Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

156158 .. 157511

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgtttttgttactctttgcgagctttgatacaacttccacagctatgactctactcctcaagtttgtttcagaccatcctctggtgctaaagcaattgctgcaagaacatgagatgattgtaaagcaaagggagaatgctaattcagggcttacatgggaagaatacaagtccatgacattcacattgcaggtcatcaatgaaacggttagactgacaaatcatgttccaggaatgtttcgcaaggcaataaaagaagtacaattcaaaggatatacaattccagaaggctggtcagttatgctttgtccccaagtccaacacttgaacccagaaaaatatgaagatcctatggccttcaatccatggagatgggagggaaaggagagtggtgcatcgaaagatttcatggcttttggtggtggcttgagatcctgcgtaggagcagcgtttggcaaggtgcagatggctgtatttcttcattgcttcgttacaaagtacaggtgggaggtaatcaaaggaggaaatatattccgaaatccttggatacaatttccagggggttttcacattcgggtactggagaaagacacaagtaacagtagacagcatataagtccagatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

209

Amino Acids

24.04

Weight (kDa)

8.75

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	604
AclWI	GGATC	2 cut(s)	341, 426
AfaI	GTAC	3 cut(s)	261, 500, 579
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	268, 328, 361
AjnI	CCWGG	2 cut(s)	229, 556
AluBI	AGCT	2 cut(s)	24, 44
AluI	AGCT	2 cut(s)	24, 44
AlwI	GGATC	2 cut(s)	341, 426
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	100, 446
Asp700I	GAANNNNTTC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	87, 458
BccI	CCATC	3 cut(s)	84, 366, 460
BciT130I	CCWGG	2 cut(s)	231, 558
BciVI	GTATCC	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	181
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	2 cut(s)	101, 447
BlsI	GCNGC	2 cut(s)	102, 448
Bme1390I	CCNGG	2 cut(s)	231, 558
BmrFI	CCNGG	2 cut(s)	231, 558
BmsI	GCATC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	44, 448
BsaJI	CCNNGG	3 cut(s)	365, 542, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	2 cut(s)	185, 481
BseBI	CCWGG	2 cut(s)	231, 558
BseDI	CCNNGG	3 cut(s)	365, 542, 557
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	2 cut(s)	185, 481
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	87, 458
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	346, 431
Bsp19I	CCATGG	1 cut(s)	365
BspANI	GGCC	1 cut(s)	356
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	2 cut(s)	341, 426
BsrDI	GCAATG	2 cut(s)	185, 481
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	365, 542, 557
BssMI	GATC	2 cut(s)	346, 431
BssT1I	CCWWGG	2 cut(s)	365, 542
Bst2UI	CCWGG	2 cut(s)	231, 558
Bst4CI	ACNGT	2 cut(s)	208, 602
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	2 cut(s)	349, 434
BstMBI	GATC	2 cut(s)	346, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	231, 558
BstSCI	CCNGG	2 cut(s)	229, 556
BstV1I	GCAGC	2 cut(s)	87, 458
BstX2I	RGATCY	2 cut(s)	346, 431
BstXI	CCANNNNNNTGG	2 cut(s)	291, 372
BstYI	RGATCY	2 cut(s)	346, 431
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	260, 499, 578
CviAII	CATG	6 cut(s)	110, 156, 175, 224, 366, 409
CviJI	RGCY	8 cut(s)	24, 44, 151, 291, 356, 413, 426, 470
CviKI_1	RGCY	8 cut(s)	24, 44, 151, 291, 356, 413, 426, 470
CviQI	GTAC	3 cut(s)	260, 499, 578
DpnI	GATC	2 cut(s)	348, 433
DpnII	GATC	2 cut(s)	346, 431
Eco130I	CCWWGG	2 cut(s)	365, 542
EcoRII	CCWGG	2 cut(s)	229, 556
EcoT14I	CCWWGG	2 cut(s)	365, 542
ErhI	CCWWGG	2 cut(s)	365, 542
FaeI	CATG	6 cut(s)	113, 159, 178, 227, 369, 412
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	6 cut(s)	109, 155, 174, 223, 365, 408
FblI	GTMKAC	1 cut(s)	604
Fnu4HI	GCNGC	2 cut(s)	101, 447
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	101, 447
GluI	GCNGC	2 cut(s)	101, 447
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	6 cut(s)	113, 159, 178, 227, 369, 412
HinfI	GANTC	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	2 cut(s)	73, 536
Hpy188III	TCNNGA	2 cut(s)	284, 620
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	281, 367
HpyCH4III	ACNGT	2 cut(s)	208, 602
HpyCH4V	TGCA	4 cut(s)	103, 190, 395, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
Hsp92II	CATG	6 cut(s)	113, 159, 178, 227, 369, 412
Kzo9I	GATC	2 cut(s)	346, 431
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	2 cut(s)	87, 458
LweI	GCATC	1 cut(s)	404
MaeIII	GTNAC	3 cut(s)	9, 490, 596
MalI	GATC	2 cut(s)	348, 433
MboI	GATC	2 cut(s)	346, 431
MboII	GAAGA	3 cut(s)	173, 356, 470
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	2 cut(s)	346, 431
MluCI	AATT	5 cut(s)	95, 142, 263, 279, 551
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	5 cut(s)	68, 90, 370, 502, 515
MroXI	GAANNNNTTC	1 cut(s)	404
MslI	CAYNNNNRTG	2 cut(s)	44, 370
MspR9I	CCNGG	2 cut(s)	231, 558
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	2 cut(s)	231, 558
MwoI	GCNNNNNNNGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	2 cut(s)	346, 431
NlaIII	CATG	6 cut(s)	113, 159, 178, 227, 369, 412
PctI	GAATGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	102, 448
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	229, 556
PspGI	CCWGG	2 cut(s)	229, 556
PsuI	RGATCY	2 cut(s)	346, 431
RsaI	GTAC	3 cut(s)	261, 500, 579
RsaNI	GTAC	3 cut(s)	260, 499, 578
RseI	CAYNNNNRTG	2 cut(s)	44, 370
SatI	GCNGC	2 cut(s)	101, 447
Sau3AI	GATC	2 cut(s)	346, 431
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	231, 558
SetI	ASST	6 cut(s)	26, 46, 195, 462, 506, 513
SfaNI	GCATC	1 cut(s)	404
SmiMI	CAYNNNNRTG	2 cut(s)	44, 370
SmlI	CTYRAG	2 cut(s)	59, 427
SmoI	CTYRAG	2 cut(s)	59, 427
Sse9I	AATT	5 cut(s)	95, 142, 263, 279, 551
StyD4I	CCNGG	2 cut(s)	229, 556
StyI	CCWWGG	2 cut(s)	365, 542
TaaI	ACNGT	2 cut(s)	208, 602
TaqI	TCGA	1 cut(s)	398
TasI	AATT	5 cut(s)	95, 142, 263, 279, 551
TatI	WGTACW	2 cut(s)	259, 498
TseI	GCWGC	2 cut(s)	100, 446
TspDTI	ATGAA	4 cut(s)	216, 357, 397, 470
Van91I	CCANNNNNTGG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.