Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Forward (+)

28810705 .. 28811343

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATGAAACCCTCTCGCAGCCGCAGACTCAGCTTCTCCTCCTCCGCCTCCACCACCGTCACCTACACCCTCCACGATGACCAACCTGCCCCTCCCGCCACCACCGAAATTCCCATCCAGACCTCGGACACCCCAATTCCCATTACCTTTCACTTACCGCAATCCACCGCAGCCATCAAAATTCAATCGGCCTACCGGGCCCACCTCATCCGCACCCACTTCAAAACAATCGCAGCCGTCCACTCCGAGGCCAACCAGTACCAGCGCCGGATCCAACGGCAGGAAACTGTCGACGCCATCAGGACAAGCGAGCGCGAGAAGCTGAGGATGAACGAGTCCCTGATGCGGCTGCTGCTGAAGCTGGACTCGGTGCCCGGCGTGGACCCCGCGGTGAGGGAAGCGAGGAGAAAGGTGAGCCGTCGGATCGTGGGGCTGCAGGAGATCGTGGACGCGATCGTATCGGAAGACGTGGATGGCTTCTGGGGTGGCAGAGACGGCGGATTTGGGAGGAACTGGGACGACATCCTTGCGGAGATGGAGGAGGAGGTGTGCAGGGATAGAGGAGGGGAGGAGATGGAGAGGTTTTGCGCTCAGTATCTGGGGTTTCGGTGCTTGCAGCGATTTTTGCAGGAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

213

Amino Acids

24.2

Weight (kDa)

