Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Forward (+)

1016713 .. 1019692

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTTGTCTCTGTGCATTGTAGCATTAGTTGCTCTAGCCATTTCACATTGGATTTATAGGTGGTGGAATCCCAGATGCAATGGCAAACTTCCACCTGGTTCAATGGGTTTGCCACTAATAGGAGAGAGCTTACACTTCTTCAGTCCCAGCACCTCTTTTGATATTTCTCCATTCATCAAGAAAAGGATGGAAAGATTTGGGCCAATATTCAAGACTAGTTTGGTGGGAAGACCACTTATAGTATCGACGGATCCAGATTTCAATCACTATATCTTCCAACAAGAGAATAAGTTGTTTCAATGCTGGTATCCAGATTCCGTCAGAGAGATTCTTGGCCGAGAAAATATGGCTGCATTGCATGGGTTTATTCACATATACGTCAAGAAAATGGTGCTTAACCTTGTTGGCCCTGAAAACCTGAAAGACATGCTGCCTGAAATTCAACAAGTAGCAGAAAGAACATTGCAGCAATGGTCACATGCAGACAGCATAGAACTGAAAGAAGCATCTGCAAGTATGATATTTGGCCTCACCGCAAAGAAGCTCATCAGTTATGATTCAAACGAGTCGAATGAAGATATAAGGGGAAATTATGATTCATTCATACGCGGACTGATATCGTTTCCTTTGGACGTCCCTGGAACAGCTTTTCACGAGTCTTTACAGGGTAGGAAAAGAGTGTTGAGCAGACTGAAAAACATGCTACATGAAAGACGAGAAAAGTTGGTGAAGCAGCCAGTAGATTTTTTCGATTACGTGATTGAAGAACTTGACAAGGATGGAACACTCCTAACAGAGGGAATGTCGCTAGATTTGATGTTTTTGCTACTCTTCGCCAGCTTTGAAACAACGTCGGTAGCTATGACTTTAGCCCTCAAGTTTCTTTCCGACCACCCTCTGGCTCTGAAACAACTAACGGAAGAGCATGAAATGATTTTAAAACAAAGGGTTGATGCTGATTCTGGACTTACTTGGGAAGAATACAAATCAATGACTTTCACATTTCAGTTCATTAATGAAACGGTTAGACTTGCAAATATAGCTCCGGGCATCTTCCGCAAGACTATGAGCCAAATTAGTTTCAAGGGATATACCATTCCAGCTGGTTGGACGGTTATGGTTTGTCCCCCAGCAATACACTTGAATCCAGCAATATATGAAAATCCTCTAGATTTCAATCCATGGAGATGGGAGGGAATGGGGAGAAATGATGCATCCAAAAACTTCATGGCTTTCGGTGGTGGCATGAGATTCTGCGTCGGAGCAGACTTTGCTAAGGTGCAGGTAGCTGTATTCCTCCATTGTTTGCTTACCAAGTACAGGTGGAAAGCAATTAGAGGAGGCAATATAGTTCGAACTCCTGGTATACAATTTCCTGATGGTTTCCACATCCAGATACTGAAGAAAGATATATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

473

Amino Acids

53.97

Weight (kDa)

