Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Reverse (-)

17821947 .. 17822300

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23588

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTTTGCGGCCTCTACAAGACAATCGCGGCCGTCCATTCCGAGGCCGACGAGTTCCAGCGCCTGATCCAAAGGCAGGAGACGGTCGACGCTGTGAGGAGCAGCATGCAGGAGAAGCTGAGGATGAACGAGGCGGTGATGCAGTTGCTACTGAGTTTGGACTATGTGCCCAGGGTGGACCCCATGGTGAGGAAGGCAAGGAGGCAGGTGAGCCGTCTGATCGTGGGGCTGCAGGAGATCGTGGACGCGATTGTTCAGGAACACGTGGAGGGGTTCTGGAGTGGGTGCGGCGGTGGGTTTGGGAGGGACTACTGGAACGACGTCGTGGCGAAGATGGAGGAGGGGGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

5.37

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	9 - 83	2.7e-11	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
AatII	GACGTC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	29, 248
AciI	CCGC	5 cut(s)	9, 29, 134, 288, 291
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	30
AcvI	CACGTG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	43, 76, 189
AflIII	ACRYGT	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	61
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	3 cut(s)	10, 30, 45
ApeKI	GCWGC	2 cut(s)	102, 229
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	148, 199, 220
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	114, 216
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	2 cut(s)	17, 198
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	5 cut(s)	10, 30, 103, 230, 289
BlsI	GCNGC	5 cut(s)	11, 31, 104, 231, 290
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	4 cut(s)	42, 170, 171, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 76, 189
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	4 cut(s)	42, 170, 171, 183
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	43, 76, 189
BseMII	CTCAG	2 cut(s)	110, 143
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	112, 353
BseSI	GKGCMC	1 cut(s)	171
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	114, 216
Bsh1236I	CGCG	2 cut(s)	29, 248
Bsh1285I	CGRYCG	2 cut(s)	33, 87
BshFI	GGCC	3 cut(s)	12, 32, 47
BsiEI	CGRYCG	2 cut(s)	33, 87
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	43, 76, 189
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	12, 32, 47
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	66, 219, 237
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	5 cut(s)	9, 29, 134, 288, 291
BspANI	GGCC	3 cut(s)	12, 32, 47
BspCNI	CTCAG	2 cut(s)	111, 144
BspFNI	CGCG	2 cut(s)	29, 248
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	4 cut(s)	42, 170, 171, 183
BssMI	GATC	3 cut(s)	66, 219, 237
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	119, 152
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	29, 248
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	69, 222, 240
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	66, 219, 237
BstMCI	CGRYCG	2 cut(s)	33, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	2 cut(s)	29, 248
BstV1I	GCAGC	2 cut(s)	114, 216
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	12, 32, 47
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	2 cut(s)	98, 254
CviAII	CATG	2 cut(s)	106, 184
CviJI	RGCY	6 cut(s)	12, 32, 47, 118, 213, 229
CviKI_1	RGCY	6 cut(s)	12, 32, 47, 118, 213, 229
DdeI	CTNAG	2 cut(s)	119, 152
DpnI	GATC	3 cut(s)	68, 221, 239
DpnII	GATC	3 cut(s)	66, 219, 237
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	178
Eco52I	CGGCCG	1 cut(s)	30
Eco72I	CACGTG	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	2 cut(s)	109, 187
FaiI	YATR	3 cut(s)	107, 165, 185
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	105, 183
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	10, 30, 103, 230, 289
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	5 cut(s)	10, 30, 103, 230, 289
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	10, 30, 103, 230, 289
GsuI	CTGGAG	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	3 cut(s)	12, 32, 47
HgaI	GACGC	2 cut(s)	98, 254
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	109, 187
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HphI	GGTGA	3 cut(s)	148, 199, 220
Hpy166II	GTNNAC	3 cut(s)	88, 178, 244
Hpy188I	TCNGA	2 cut(s)	43, 219
Hpy188III	TCNNGA	2 cut(s)	257, 277
Hpy8I	GTNNAC	3 cut(s)	88, 178, 244
Hpy99I	CGWCG	4 cut(s)	53, 92, 323, 326
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	264, 321
HpyCH4V	TGCA	3 cut(s)	109, 142, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	119, 152
HpySE526I	ACGT	2 cut(s)	264, 321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	109, 187
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	66, 219, 237
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	114, 216
LweI	GCATC	1 cut(s)	129
MaeII	ACGT	2 cut(s)	264, 321
MalI	GATC	3 cut(s)	68, 221, 239
MboI	GATC	3 cut(s)	66, 219, 237
MboII	GAAGA	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	2 cut(s)	29, 248
MwoI	GCNNNNNNNGC	1 cut(s)	115
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	66, 219, 237
NlaIII	CATG	2 cut(s)	109, 187
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	196
PasI	CCCWGGG	1 cut(s)	171
PkrI	GCNGC	5 cut(s)	11, 31, 104, 231, 290
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	170
PspCI	CACGTG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	5 cut(s)	10, 30, 103, 230, 289
Sau3AI	GATC	3 cut(s)	66, 219, 237
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	4 cut(s)	120, 210, 267, 324
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	178
SphI	GCATGC	1 cut(s)	109
SsiI	CCGC	5 cut(s)	9, 29, 134, 288, 291
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	267, 324
TaqI	TCGA	1 cut(s)	87
TauI	GCSGC	3 cut(s)	12, 32, 291
TseI	GCWGC	2 cut(s)	102, 229
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	178
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.