6.98

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	77 - 151	7.2e-15	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	3 cut(s)	315, 389, 452
AclWI	GGATC	3 cut(s)	265, 278, 431
AcsI	RAATTY	2 cut(s)	108, 180
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	5 cut(s)	124, 247, 280, 345, 393
AgsI	TTSAA	2 cut(s)	185, 223
AjiI	CACGTC	1 cut(s)	469
AluBI	AGCT	3 cut(s)	33, 322, 361
AluI	AGCT	3 cut(s)	33, 322, 361
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	3 cut(s)	265, 278, 431
AlwNI	CAGNNNCTG	1 cut(s)	598
AoxI	GGCC	3 cut(s)	189, 198, 249
ApaI	GGGCCC	1 cut(s)	202
ApeKI	GCWGC	7 cut(s)	18, 170, 233, 349, 352, 433, 616
ApoI	RAATTY	2 cut(s)	108, 180
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspLEI	GCGC	3 cut(s)	267, 315, 590
AspS9I	GGNCC	3 cut(s)	198, 199, 382
AsuC2I	CCSGG	2 cut(s)	197, 375
AsuHPI	GGTGA	3 cut(s)	52, 403, 424
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	2 cut(s)	202, 375
BamHI	GGATCC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	7 cut(s)	30, 182, 245, 336, 339, 420, 628
BccI	CCATC	6 cut(s)	122, 182, 305, 467, 529, 568
BceAI	ACGGC	5 cut(s)	221, 293, 402, 511, 619
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BcnI	CCSGG	2 cut(s)	197, 375
BcoDI	GTCTC	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	94
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	9 cut(s)	19, 22, 171, 234, 347, 350, 353, 434, 617
BlsI	GCNGC	9 cut(s)	20, 23, 172, 235, 348, 351, 354, 435, 618
Bme1390I	CCNGG	2 cut(s)	197, 375
Bme18I	GGWCC	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	198, 199, 382
BmiI	GGNNCC	5 cut(s)	200, 272, 372, 384, 633
BmrFI	CCNGG	2 cut(s)	197, 375
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	323
BpuMI	CCSGG	2 cut(s)	197, 375
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	123, 246, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 247, 280, 345, 393
Bse1I	ACTGG	2 cut(s)	256, 518
BseDI	CCNNGG	3 cut(s)	123, 246, 387
BseGI	GGATG	5 cut(s)	114, 207, 333, 478, 522
BseLI	CCNNNNNNNGG	5 cut(s)	124, 247, 280, 345, 393
BseMII	CTCAG	3 cut(s)	43, 314, 605
BseNI	ACTGG	2 cut(s)	256, 518
BseRI	GAGGAG	7 cut(s)	28, 31, 418, 554, 557, 576, 584
BseSI	GKGCMC	2 cut(s)	202, 375
BseXI	GCAGC	7 cut(s)	30, 182, 245, 336, 339, 420, 628
BsgI	GTGCAG	1 cut(s)	571
Bsh1236I	CGCG	3 cut(s)	315, 389, 452
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	191, 200, 251
BshNI	GGYRCC	1 cut(s)	370
BsiEI	CGRYCG	1 cut(s)	456
BsiSI	CCGG	3 cut(s)	196, 268, 375
BslFI	GGGAC	2 cut(s)	322, 530
BslI	CCNNNNNNNGG	5 cut(s)	124, 247, 280, 345, 393
BsmAI	GTCTC	1 cut(s)	486
BsmBI	CGTCTC	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	322, 530
BsnI	GGCC	3 cut(s)	191, 200, 251
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	202, 375
Bsp143I	GATC	4 cut(s)	270, 423, 441, 453
BspANI	GGCC	3 cut(s)	191, 200, 251
BspCNI	CTCAG	3 cut(s)	42, 315, 604
BspFNI	CGCG	3 cut(s)	315, 389, 452
BspLI	GGNNCC	5 cut(s)	200, 272, 372, 384, 633
BspMAI	CTGCAG	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	3 cut(s)	265, 278, 431
BspT107I	GGYRCC	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	256, 518
BssECI	CCNNGG	3 cut(s)	123, 246, 387
BssMI	GATC	4 cut(s)	270, 423, 441, 453
BssNI	GRCGYC	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	58, 289
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	311, 614
BstDEI	CTNAG	3 cut(s)	29, 323, 591
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	5 cut(s)	114, 207, 333, 478, 522
BstFNI	CGCG	3 cut(s)	315, 389, 452
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	3 cut(s)	267, 315, 590
BstKTI	GATC	4 cut(s)	273, 426, 444, 456
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	4 cut(s)	270, 423, 441, 453
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 95, 197, 319, 352, 358, 495, 625
BstSCI	CCNGG	2 cut(s)	195, 373
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	2 cut(s)	202, 375
BstUI	CGCG	3 cut(s)	315, 389, 452
BstV1I	GCAGC	7 cut(s)	30, 182, 245, 336, 339, 420, 628
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	191, 200, 251
BtgI	CCRYGG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	5 cut(s)	114, 207, 333, 478, 522