8.07

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 450	9.2e-57	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	1273
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	1366
AccII	CGCG	1 cut(s)	609
AciI	CCGC	3 cut(s)	534, 609, 1057
AclWI	GGATC	2 cut(s)	245, 258
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	1 cut(s)	1319
AfiI	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
AhlI	ACTAGT	1 cut(s)	215
AjnI	CCWGG	3 cut(s)	94, 637, 1360
AluBI	AGCT	8 cut(s)	129, 544, 647, 840, 860, 1043, 1103, 1289
AluI	AGCT	8 cut(s)	129, 544, 647, 840, 860, 1043, 1103, 1289
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	245, 258
AlwNI	CAGNNNCTG	1 cut(s)	1399
AoxI	GGCC	4 cut(s)	200, 334, 406, 526
ApeKI	GCWGC	4 cut(s)	350, 430, 466, 733
ApoI	RAATTY	1 cut(s)	438
AseI	ATTAAT	1 cut(s)	1014
AspS9I	GGNCC	2 cut(s)	200, 407
AsuC2I	CCSGG	1 cut(s)	1047
AsuHPI	GGTGA	2 cut(s)	523, 739
AsuII	TTCGAA	1 cut(s)	1354
BamHI	GGATCC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	235
BbvI	GCAGC	4 cut(s)	337, 417, 478, 745
BccI	CCATC	4 cut(s)	181, 773, 1182, 1373
BciT130I	CCWGG	3 cut(s)	96, 639, 1362
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	1047
BcoDI	GTCTC	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	4 cut(s)	35, 216, 809, 1169
BfuAI	ACCTGC	1 cut(s)	1273
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	4 cut(s)	351, 431, 467, 734
BlsI	GCNGC	4 cut(s)	352, 432, 468, 735
Bme1390I	CCNGG	4 cut(s)	96, 639, 1047, 1362
BmgT120I	GGNCC	2 cut(s)	200, 407
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	4 cut(s)	96, 639, 1047, 1362
BmsI	GCATC	6 cut(s)	65, 515, 943, 1059, 1201, 1223
BpiI	GAAGAC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	1275
Bpu14I	TTCGAA	1 cut(s)	1354
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	1 cut(s)	1047
BsaAI	YACGTR	1 cut(s)	757
BsaBI	GATNNNNATC	2 cut(s)	261, 1176
BsaHI	GRCGYC	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	637, 1181
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
Bse1I	ACTGG	1 cut(s)	737
Bse3DI	GCAATG	4 cut(s)	85, 353, 461, 476
Bse8I	GATNNNNATC	2 cut(s)	261, 1176
BseBI	CCWGG	3 cut(s)	96, 639, 1362
BseDI	CCNNGG	2 cut(s)	637, 1181
BseGI	GGATG	4 cut(s)	192, 784, 1214, 1389
BseJI	GATNNNNATC	2 cut(s)	261, 1176
BseLI	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
BseMI	GCAATG	4 cut(s)	85, 353, 461, 476
BseNI	ACTGG	1 cut(s)	737
BseRI	GAGGAG	1 cut(s)	1353
BseXI	GCAGC	4 cut(s)	337, 417, 478, 745
BseYI	CCCAGC	2 cut(s)	146, 1129
BsgI	GTGCAG	1 cut(s)	1301
Bsh1236I	CGCG	1 cut(s)	609
BshFI	GGCC	4 cut(s)	202, 336, 408, 528
BsiSI	CCGG	1 cut(s)	1046
BslFI	GGGAC	3 cut(s)	129, 620, 1110
BslI	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	3 cut(s)	129, 620, 1110
BsnI	GGCC	4 cut(s)	202, 336, 408, 528
Bsp119I	TTCGAA	1 cut(s)	1354
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	1181
BspACI	CCGC	3 cut(s)	534, 609, 1057
BspANI	GGCC	4 cut(s)	202, 336, 408, 528
BspFNI	CGCG	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	1273
BspPI	GGATC	2 cut(s)	245, 258
BspQI	GCTCTTC	1 cut(s)	915
BspT104I	TTCGAA	1 cut(s)	1354
BsrDI	GCAATG	4 cut(s)	85, 353, 461, 476
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	2 cut(s)	637, 1181
