Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Forward (+)

4342209 .. 4344875

Gene Structure 2667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTGGGCATTGCTCATTTGGGTTTCTTTGCTTCTCATAAGTATCACACATTGGGTTTATAGTTGGAGAAATCCTAAATGCAGAGGGAAACTTCCACCTGGTTCCATGGGTTTCCCTTTACTCGGCGAGAGTATCCAATTCTTCAAGCCAAACAAAACTTCAGACATCCCTCCTTTTATCAAAGAGAGAGTTAAGAAGTATGGCCCAATTTTCAAGACCAATCTGGTGGGGAGACCAGTTATTGTATCAACAGATGCTGATTTGAGTTATTTTGTGTTTAACCAAGAGGGACGTTGTTTCCAGAGTTGGTATCCAGACACTTTTACACACATCTTTGGGAAGAAGAATGTGGGTTCATTACATGGTTTCATGTACAAGTACCTTAAAAACATGGTTTTGACTCTCTTTGGCCATGATGGTCTCAAGAAGATGCTTCCTCAAGTAGAAATGACTGCCAATAAGAGGTTGGAGCTTTGGTCAAATCAAGATTCAGTAGAACTCAAAGATGCAACCGCAAGCATGATATTTGATCTCACCGCGAAGAAGTTGATCAGCCATGATCCAGACAAGTCATCAGAGAATCTAAGGGCAAACTTTGTTGCTTTCATACAGGGATTGATCTCTTTCCCTTTTGATATCCCAGGCACAGCTTATCACAAATGTCTACAGGGTAGGGCAAAGGCAATGAAAATGTTGAGGAATATGCTTCAAGAGAGGCGTGAGAACCCTCGGAAGAATCCAAGTGATTTCTTTGATTATGTTATTGAAGAGATTCAGAAAGAAGGGACAATTCTGACAGAAGAGATTGCACTGGATTTGATGTTTGTCTTGCTATTTGCCAGCTTTGAAACAACTTCTTTGGCTCTAACTTTAGCTATCAAGTTTCTCTCAGATGACCCTGAAGTCCTAAAGCGTTTAACGGAAGAACATGAGACAATTCTGAGAAACCGGGAAGATGCAGACTCTGGACTTACATGGGAAGAATACAAGTCAATGACTTACACATTTCAGTTCATAAACGAAACCGCGAGACTAGCAAATATAGTTCCTGCAATCTTCAGAAAGGCGTTGAGAGATATAAAATTCAAAGATTATACGATTCCAGCCGGCTGGGCGGTGATGGTCTGTCCACCAGCTGTACATTTGAATCCCGAAATGTATAAAGATCCTTTAGTCTTTAATCCATCAAGATGGGAGGGATCAAAAGTTACAAACGCATCAAAGCACTTCATGGCGTTTGGTGGAGGTATGAGGTTCTGCGTTGGAACCGACTTCACAAAATTGCAGATGGCTGCGTTTCTTCACAGCTTGGTAACAAAATACAGGTGGGAGGAGATAAAAGGAGGGAATATAACTCGAACGCCTGGATTACAGTTTCCAAATGGTTACCATGTCAAACTCCATAAGAAGAGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

472

Amino Acids

54.35

Weight (kDa)

