Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

8931656 .. 8934297

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1066400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGTGGGCTTTGTGCATTACAGCATTGGTTGTTATAAGCATTACACATTGGGTTTATAGGTGGAGAAATCCCAAATGCAATGGCAAACTTCCACCAGGCTCAATGGGATTGCCACTACTTGGGGAAACTTTACAATTCTTCACTCCCAACACCTCTTCTGATATTCCTCCCTTCATCAAGGAAAGAATGGAAAGATATGGACCAATTTTCAGGAGTAATTTGGTGGGAAGGCCAATTATCGTATCAACTGACCCGGATCTCAATTACTTTGTGTTCCAACAAGAGGGAAATTTGTTCCAAAGTTGGTATCCAGATACATTCACAGAGATTTTTGGCAGACAAAATGTTGGCTCCTTGCATGGGGTCATGTACAAATACCTCAAGAACATGGTCCTGCATCTCTTTGGCCCTGAAAGCCTTAAGAAAATGATCCCGGAAATTGAACAGGCAGCACTTAGCAGGTTACAACAATGGTCATCTCAGGACAGTACAGAATTAAAAGACTCAATTGCAAGCATGATATTTGATCTCACTGCAAAGAAACTTATTAGTTATGAGTCAAATAAGTCCTCGGAGAACTTACGGGAAAACTTCGTTGCGTTCATACAAGGATTGATCTCCTTTCCTATGGACATCCCTGGAACATCTTATCACAAGTGTTTAGTGGGTAGGAAAAGTGCAATGAGAATGCTTAAGAACATGCTGCAGGAAAGACGAGCAGAGTCCCGGAAGCAGCCAATTGATTTTTTCGATTACGTGCTTGAAGAACTTAAGAAAGAGGGAACAATACTTACAGAGGGAATTGCTTTGGACTTAATGTTTGTGCTGCTTTTCGCGAGCTTCGAAACAACTTCCCTGGCTATAACATTAGCCATGAAGTTTCTTACAGACCATCCTCTTGTGCTAAAGCAATTGACGGAAGAGCACGAGATGATTTTAAAGCAAAGGGAAAATTCCGATTCTGGACTCACATGGAAAGAGTACAAATCAATGAAATTTACGTTTCAGGTCATCAGCGAAACAGTTAGGCTGGCGAATATAGTTCCAGGCATCTTTCGAAAAGCAGTGAGAGAAATAAAATTTAAGGGATATACAATTCCAGCAGGTTGGGCAGTTATGGTTTGTCCACCAGCCGTACACTTAAACCCAGCCAAATACGAAAACCCAGTAGCCTTCAATCCATGCAGATGGGAGGGCGTAGAAGTGTGCAATGCATCCAAACATTTCATGGCTTTTGGTGGTGGCATGAGATTTTGTGTTGGAACAGAATTTACTAAAGTGCAGATGGCTGTATTTCTACACTGCTTAGTTACCAAGTGCAGGTGGGAACCAATCAAAGGAGGAGATATAGTCCGAACGCCGGGTTTACAATTTCCAAATGGTTTTCATGCGAAGATAATGGAGAAAGAAAAACAAGCAACAGAAAAAAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

479

Amino Acids

54.66

Weight (kDa)

