNNGG 3 cut(s) 231, 359, 360
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 265, 378
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 79
Bse8I GATNNNNATC 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 231, 359, 360
BseGI GGATG 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 3 cut(s) 232, 265, 378
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 5 cut(s) 40, 299, 332, 570, 605
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 4 cut(s) 25, 301, 542, 564
BseSI GKGCMC 1 cut(s) 360
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 4 cut(s) 210, 303, 405, 584
Bsh1236I CGCG 2 cut(s) 218, 437
Bsh1285I CGRYCG 2 cut(s) 222, 276
BshFI GGCC 3 cut(s) 176, 221, 236
BsiEI CGRYCG 2 cut(s) 222, 276
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 181, 360
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 3 cut(s) 232, 265, 378
BsmAI GTCTC 1 cut(s) 263
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 3 cut(s) 176, 221, 236
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 4 cut(s) 123, 255, 408, 426
BspANI GGCC 3 cut(s) 176, 221, 236
BspCNI CTCAG 5 cut(s) 39, 300, 333, 571, 606
BspFNI CGCG 2 cut(s) 218, 437
BspLI GGNNCC 2 cut(s) 185, 369
BspMAI CTGCAG 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 2 cut(s) 250, 416
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 79
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 3 cut(s) 231, 359, 360
BssMI GATC 4 cut(s) 123, 255, 408, 426
BssNI GRCGYC 2 cut(s) 279, 510
Bst4CI ACNGT 5 cut(s) 49, 55, 130, 274, 376
BstACI GRCGYC 2 cut(s) 279, 510
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 5 cut(s) 26, 308, 341, 579, 614
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 2 cut(s) 218, 437
BstH2I RGCGCY 2 cut(s) 253, 326
BstHHI GCGC 2 cut(s) 252, 325
BstKTI GATC 4 cut(s) 126, 258, 411, 429
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 4 cut(s) 123, 255, 408, 426
BstMCI CGRYCG 2 cut(s) 222, 276
BstMWI GCNNNNNNNGC 3 cut(s) 27, 155, 304
BstSCI CCNGG 2 cut(s) 358, 359
BstSFI CTRYAG 1 cut(s) 419
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 2 cut(s) 218, 437
BstV1I GCAGC 4 cut(s) 210, 303, 405, 584
BstV2I GAAGAC 1 cut(s) 456
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 176, 221, 236
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 296
CaiI CAGNNNCTG 1 cut(s) 253
CfoI GCGC 2 cut(s) 252, 325
Cfr13I GGNCC 1 cut(s) 367
Cfr9I CCCGGG 1 cut(s) 359
CseI GACGC 2 cut(s) 287, 443
Csp6I GTAC 2 cut(s) 131, 137
CviQI GTAC 2 cut(s) 131, 137
DdeI CTNAG 5 cut(s) 26, 308, 341, 579, 614
DpnI GATC 4 cut(s) 125, 257, 410, 428
DpnII GATC 4 cut(s) 123, 255, 408, 426
EaeI YGGCCR 1 cut(s) 219
EagI CGGCCG 1 cut(s) 219
EciI GGCGGA 2 cut(s) 136, 533
EclXI CGGCCG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 367
Eco52I CGGCCG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 263
FaqI GGGAC 1 cut(s) 509
FauI CCCGC 1 cut(s) 291
FblI GTMKAC 1 cut(s) 276
FokI GGATG 1 cut(s) 325
GlaI GCGC 2 cut(s) 251, 324
HaeII RGCGCY 2 cut(s) 253, 326
HaeIII GGCC 3 cut(s) 176, 221, 236
HapII CCGG 2 cut(s) 181, 360
HgaI GACGC 2 cut(s) 287, 443
HhaI GCGC 2 cut(s) 252, 325
Hin1I GRCGYC 2 cut(s) 279, 510
Hin6I GCGC 2 cut(s) 250, 323
HinP1I GCGC 2 cut(s) 250, 323
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 4 cut(s) 24, 118, 350, 616
HpaII CCGG 2 cut(s) 181, 360
HphI GGTGA 6 cut(s) 5, 43, 49, 118, 409, 566
Hpy166II GTNNAC 4 cut(s) 133, 277, 367, 433
Hpy188I TCNGA 4 cut(s) 123, 232, 408, 615
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 4 cut(s) 133, 277, 367, 433
Hpy99I CGWCG 5 cut(s) 242, 281, 408, 512, 515
HpyAV CCTTC 2 cut(s) 384, 388
HpyCH4III ACNGT 5 cut(s) 49, 55, 130, 274, 376
HpyCH4IV ACGT 3 cut(s) 135, 453, 510
HpyCH4V TGCA 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 155, 304
HpyF3I CTNAG 5 cut(s) 26, 308, 341, 579, 614
HpySE526I ACGT 3 cut(s) 135, 453, 510
Hsp92I GRCGYC 2 cut(s) 279, 510
HspAI GCGC 2 cut(s) 250, 323
Kzo9I GATC 4 cut(s) 123, 255, 408, 426
LmnI GCTCC 2 cut(s) 183, 288
Lsp1109I GCAGC 4 cut(s) 210, 303, 405, 584
MaeII ACGT 3 cut(s) 135, 453, 510
MaeIII GTNAC 2 cut(s) 49, 55
MalI GATC 4 cut(s) 125, 257, 410, 428
MbiI CCGCTC 1 cut(s) 298
MboI GATC 4 cut(s) 123, 255, 408, 426
MboII GAAGA 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 360
MlyI GAGTC 3 cut(s) 18, 344, 625
MmeI TCCRAC 2 cut(s) 283, 386
MspI CCGG 2 cut(s) 181, 360
MspR9I CCNGG 2 cut(s) 360, 361
MvnI CGCG 2 cut(s) 218, 437
MwoI GCNNNNNNNGC 3 cut(s) 27, 155, 304
NciI CCSGG 2 cut(s) 360, 361
NdeII GATC 4 cut(s) 123, 255, 408, 426
NlaIV GGNNCC 2 cut(s) 185, 369
NmuCI GTSAC 2 cut(s) 49, 55
PfeI GAWTC 1 cut(s) 118
PleI GAGTC 3 cut(s) 18, 344, 624
PpsI GAGTC 3 cut(s) 18, 344, 624
Ppu21I YACGTR 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 185, 369
PspPI GGNCC 1 cut(s) 367
PstI CTGCAG 1 cut(s) 423
PstNI CAGNNNCTG 1 cut(s) 253
RsaI GTAC 2 cut(s) 132, 138
RsaNI GTAC 2 cut(s) 131, 137
SalI GTCGAC 1 cut(s) 275
Sau3AI GATC 4 cut(s) 123, 255, 408, 426
Sau96I GGNCC 1 cut(s) 367
SchI GAGTC 3 cut(s) 18, 344, 625
ScrFI CCNGG 2 cut(s) 360, 361
SduI GDGCHC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 419
SinI GGWCC 1 cut(s) 367
SmaI CCCGGG 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 358, 359
TaaI ACNGT 5 cut(s) 49, 55, 130, 274, 376
TaiI ACGT 3 cut(s) 138, 456, 513
TaqI TCGA 1 cut(s) 276
TauI GCSGC 6 cut(s) 21, 152, 155, 158, 221, 480
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 2 cut(s) 49, 55
TseI GCWGC 4 cut(s) 198, 291, 418, 597
Tsp45I GTSAC 2 cut(s) 49, 55
TspDTI ATGAA 3 cut(s) 17, 329, 344
TspMI CCCGGG 1 cut(s) 359
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 367
XmaI CCCGGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 276
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.