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	311, 614
CaiI	CAGNNNCTG	1 cut(s)	598
CfoI	GCGC	3 cut(s)	267, 315, 590
Cfr13I	GGNCC	3 cut(s)	198, 199, 382
Cfr42I	CCGCGG	1 cut(s)	390
CseI	GACGC	2 cut(s)	302, 458
Csp6I	GTAC	1 cut(s)	259
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	3 cut(s)	29, 323, 591
DpnI	GATC	4 cut(s)	272, 425, 443, 455
DpnII	GATC	4 cut(s)	270, 423, 441, 453
EciI	GGCGGA	2 cut(s)	34, 513
Eco24I	GRGCYC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	486
FaqI	GGGAC	2 cut(s)	322, 530
FauI	CCCGC	2 cut(s)	103, 394
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	9 cut(s)	19, 22, 171, 234, 347, 350, 353, 434, 617
FokI	GGATG	5 cut(s)	101, 194, 340, 485, 509
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	9 cut(s)	19, 22, 171, 234, 347, 350, 353, 434, 617
GlaI	GCGC	3 cut(s)	266, 314, 589
GluI	GCNGC	9 cut(s)	19, 22, 171, 234, 347, 350, 353, 434, 617
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	3 cut(s)	191, 200, 251
HapII	CCGG	3 cut(s)	196, 268, 375
HgaI	GACGC	2 cut(s)	302, 458
HhaI	GCGC	3 cut(s)	267, 315, 590
Hin1I	GRCGYC	1 cut(s)	294
Hin6I	GCGC	3 cut(s)	265, 313, 588
HinP1I	GCGC	3 cut(s)	265, 313, 588
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	27, 335, 365
HpaII	CCGG	3 cut(s)	196, 268, 375
HphI	GGTGA	3 cut(s)	52, 403, 424
Hpy166II	GTNNAC	4 cut(s)	241, 292, 382, 448
Hpy188I	TCNGA	4 cut(s)	127, 247, 423, 463
Hpy188III	TCNNGA	2 cut(s)	118, 301
Hpy8I	GTNNAC	4 cut(s)	241, 292, 382, 448
Hpy99I	CGWCG	2 cut(s)	296, 423
HpyCH4III	ACNGT	2 cut(s)	58, 289
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	4 cut(s)	436, 552, 616, 628
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 95, 197, 319, 352, 358, 495, 625
HpyF3I	CTNAG	3 cut(s)	29, 323, 591
HpySE526I	ACGT	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	294
HspAI	GCGC	3 cut(s)	265, 313, 588
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	270, 423, 441, 453
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	7 cut(s)	30, 182, 245, 336, 339, 420, 628
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	4 cut(s)	272, 425, 443, 455
MboI	GATC	4 cut(s)	270, 423, 441, 453
MboII	GAAGA	1 cut(s)	476
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	202, 375
MluCI	AATT	3 cut(s)	108, 135, 180
MlyI	GAGTC	3 cut(s)	21, 344, 359
MmeI	TCCRAC	2 cut(s)	298, 401
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	3 cut(s)	196, 268, 375
MspR9I	CCNGG	2 cut(s)	197, 375
MvnI	CGCG	3 cut(s)	315, 389, 452
MwoI	GCNNNNNNNGC	8 cut(s)	30, 95, 197, 319, 352, 358, 495, 625
NciI	CCSGG	2 cut(s)	197, 375
NdeII	GATC	4 cut(s)	270, 423, 441, 453
NlaIV	GGNNCC	5 cut(s)	200, 272, 372, 384, 633
NmuCI	GTSAC	1 cut(s)	58
PkrI	GCNGC	9 cut(s)	20, 23, 172, 235, 348, 351, 354, 435, 618
Ple19I	CGATCG	1 cut(s)	456
PleI	GAGTC	3 cut(s)	21, 343, 359
PpsI	GAGTC	3 cut(s)	21, 343, 359
PspN4I	GGNNCC	5 cut(s)	200, 272, 372, 384, 633
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	3 cut(s)	198, 199, 382
PstI	CTGCAG	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	456
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacII	CCGCGG	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	290
SatI	GCNGC	9 cut(s)	19, 22, 171, 234, 347, 350, 353, 434, 617
Sau3AI	GATC	4 cut(s)	270, 423, 441, 453
Sau96I	GGNCC	3 cut(s)	198, 199, 382
SchI	GAGTC	3 cut(s)	21, 344, 359
ScrFI	CCNGG	2 cut(s)	197, 375
SduI	GDGCHC	2 cut(s)	202, 375
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	434
SfiI	GGCCNNNNNGGCC	1 cut(s)	197
Sfr303I	CCGCGG	1 cut(s)	390
SgrBI	CCGCGG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	382
Sse9I	AATT	3 cut(s)	108, 135, 180
StyD4I	CCNGG	2 cut(s)	195, 373
TaaI	ACNGT	2 cut(s)	58, 289
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	1 cut(s)	291
TasI	AATT	3 cut(s)	108, 135, 180
TauI	GCSGC	2 cut(s)	24, 349
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	7 cut(s)	18, 170, 233, 349, 352, 433, 616
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	20, 344
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	108, 180
XmiI	GTMKAC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.