8.94

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 453	6.3e-63	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
AarI	CACCTGC	1 cut(s)	1311
Acc36I	ACCTGC	3 cut(s)	450, 1094, 1311
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccII	CGCG	1 cut(s)	836
AclWI	GGATC	2 cut(s)	264, 424
AcsI	RAATTY	5 cut(s)	289, 952, 995, 1079, 1268
AfaI	GTAC	4 cut(s)	371, 490, 983, 1137
AfiI	CCNNNNNNNGG	6 cut(s)	119, 283, 360, 1320, 1337, 1360
AflII	CTTAAG	3 cut(s)	419, 692, 770
AgsI	TTSAA	3 cut(s)	443, 764, 1177
AjnI	CCWGG	4 cut(s)	94, 637, 855, 1045
AluBI	AGCT	1 cut(s)	840
AluI	AGCT	1 cut(s)	840
Alw21I	GWGCWC	1 cut(s)	927
AlwI	GGATC	2 cut(s)	264, 424
AoxI	GGCC	2 cut(s)	230, 406
ApeKI	GCWGC	4 cut(s)	449, 703, 733, 826
ApoI	RAATTY	5 cut(s)	289, 952, 995, 1079, 1268
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AspS9I	GGNCC	3 cut(s)	200, 391, 407
AsuC2I	CCSGG	4 cut(s)	254, 434, 727, 1362
AsuII	TTCGAA	2 cut(s)	843, 1057
AvaII	GGWCC	2 cut(s)	200, 391
BauI	CACGAG	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	4 cut(s)	461, 690, 745, 813
BccI	CCATC	3 cut(s)	900, 1182, 1279
BceAI	ACGGC	1 cut(s)	1118
BciT130I	CCWGG	4 cut(s)	96, 639, 857, 1047
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	4 cut(s)	254, 434, 727, 1362
BfmI	CTRYAG	1 cut(s)	704
BfrI	CTTAAG	3 cut(s)	419, 692, 770
BfuAI	ACCTGC	3 cut(s)	450, 1094, 1311
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	4 cut(s)	450, 704, 734, 827
BlsI	GCNGC	4 cut(s)	451, 705, 735, 828
Bme1390I	CCNGG	8 cut(s)	96, 254, 434, 639, 727, 857, 1047, 1362
Bme18I	GGWCC	2 cut(s)	200, 391
BmgT120I	GGNCC	3 cut(s)	200, 391, 407
BmiI	GGNNCC	2 cut(s)	352, 1329
BmrFI	CCNGG	8 cut(s)	96, 254, 434, 639, 727, 857, 1047, 1362
BmrI	ACTGGG	1 cut(s)	1160
BmsI	GCATC	3 cut(s)	406, 1059, 1223
BmuI	ACTGGG	1 cut(s)	1160
Bpu14I	TTCGAA	2 cut(s)	843, 1057
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	4 cut(s)	254, 434, 727, 1362
BsaAI	YACGTR	1 cut(s)	757
BsaJI	CCNNGG	3 cut(s)	570, 637, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	1335, 1365
Bsc4I	CCNNNNNNNGG	6 cut(s)	119, 283, 360, 1320, 1337, 1360
Bse1I	ACTGG	1 cut(s)	1166
Bse3DI	GCAATG	3 cut(s)	85, 687, 1216
BseBI	CCWGG	4 cut(s)	96, 639, 857, 1047
BseDI	CCNNGG	3 cut(s)	570, 637, 855
BseGI	GGATG	3 cut(s)	633, 892, 1214
BseLI	CCNNNNNNNGG	6 cut(s)	119, 283, 360, 1320, 1337, 1360
BseMI	GCAATG	3 cut(s)	85, 687, 1216
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	1166
BseRI	GAGGAG	1 cut(s)	1356
BseXI	GCAGC	4 cut(s)	461, 690, 745, 813
BseYI	CCCAGC	1 cut(s)	1147
BsgI	GTGCAG	2 cut(s)	1301, 1339
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	2 cut(s)	232, 408
BsiHKAI	GWGCWC	1 cut(s)	927
BsiSI	CCGG	4 cut(s)	254, 434, 727, 1361
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	6 cut(s)	119, 283, 360, 1320, 1337, 1360
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	232, 408
Bsp119I	TTCGAA	2 cut(s)	843, 1057
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	256, 429, 526, 615
Bsp68I	TCGCGA	1 cut(s)	836
BspANI	GGCC	2 cut(s)	232, 408
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	2 cut(s)	352, 1329