BssMI	GATC	1 cut(s)	250
BssNAI	GTATAC	1 cut(s)	1367
BssNI	GRCGYC	1 cut(s)	633
BssSI	CACGAG	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	1181
Bst1107I	GTATAC	1 cut(s)	1367
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	3 cut(s)	96, 639, 1362
Bst4CI	ACNGT	2 cut(s)	1024, 1114
Bst6I	CTCTTC	2 cut(s)	836, 915
BstACI	GRCGYC	1 cut(s)	633
BstAPI	GCANNNNNTGC	2 cut(s)	29, 1271
BstBAI	YACGTR	1 cut(s)	757
BstBI	TTCGAA	1 cut(s)	1354
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	1 cut(s)	1275
BstDSI	CCRYGG	1 cut(s)	1181
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstF5I	GGATG	4 cut(s)	192, 784, 1214, 1389
BstFNI	CGCG	1 cut(s)	609
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 1040, 1056, 1271
BstNI	CCWGG	3 cut(s)	96, 639, 1362
BstNSI	RCATGY	3 cut(s)	430, 482, 703
BstSCI	CCNGG	4 cut(s)	94, 637, 1045, 1360
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	4 cut(s)	337, 417, 478, 745
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	2 cut(s)	1107, 1188
BstYI	RGATCY	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	1367
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	202, 336, 408, 528
BtgI	CCRYGG	1 cut(s)	1181
BtsCI	GGATG	4 cut(s)	192, 784, 1214, 1389
BveI	ACCTGC	1 cut(s)	1273
Cac8I	GCNNGC	1 cut(s)	838
CaiI	CAGNNNCTG	1 cut(s)	1399
Cfr13I	GGNCC	2 cut(s)	200, 407
CseI	GACGC	1 cut(s)	1246
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	1318
CviAII	CATG	9 cut(s)	359, 427, 479, 700, 707, 926, 1182, 1228, 1246
CviQI	GTAC	1 cut(s)	1318
DdeI	CTNAG	1 cut(s)	1275
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DraI	TTTAAA	1 cut(s)	939
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	836, 915
EarI	CTCTTC	2 cut(s)	836, 915
Eco130I	CCWWGG	1 cut(s)	1181
Eco32I	GATATC	1 cut(s)	618
Eco57I	CTGAAG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoRII	CCWGG	3 cut(s)	94, 637, 1360
EcoRV	GATATC	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	1181
EcoT22I	ATGCAT	1 cut(s)	1216
ErhI	CCWWGG	1 cut(s)	1181
FaeI	CATG	9 cut(s)	362, 430, 482, 703, 710, 929, 1185, 1231, 1249
FaqI	GGGAC	3 cut(s)	129, 620, 1110
FatI	CATG	9 cut(s)	358, 426, 478, 699, 706, 925, 1181, 1227, 1245
FblI	GTMKAC	1 cut(s)	1366
Fnu4HI	GCNGC	4 cut(s)	351, 431, 467, 734
FokI	GGATG	4 cut(s)	199, 791, 1201, 1376
Fsp4HI	GCNGC	4 cut(s)	351, 431, 467, 734
FspBI	CTAG	4 cut(s)	35, 216, 809, 1169
GluI	GCNGC	4 cut(s)	351, 431, 467, 734
GsaI	CCCAGC	2 cut(s)	150, 1133
HaeIII	GGCC	4 cut(s)	202, 336, 408, 528
HapII	CCGG	1 cut(s)	1046
HgaI	GACGC	1 cut(s)	1246
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	9 cut(s)	362, 430, 482, 703, 710, 929, 1185, 1231, 1249
HpaII	CCGG	1 cut(s)	1046
HphI	GGTGA	2 cut(s)	523, 739
Hpy166II	GTNNAC	1 cut(s)	1367
Hpy188I	TCNGA	4 cut(s)	323, 889, 906, 1262
Hpy8I	GTNNAC	1 cut(s)	1367
Hpy99I	CGWCG	3 cut(s)	250, 856, 1262
HpyCH4III	ACNGT	2 cut(s)	1024, 1114
HpyCH4IV	ACGT	4 cut(s)	378, 633, 756, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 1040, 1056, 1271
HpyF3I	CTNAG	1 cut(s)	1275
HpySE526I	ACGT	4 cut(s)	378, 633, 756, 851
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	9 cut(s)	362, 430, 482, 703, 710, 929, 1185, 1231, 1249