9.24

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 458	3.4e-63	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	902
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	2 cut(s)	539, 1028
AciI	CCGC	4 cut(s)	513, 537, 1026, 1115
AclWI	GGATC	3 cut(s)	554, 1160, 1207
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	1082
AcuI	CTGAAG	3 cut(s)	144, 921, 1042
AfaI	GTAC	3 cut(s)	374, 380, 1140
AfiI	CCNNNNNNNGG	2 cut(s)	122, 462
AgsI	TTSAA	7 cut(s)	145, 214, 710, 767, 848, 1087, 1147
AjnI	CCWGG	3 cut(s)	97, 640, 1363
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	6 cut(s)	472, 650, 843, 875, 1136, 1308
AluI	AGCT	6 cut(s)	472, 650, 843, 875, 1136, 1308
Alw26I	GTCTC	5 cut(s)	226, 425, 926, 1024, 1407
AlwI	GGATC	3 cut(s)	554, 1160, 1207
AlwNI	CAGNNNCTG	2 cut(s)	257, 965
AoxI	GGCC	2 cut(s)	202, 409
ApeKI	GCWGC	1 cut(s)	1292
ApoI	RAATTY	1 cut(s)	1082
Asp700I	GAANNNNTTC	1 cut(s)	771
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	2 cut(s)	526, 1129
BalI	TGGCCA	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	1279
BccI	CCATC	5 cut(s)	410, 1114, 1185, 1192, 1282
BciT130I	CCWGG	3 cut(s)	99, 642, 1365
BciVI	GTATCC	2 cut(s)	143, 321
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	5 cut(s)	226, 425, 926, 1024, 1407
BfaI	CTAG	2 cut(s)	1034, 1417
BfmI	CTRYAG	1 cut(s)	665
BfuI	GTATCC	2 cut(s)	143, 321
BglI	GCCNNNNNGGC	1 cut(s)	1112
BisI	GCNGC	1 cut(s)	1293
BlsI	GCNGC	1 cut(s)	1294
Bme1390I	CCNGG	4 cut(s)	99, 642, 950, 1365
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	103, 1267
BmrFI	CCNGG	4 cut(s)	99, 642, 950, 1365
BmsI	GCATC	5 cut(s)	244, 420, 496, 946, 1226
BpuEI	CTTGAG	2 cut(s)	407, 423
BpuMI	CCSGG	1 cut(s)	950
BsaI	GGTCTC	2 cut(s)	226, 425
BsaJI	CCNNGG	3 cut(s)	105, 640, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 462
Bse118I	RCCGGY	1 cut(s)	1106
Bse1I	ACTGG	2 cut(s)	236, 816
Bse3DI	GCAATG	2 cut(s)	8, 690
BseBI	CCWGG	3 cut(s)	99, 642, 1365
BseDI	CCNNGG	3 cut(s)	105, 640, 728
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	122, 462
BseMI	GCAATG	2 cut(s)	8, 690
BseMII	CTCAG	2 cut(s)	903, 932
BseNI	ACTGG	2 cut(s)	236, 816
BseRI	GAGGAG	1 cut(s)	1346
BseXI	GCAGC	1 cut(s)	1279
BseYI	CCCAGC	1 cut(s)	1110
Bsh1236I	CGCG	2 cut(s)	539, 1028
BshFI	GGCC	2 cut(s)	204, 411
BsiSI	CCGG	2 cut(s)	949, 1107
BslFI	GGGAC	2 cut(s)	303, 799
BslI	CCNNNNNNNGG	2 cut(s)	122, 462
BsmAI	GTCTC	5 cut(s)	226, 425, 926, 1024, 1407
BsmFI	GGGAC	2 cut(s)	303, 799
BsnI	GGCC	2 cut(s)	204, 411
Bso31I	GGTCTC	2 cut(s)	226, 425
Bsp1407I	TGTACA	2 cut(s)	372, 1138
Bsp143I	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	4 cut(s)	513, 537, 1026, 1115
BspANI	GGCC	2 cut(s)	204, 411
BspCNI	CTCAG	2 cut(s)	902, 933
BspFNI	CGCG	2 cut(s)	539, 1028
BspLI	GGNNCC	2 cut(s)	103, 1267
BspPI	GGATC	3 cut(s)	554, 1160, 1207
BspTNI	GGTCTC	2 cut(s)	226, 425
BsrDI	GCAATG	2 cut(s)	8, 690
BsrFI	RCCGGY	1 cut(s)	1106
BsrGI	TGTACA	2 cut(s)	372, 1138
BsrI	ACTGG	2 cut(s)	236, 816