BspMAI	CTGCAG	1 cut(s)	708
BspMI	ACCTGC	3 cut(s)	450, 1094, 1311
BspPI	GGATC	2 cut(s)	264, 424
BspQI	GCTCTTC	1 cut(s)	915
BspT104I	TTCGAA	2 cut(s)	843, 1057
BspTI	CTTAAG	3 cut(s)	419, 692, 770
BsrDI	GCAATG	3 cut(s)	85, 687, 1216
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	1166
BssECI	CCNNGG	3 cut(s)	570, 637, 855
BssMI	GATC	4 cut(s)	256, 429, 526, 615
BssSI	CACGAG	1 cut(s)	926
Bst2BI	CACGAG	1 cut(s)	926
Bst2UI	CCWGG	4 cut(s)	96, 639, 857, 1047
Bst4CI	ACNGT	2 cut(s)	488, 1024
Bst6I	CTCTTC	2 cut(s)	160, 915
BstAFI	CTTAAG	3 cut(s)	419, 692, 770
BstAUI	TGTACA	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	757
BstBI	TTCGAA	2 cut(s)	843, 1057
BstC8I	GCNNGC	3 cut(s)	514, 838, 1032
BstDEI	CTNAG	3 cut(s)	455, 480, 1306
BstF5I	GGATG	3 cut(s)	633, 892, 1214
BstFNI	CGCG	1 cut(s)	836
BstKTI	GATC	4 cut(s)	259, 432, 529, 618
BstMBI	GATC	4 cut(s)	256, 429, 526, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 1109
BstNI	CCWGG	4 cut(s)	96, 639, 857, 1047
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	8 cut(s)	94, 252, 432, 637, 725, 855, 1045, 1360
BstSFI	CTRYAG	1 cut(s)	704
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	4 cut(s)	461, 690, 745, 813
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	2 cut(s)	1107, 1188
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	232, 408
BtsCI	GGATG	3 cut(s)	633, 892, 1214
BtsI	GCAGTG	3 cut(s)	531, 1071, 1300
BtsIMutI	CAGTG	3 cut(s)	531, 1071, 1300
BtuMI	TCGCGA	1 cut(s)	836
BveI	ACCTGC	3 cut(s)	450, 1094, 1311
Cac8I	GCNNGC	3 cut(s)	514, 838, 1032
Cfr13I	GGNCC	3 cut(s)	200, 391, 407
Csp6I	GTAC	4 cut(s)	370, 489, 982, 1136
CviQI	GTAC	4 cut(s)	370, 489, 982, 1136
DdeI	CTNAG	3 cut(s)	455, 480, 1306
DpnI	GATC	4 cut(s)	258, 431, 528, 617
DpnII	GATC	4 cut(s)	256, 429, 526, 615
DraI	TTTAAA	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	160, 915
EarI	CTCTTC	2 cut(s)	160, 915
Eco47I	GGWCC	2 cut(s)	200, 391
EcoRII	CCWGG	4 cut(s)	94, 637, 855, 1045
EcoT22I	ATGCAT	1 cut(s)	1216
FaqI	GGGAC	1 cut(s)	709
Fnu4HI	GCNGC	4 cut(s)	450, 704, 734, 827
FokI	GGATG	3 cut(s)	620, 879, 1201
Fsp4HI	GCNGC	4 cut(s)	450, 704, 734, 827
GluI	GCNGC	4 cut(s)	450, 704, 734, 827
GsaI	CCCAGC	1 cut(s)	1151
HaeIII	GGCC	2 cut(s)	232, 408
HapII	CCGG	4 cut(s)	254, 434, 727, 1361
HinfI	GANTC	5 cut(s)	503, 557, 722, 959, 966
HpaII	CCGG	4 cut(s)	254, 434, 727, 1361
Hpy166II	GTNNAC	3 cut(s)	1127, 1138, 1367
Hpy188I	TCNGA	4 cut(s)	160, 574, 958, 1355
Hpy188III	TCNNGA	6 cut(s)	211, 311, 382, 482, 835, 963
Hpy8I	GTNNAC	3 cut(s)	1127, 1138, 1367
HpyAV	CCTTC	3 cut(s)	181, 222, 1183
HpyCH4III	ACNGT	2 cut(s)	488, 1024
HpyCH4IV	ACGT	2 cut(s)	756, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 1109
HpyF3I	CTNAG	3 cut(s)	455, 480, 1306
HpySE526I	ACGT	2 cut(s)	756, 1001
Kzo9I	GATC	4 cut(s)	256, 429, 526, 615
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	4 cut(s)	461, 690, 745, 813
LweI	GCATC	3 cut(s)	406, 1059, 1223
MaeII	ACGT	2 cut(s)	756, 1001
MaeIII	GTNAC	2 cut(s)	462, 1309
MalI	GATC	4 cut(s)	258, 431, 528, 617
MboI	GATC	4 cut(s)	256, 429, 526, 615
