Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

8844411 .. 8847733

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1066300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGTGGGCATTGTGCATGGCAGCCTTAGTTCTTATAAGCATAACACATTGGGTTTACAGGTGGAGGAATCCCAAATGCAATGGAGAACTTCCACCAGGTTCAATGGGATTGCCATTACTTGGGGAGAGCTTGCAGTTTTTCACTCCCACAACCTCATCTGATATTCCTCCCTTCATCAAGAAAAGGATGCAAAGATATGGGCCAATATTCAAAACTAGTTTGGTGGGAAGACAACTCATAGTATCAACAGACCCAGATTTCAATCACTATATCTTCCAACAAGATGATAAGTTGTTTCTAAGCTGGTATCCAGACACCTTCAAAGAAGTTATGGGCAAGGAAAACATGGGTACCCTGTACGGTTACATTCACAAATATGTCAAGAACATGGTGTTTGATCTTGTTGGCCCTGAAAGCCTAAAAAGGATGCTCCCTGAAATCGAACAGGAAATGGAGAAAAAATTGCAGCAATGGTCGTGTCAGGACATTACAGAATTGAAAGACGAATGTGCTAATTTGATATTTGATCTGAATGCAAAGAAACTCATTAGTTATGATTCAAAAACATCTTCGGATAATCTCAGGGAAAACTTCGATGAGTTCATTCGGGGATTGATTTCCTTTCCTTTAGGCATCCCCGGAACAGCTTATCACAAATGTTTACAGGGAAGAAAACGGGCAATGAGGGTGCTGCAAAACTTGCTGCAGGAAAGACGAGGAAAGTCCCGACAGCAGCCCATCGACTTTTTCGATTACTTGATCGAAGAGTCTGACAAAGAGGGGACGCTCATGACAGACGAAATTTCTCTAGATTTGATTTTTTTGCTGCTTTTTGCAAGCTTTGAAACAACCTCAACTGCTATAACTCTTGCCGTCAAGCTTCTTTCAGACCATCCTCGGGCGCTTGAGCAATTGACGGAAGAACATGAAATGATTTTAAAACAAAGGGAAAATTCAGATTCAGGACTTACATGGAAAGAATATAAATCAATGACATTTACATTACAGTCCATTAACGAAACGATTAGGCTGGCAAATATAGTTCCAGGCATCTTTCGAAAAGCAGCAACAGATATAAATTACAAGGGGTATACTATTCCAGCTGGTTGGGGAGTTATGGTTTGTCCCCCAGCGGTTCACATGAACCCAGAAACATATGATGATCCTTTGGCATTCAATCCATGGAGATGGGAGGGAATGCAAATACACACCGCATCCAGAAATTTCATGGCCTTTGGTGGGGGCATGAGATTCTGCGCAGGAGCGGACTCTGCTAAGGTGCATATGGCTGTGTTTCTCCATTGCTTAGTTACAAAGTACAGGTGGGAAGCAATTAGAGGAGGAAATATAGTCCGAACTCCCGGTCTACAATTTCCGGAAGGTTTTCACATTCGAATGAAAGAGAAAGAATCAAGCAACAGGAAACAACCTATAAGTCTTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

483

Amino Acids

55.48

Weight (kDa)