BssAI	RCCGGY	1 cut(s)	1106
BssECI	CCNNGG	3 cut(s)	105, 640, 728
BssMI	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	3 cut(s)	99, 642, 1365
Bst4CI	ACNGT	1 cut(s)	1374
Bst6I	CTCTTC	3 cut(s)	762, 795, 1403
BstAUI	TGTACA	2 cut(s)	372, 1138
BstC8I	GCNNGC	3 cut(s)	517, 841, 1108
BstDEI	CTNAG	3 cut(s)	584, 889, 941
BstDSI	CCRYGG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	1385
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	2 cut(s)	539, 1028
BstKTI	GATC	6 cut(s)	532, 552, 562, 621, 1168, 1202
BstMAI	GTCTC	5 cut(s)	226, 425, 926, 1024, 1407
BstMBI	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
BstMWI	GCNNNNNNNGC	2 cut(s)	1034, 1112
BstNI	CCWGG	3 cut(s)	99, 642, 1365
BstPI	GGTNACC	1 cut(s)	1385
BstSCI	CCNGG	4 cut(s)	97, 640, 948, 1363
BstSFI	CTRYAG	1 cut(s)	665
BstUI	CGCG	2 cut(s)	539, 1028
BstV1I	GCAGC	1 cut(s)	1279
BstX2I	RGATCY	1 cut(s)	1165
BstXI	CCANNNNNNTGG	3 cut(s)	226, 1110, 1191
BstYI	RGATCY	1 cut(s)	1165
BsuI	GTATCC	2 cut(s)	143, 321
BsuRI	GGCC	2 cut(s)	204, 411
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	809
Cac8I	GCNNGC	3 cut(s)	517, 841, 1108
CaiI	CAGNNNCTG	2 cut(s)	257, 965
Cfr10I	RCCGGY	1 cut(s)	1106
Cfr13I	GGNCC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	373, 379, 1139
CviQI	GTAC	3 cut(s)	373, 379, 1139
DdeI	CTNAG	3 cut(s)	584, 889, 941
DpnI	GATC	6 cut(s)	531, 551, 561, 620, 1167, 1201
DpnII	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
DrdI	GACNNNNNNGTC	1 cut(s)	902
DseDI	GACNNNNNNGTC	1 cut(s)	902
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	3 cut(s)	762, 795, 1403
EarI	CTCTTC	3 cut(s)	762, 795, 1403
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	226, 425
Eco32I	GATATC	1 cut(s)	637
Eco57I	CTGAAG	3 cut(s)	144, 921, 1042
Eco91I	GGTNACC	1 cut(s)	1385
EcoO65I	GGTNACC	1 cut(s)	1385
EcoRII	CCWGG	3 cut(s)	97, 640, 1363
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaqI	GGGAC	2 cut(s)	303, 799
FbaI	TGATCA	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	1 cut(s)	1293
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	1293
FspBI	CTAG	2 cut(s)	1034, 1417
GluI	GCNGC	1 cut(s)	1293
GsaI	CCCAGC	1 cut(s)	1114
HaeIII	GGCC	2 cut(s)	204, 411
HapII	CCGG	2 cut(s)	949, 1107
HinfI	GANTC	8 cut(s)	400, 488, 580, 736, 772, 962, 1099, 1147
HpaII	CCGG	2 cut(s)	949, 1107
HphI	GGTGA	2 cut(s)	526, 1129
Hpy166II	GTNNAC	2 cut(s)	665, 1130
Hpy188I	TCNGA	8 cut(s)	163, 577, 732, 777, 795, 892, 942, 1061
Hpy8I	GTNNAC	2 cut(s)	665, 1130
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	1 cut(s)	1374
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	6 cut(s)	81, 509, 809, 959, 1052, 1285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1034, 1112
HpyF3I	CTNAG	3 cut(s)	584, 889, 941
HpySE526I	ACGT	1 cut(s)	292
KroI	GCCGGC	1 cut(s)	1106
KroNI	GCCGGC	1 cut(s)	1108
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	1279
LweI	GCATC	5 cut(s)	244, 420, 496, 946, 1226