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	2 cut(s)	1048, 1262
Lsp1109I	GCAGC	4 cut(s)	337, 417, 478, 745
LweI	GCATC	6 cut(s)	65, 515, 943, 1059, 1201, 1223
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	4 cut(s)	35, 216, 809, 1169
MaeII	ACGT	4 cut(s)	378, 633, 756, 851
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	5 cut(s)	438, 589, 1074, 1332, 1370
MlyI	GAGTC	2 cut(s)	575, 665
MmeI	TCCRAC	4 cut(s)	301, 912, 1088, 1240
Mph1103I	ATGCAT	1 cut(s)	1216
MseI	TTAA	3 cut(s)	396, 938, 1014
MslI	CAYNNNNRTG	1 cut(s)	1186
MspA1I	CMGCKG	1 cut(s)	1103
MspI	CCGG	1 cut(s)	1046
MspR9I	CCNGG	4 cut(s)	96, 639, 1047, 1362
MvaI	CCWGG	3 cut(s)	96, 639, 1362
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	4 cut(s)	29, 1040, 1056, 1271
NciI	CCSGG	1 cut(s)	1047
NcoI	CCATGG	1 cut(s)	1181
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	9 cut(s)	362, 430, 482, 703, 710, 929, 1185, 1231, 1249
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	474
NsiI	ATGCAT	1 cut(s)	1216
NspI	RCATGY	3 cut(s)	430, 482, 703
NspV	TTCGAA	1 cut(s)	1354
PciSI	GCTCTTC	1 cut(s)	915
PfeI	GAWTC	8 cut(s)	67, 314, 328, 557, 596, 959, 1144, 1251
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	4 cut(s)	352, 432, 468, 735
PleI	GAGTC	2 cut(s)	574, 664
PpsI	GAGTC	2 cut(s)	574, 664
Ppu21I	YACGTR	1 cut(s)	757
PshBI	ATTAAT	1 cut(s)	1014
Psp6I	CCWGG	3 cut(s)	94, 637, 1360
PspFI	CCCAGC	2 cut(s)	146, 1129
PspGI	CCWGG	3 cut(s)	94, 637, 1360
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	200, 407
PstNI	CAGNNNCTG	1 cut(s)	1399
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	1103
RsaI	GTAC	1 cut(s)	1319
RsaNI	GTAC	1 cut(s)	1318
RseI	CAYNNNNRTG	1 cut(s)	1186
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	3 cut(s)	396, 938, 1014
SatI	GCNGC	4 cut(s)	351, 431, 467, 734
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	200, 407
SchI	GAGTC	2 cut(s)	575, 665
ScrFI	CCNGG	4 cut(s)	96, 639, 1047, 1362
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	6 cut(s)	65, 515, 943, 1059, 1201, 1223
SfuI	TTCGAA	1 cut(s)	1354
SmiMI	CAYNNNNRTG	1 cut(s)	1186
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	5 cut(s)	438, 589, 1074, 1332, 1370
SsiI	CCGC	3 cut(s)	534, 609, 1057
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	4 cut(s)	35, 216, 809, 1169
StyD4I	CCNGG	4 cut(s)	94, 637, 1045, 1360
StyI	CCWWGG	1 cut(s)	1181
TaaI	ACNGT	2 cut(s)	1024, 1114
TaiI	ACGT	4 cut(s)	381, 636, 759, 854
TaqI	TCGA	4 cut(s)	245, 569, 750, 1354
TasI	AATT	5 cut(s)	438, 589, 1074, 1332, 1370
TatI	WGTACW	1 cut(s)	1317
TfiI	GAWTC	8 cut(s)	67, 314, 328, 557, 596, 959, 1144, 1251
Tru1I	TTAA	3 cut(s)	396, 938, 1014
Tru9I	TTAA	3 cut(s)	396, 938, 1014
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	4 cut(s)	350, 430, 466, 733
Tsp45I	GTSAC	1 cut(s)	474
TspGWI	ACGGA	3 cut(s)	263, 307, 932
Van91I	CCANNNNNTGG	1 cut(s)	898
VspI	ATTAAT	1 cut(s)	1014
XagI	CCTNNNNNAGG	1 cut(s)	794
XapI	RAATTY	1 cut(s)	438
XbaI	TCTAGA	1 cut(s)	1168
XceI	RCATGY	3 cut(s)	430, 482, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1225
XmiI	GTMKAC	1 cut(s)	1366
XspI	CTAG	4 cut(s)	35, 216, 809, 1169
ZraI	GACGTC	1 cut(s)	634
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.