Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Forward (+)

51538555 .. 51539642

Gene Structure 1088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATTGTAAAGCAAAGGGAGAATGCTAATTCAGGGCTTACATGGGAAGAATACAAGTCCATGACATTCACATTGCAGGTCATCAATGAAACGGTTAGACTGACAAATCATGTTCCAGGAATGTTTCGCAAGGCAATAAAAGAAGTACAATTCAAAGTGAGTGCAGGATATACAATTCCAGAAGGCTGGTCAGTTATGGTTTGTCCCCAAGTCCAACACTTGAACCCAGAAAAATATGAAGATCCTATGGCCTTCAATCCATGGAGATGGGAGGGAAAGGAGAGTGGTGCATCGAAAGATTTCATGGCTTTTGGTGGTGGCTTGAGATCCTGCGTAGGAGCAGCGTTTGGCAAGGTGCAGATGGCTGTATTTCTTCATTGCTTCGTTACAAAGTACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

133

Amino Acids

15.16

Weight (kDa)

9.05

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	8 - 133	2e-30	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AclWI	GGATC	2 cut(s)	236, 321
AfaI	GTAC	2 cut(s)	147, 395
AgsI	TTSAA	3 cut(s)	154, 223, 256
AjnI	CCWGG	1 cut(s)	115
AlwI	GGATC	2 cut(s)	236, 321
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	2 cut(s)	261, 355
BciT130I	CCWGG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	260
Bse3DI	GCAATG	2 cut(s)	71, 376
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	260
BseMI	GCAATG	2 cut(s)	71, 376
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	2 cut(s)	183, 377
BshFI	GGCC	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	241, 326
Bsp19I	CCATGG	1 cut(s)	260
BspANI	GGCC	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	236, 321
BsrDI	GCAATG	2 cut(s)	71, 376
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	241, 326
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	260
BstKTI	GATC	2 cut(s)	244, 329
BstMBI	GATC	2 cut(s)	241, 326
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	241, 326
BstXI	CCANNNNNNTGG	2 cut(s)	186, 267
BstYI	RGATCY	2 cut(s)	241, 326
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	146, 394
CviAII	CATG	5 cut(s)	42, 61, 110, 261, 304
CviJI	RGCY	6 cut(s)	37, 186, 251, 308, 321, 365
CviKI_1	RGCY	6 cut(s)	37, 186, 251, 308, 321, 365
CviQI	GTAC	2 cut(s)	146, 394
DpnI	GATC	2 cut(s)	243, 328
DpnII	GATC	2 cut(s)	241, 326
Eco130I	CCWWGG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	5 cut(s)	45, 64, 113, 264, 307
FaiI	YATR	9 cut(s)	43, 62, 111, 171, 197, 237, 248, 262, 305
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	5 cut(s)	41, 60, 109, 260, 303
Fnu4HI	GCNGC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	251
Hin1II	CATG	5 cut(s)	45, 64, 113, 264, 307
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	176, 262
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	4 cut(s)	76, 164, 290, 358
Hsp92II	CATG	5 cut(s)	45, 64, 113, 264, 307
Kzo9I	GATC	2 cut(s)	241, 326
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	243, 328
MboI	GATC	2 cut(s)	241, 326
MboII	GAAGA	3 cut(s)	59, 251, 365
MflI	RGATCY	2 cut(s)	241, 326
MluCI	AATT	3 cut(s)	28, 149, 174
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	241, 326
NlaIII	CATG	5 cut(s)	45, 64, 113, 264, 307
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	241, 326
RsaI	GTAC	2 cut(s)	147, 395
RsaNI	GTAC	2 cut(s)	146, 394
RseI	CAYNNNNRTG	1 cut(s)	265
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	241, 326
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	3 cut(s)	81, 357, 401
SfaNI	GCATC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	3 cut(s)	28, 149, 174
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	28, 149, 174
TatI	WGTACW	2 cut(s)	145, 393
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	102, 252, 292, 365
XmnI	GAANNNNTTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.