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	2 cut(s)	1034, 1417
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	3 cut(s)	1207, 1312, 1385
MalI	GATC	6 cut(s)	531, 551, 561, 620, 1167, 1201
MboI	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
MflI	RGATCY	1 cut(s)	1165
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	6 cut(s)	137, 207, 789, 936, 1082, 1280
MluNI	TGGCCA	1 cut(s)	411
MlyI	GAGTC	2 cut(s)	394, 956
MmeI	TCCRAC	3 cut(s)	44, 447, 1243
Mox20I	TGGCCA	1 cut(s)	411
MroNI	GCCGGC	1 cut(s)	1106
MroXI	GAANNNNTTC	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	5 cut(s)	192, 279, 384, 917, 1179
MslI	CAYNNNNRTG	1 cut(s)	1189
Msp20I	TGGCCA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	1136
MspI	CCGG	2 cut(s)	949, 1107
MspR9I	CCNGG	4 cut(s)	99, 642, 950, 1365
MvaI	CCWGG	3 cut(s)	99, 642, 1365
MvnI	CGCG	2 cut(s)	539, 1028
MwoI	GCNNNNNNNGC	2 cut(s)	1034, 1112
NaeI	GCCGGC	1 cut(s)	1108
NciI	CCSGG	1 cut(s)	950
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
NgoMIV	GCCGGC	1 cut(s)	1106
NlaIV	GGNNCC	2 cut(s)	103, 1267
NmeAIII	GCCGAG	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	1108
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	6 cut(s)	488, 580, 736, 772, 1099, 1147
PkrI	GCNGC	1 cut(s)	1294
PleI	GAGTC	2 cut(s)	394, 956
PpsI	GAGTC	2 cut(s)	394, 956
Psp6I	CCWGG	3 cut(s)	97, 640, 1363
PspEI	GGTNACC	1 cut(s)	1385
PspFI	CCCAGC	1 cut(s)	1110
PspGI	CCWGG	3 cut(s)	97, 640, 1363
PspN4I	GGNNCC	2 cut(s)	103, 1267
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	2 cut(s)	257, 965
PsuI	RGATCY	1 cut(s)	1165
PvuII	CAGCTG	1 cut(s)	1136
RsaI	GTAC	3 cut(s)	374, 380, 1140
RsaNI	GTAC	3 cut(s)	373, 379, 1139
RseI	CAYNNNNRTG	1 cut(s)	1189
SaqAI	TTAA	5 cut(s)	192, 279, 384, 917, 1179
SatI	GCNGC	1 cut(s)	1293
Sau3AI	GATC	6 cut(s)	529, 549, 559, 618, 1165, 1199
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	394, 956
ScrFI	CCNGG	4 cut(s)	99, 642, 950, 1365
SexAI	ACCWGGT	1 cut(s)	97
SfaNI	GCATC	5 cut(s)	244, 420, 496, 946, 1226
SfcI	CTRYAG	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	1189
SmlI	CTYRAG	2 cut(s)	422, 438
SmoI	CTYRAG	2 cut(s)	422, 438
Sse9I	AATT	6 cut(s)	137, 207, 789, 936, 1082, 1280
SsiI	CCGC	4 cut(s)	513, 537, 1026, 1115
SspMI	CTAG	2 cut(s)	1034, 1417
StyD4I	CCNGG	4 cut(s)	97, 640, 948, 1363
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	1374
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	1357
TasI	AATT	6 cut(s)	137, 207, 789, 936, 1082, 1280
TatI	WGTACW	2 cut(s)	372, 1138
TfiI	GAWTC	6 cut(s)	488, 580, 736, 772, 1099, 1147
Tru1I	TTAA	5 cut(s)	192, 279, 384, 917, 1179
Tru9I	TTAA	5 cut(s)	192, 279, 384, 917, 1179
TscAI	CASTG	1 cut(s)	816
TseI	GCWGC	1 cut(s)	1292
TspDTI	ATGAA	6 cut(s)	345, 358, 595, 701, 1003, 1219
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	1 cut(s)	816
XapI	RAATTY	1 cut(s)	1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	2 cut(s)	1034, 1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.