MboII	GAAGA	5 cut(s)	130, 147, 776, 932, 1405
MfeI	CAATTG	3 cut(s)	507, 738, 911
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	927
MlyI	GAGTC	4 cut(s)	497, 566, 731, 960
MmeI	TCCRAC	2 cut(s)	301, 1240
Mph1103I	ATGCAT	1 cut(s)	1216
MseI	TTAA	8 cut(s)	420, 497, 693, 771, 815, 938, 1083, 1142
MslI	CAYNNNNRTG	1 cut(s)	1186
MspCI	CTTAAG	3 cut(s)	419, 692, 770
MspI	CCGG	4 cut(s)	254, 434, 727, 1361
MspR9I	CCNGG	8 cut(s)	96, 254, 434, 639, 727, 857, 1047, 1362
MunI	CAATTG	3 cut(s)	507, 738, 911
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	4 cut(s)	96, 639, 857, 1047
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	2 cut(s)	414, 1109
NciI	CCSGG	4 cut(s)	254, 434, 727, 1362
NdeII	GATC	4 cut(s)	256, 429, 526, 615
NlaIV	GGNNCC	2 cut(s)	352, 1329
NruI	TCGCGA	1 cut(s)	836
NsiI	ATGCAT	1 cut(s)	1216
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	2 cut(s)	843, 1057
PaqCI	CACCTGC	1 cut(s)	1311
PciSI	GCTCTTC	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	959
PflMI	CCANNNNNTGG	1 cut(s)	119
PfoI	TCCNGGA	2 cut(s)	432, 725
PkrI	GCNGC	4 cut(s)	451, 705, 735, 828
PleI	GAGTC	4 cut(s)	497, 565, 730, 960
PpsI	GAGTC	4 cut(s)	497, 565, 730, 960
Ppu21I	YACGTR	1 cut(s)	757
PsiI	TTATAA	1 cut(s)	35
Psp6I	CCWGG	4 cut(s)	94, 637, 855, 1045
PspFI	CCCAGC	1 cut(s)	1147
PspGI	CCWGG	4 cut(s)	94, 637, 855, 1045
PspN4I	GGNNCC	2 cut(s)	352, 1329
PspPI	GGNCC	3 cut(s)	200, 391, 407
PsrI	GAACNNNNNNTAC	4 cut(s)	775, 807, 1255, 1287
PstI	CTGCAG	1 cut(s)	708
PsuI	RGATCY	1 cut(s)	256
RruI	TCGCGA	1 cut(s)	836
RsaI	GTAC	4 cut(s)	371, 490, 983, 1137
RsaNI	GTAC	4 cut(s)	370, 489, 982, 1136
RseI	CAYNNNNRTG	1 cut(s)	1186
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	8 cut(s)	420, 497, 693, 771, 815, 938, 1083, 1142
SatI	GCNGC	4 cut(s)	450, 704, 734, 827
Sau3AI	GATC	4 cut(s)	256, 429, 526, 615
Sau96I	GGNCC	3 cut(s)	200, 391, 407
SchI	GAGTC	4 cut(s)	497, 566, 731, 960
ScrFI	CCNGG	8 cut(s)	96, 254, 434, 639, 727, 857, 1047, 1362
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	3 cut(s)	406, 1059, 1223
SfcI	CTRYAG	1 cut(s)	704
SfuI	TTCGAA	2 cut(s)	843, 1057
SinI	GGWCC	2 cut(s)	200, 391
SmiMI	CAYNNNNRTG	1 cut(s)	1186
SmlI	CTYRAG	4 cut(s)	380, 419, 692, 770
SmoI	CTYRAG	4 cut(s)	380, 419, 692, 770
StyD4I	CCNGG	8 cut(s)	94, 252, 432, 637, 725, 855, 1045, 1360
TaaI	ACNGT	2 cut(s)	488, 1024
TaiI	ACGT	2 cut(s)	759, 1004
TaqI	TCGA	3 cut(s)	750, 843, 1057
TatI	WGTACW	3 cut(s)	369, 488, 981
TfiI	GAWTC	1 cut(s)	959
Tru1I	TTAA	8 cut(s)	420, 497, 693, 771, 815, 938, 1083, 1142
Tru9I	TTAA	8 cut(s)	420, 497, 693, 771, 815, 938, 1083, 1142
TscAI	CASTG	3 cut(s)	538, 1071, 1307
TseI	GCWGC	4 cut(s)	449, 703, 733, 826
TspDTI	ATGAA	6 cut(s)	163, 592, 890, 1007, 1216, 1376
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	3 cut(s)	538, 1071, 1307
Van91I	CCANNNNNTGG	1 cut(s)	119
Vha464I	CTTAAG	3 cut(s)	419, 692, 770
VpaK11BI	GGWCC	2 cut(s)	200, 391
XapI	RAATTY	5 cut(s)	289, 952, 995, 1079, 1268
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1225
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.