7.16

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 452	2e-58	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	1258
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	1265
AccI	GTMKAC	2 cut(s)	1091, 1366
AccIII	TCCGGA	1 cut(s)	1375
AciI	CCGC	3 cut(s)	1133, 1212, 1265
AclWI	GGATC	1 cut(s)	1157
AcsI	RAATTY	3 cut(s)	801, 952, 1222
AfaI	GTAC	3 cut(s)	352, 359, 1319
AfiI	CCNNNNNNNGG	3 cut(s)	119, 898, 1239
AgsI	TTSAA	8 cut(s)	102, 211, 262, 322, 499, 561, 845, 1177
AhlI	ACTAGT	1 cut(s)	215
AjnI	CCWGG	2 cut(s)	94, 1045
AluBI	AGCT	6 cut(s)	129, 303, 647, 840, 880, 1103
AluI	AGCT	6 cut(s)	129, 303, 647, 840, 880, 1103
Alw26I	GTCTC	1 cut(s)	1436
AlwI	GGATC	1 cut(s)	1157
Ama87I	CYCGRG	1 cut(s)	897
Aor13HI	TCCGGA	1 cut(s)	1375
AoxI	GGCC	3 cut(s)	200, 406, 1230
ApeKI	GCWGC	7 cut(s)	20, 466, 691, 703, 733, 826, 1064
ApoI	RAATTY	3 cut(s)	801, 952, 1222
ArsI	GACNNNNNNTTYG	2 cut(s)	1348, 1380
Asp700I	GAANNNNTTC	1 cut(s)	1383
Asp718I	GGTACC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	904, 1259
AspS9I	GGNCC	2 cut(s)	200, 407
AsuC2I	CCSGG	2 cut(s)	639, 1362
AsuII	TTCGAA	2 cut(s)	1057, 1393
AvaI	CYCGRG	1 cut(s)	897
BaeI	ACNNNNGTAYC	2 cut(s)	334, 367
BanI	GGYRCC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	235
BbvI	GCAGC	7 cut(s)	32, 478, 678, 690, 745, 813, 1076
BccI	CCATC	3 cut(s)	746, 900, 1182
BceAI	ACGGC	1 cut(s)	857
BciT130I	CCWGG	2 cut(s)	96, 1047
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	2 cut(s)	639, 1362
BcoDI	GTCTC	1 cut(s)	1436
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	2 cut(s)	216, 809
BfmI	CTRYAG	1 cut(s)	704
BfoI	RGCGCY	1 cut(s)	905
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	7 cut(s)	21, 467, 692, 704, 734, 827, 1065
BlsI	GCNGC	7 cut(s)	22, 468, 693, 705, 735, 828, 1066
Bme1390I	CCNGG	4 cut(s)	96, 639, 1047, 1362
BmeT110I	CYCGRG	1 cut(s)	897
BmgT120I	GGNCC	2 cut(s)	200, 407
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	4 cut(s)	96, 639, 1047, 1362
BmsI	GCATC	5 cut(s)	177, 417, 642, 1059, 1223
BpiI	GAAGAC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	1275
Bpu14I	TTCGAA	2 cut(s)	1057, 1393
BpuEI	CTTGAG	1 cut(s)	926
BpuMI	CCSGG	2 cut(s)	639, 1362
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	637, 896, 1181
BsaWI	WCCGGW	1 cut(s)	1375
BsaXI	ACNNNNNCTCC	2 cut(s)	1104, 1134
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 898, 1239
Bse3DI	GCAATG	4 cut(s)	85, 476, 687, 1300
Bse8I	GATNNNNATC	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	1375
BseBI	CCWGG	2 cut(s)	96, 1047
BseDI	CCNNGG	3 cut(s)	637, 896, 1181
BseGI	GGATG	5 cut(s)	192, 432, 633, 892, 1214
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	3 cut(s)	119, 898, 1239
BseMI	GCAATG	4 cut(s)	85, 476, 687, 1300
BseMII	CTCAG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	1353
BseXI	GCAGC	7 cut(s)	32, 478, 678, 690, 745, 813, 1076
BseYI	CCCAGC	1 cut(s)	1129
BshFI	GGCC	3 cut(s)	202, 408, 1232
BshNI	GGYRCC	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	897
BsiSI	CCGG	3 cut(s)	639, 1362, 1376
BslFI	GGGAC	3 cut(s)	709, 796, 1110
BslI	CCNNNNNNNGG	3 cut(s)	119, 898, 1239
BsmAI	GTCTC	1 cut(s)	1436
BsmFI	GGGAC	3 cut(s)	709, 796, 1110
BsmI	GAATGC	3 cut(s)	538, 1172, 1203
BsnI	GGCC	3 cut(s)	202, 408, 1232
BsoBI	CYCGRG	1 cut(s)	897
Bsp119I	TTCGAA	2 cut(s)	1057, 1393
Bsp13I	TCCGGA	1 cut(s)	1375
Bsp143I	GATC	4 cut(s)	397, 526, 759, 1162
Bsp19I	CCATGG	1 cut(s)	1181
BspACI	CCGC	3 cut(s)	1133, 1212, 1265
BspANI	GGCC	3 cut(s)	202, 408, 1232
BspCNI	CTCAG	1 cut(s)	594
BspEI	TCCGGA	1 cut(s)	1375
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	708
BspPI	GGATC	1 cut(s)	1157
BspT104I	TTCGAA	2 cut(s)	1057, 1393
BspT107I	GGYRCC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	1265
BsrDI	GCAATG	4 cut(s)	85, 476, 687, 1300
BssECI	CCNNGG	3 cut(s)	637, 896, 1181
BssMI	GATC	4 cut(s)	397, 526, 759, 1162
BssNAI	GTATAC	1 cut(s)	1092
BssT1I	CCWWGG	1 cut(s)	1181
Bst1107I	GTATAC	1 cut(s)	1092
Bst2UI	CCWGG	2 cut(s)	96, 1047
Bst4CI	ACNGT	2 cut(s)	362, 1008
Bst6I	CTCTTC	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstBI	TTCGAA	2 cut(s)	1057, 1393
BstC8I	GCNNGC	3 cut(s)	131, 838, 1032
BstDEI	CTNAG	5 cut(s)	25, 299, 581, 1275, 1306
BstDSI	CCRYGG	1 cut(s)	1181
BstF5I	GGATG	5 cut(s)	192, 432, 633, 892, 1214
BstH2I	RGCGCY	1 cut(s)	905
BstHHI	GCGC	2 cut(s)	904, 1259
BstKTI	GATC	4 cut(s)	400, 529, 762, 1165
BstMAI	GTCTC	1 cut(s)	1436
BstMBI	GATC	4 cut(s)	397, 526, 759, 1162
BstMWI	GCNNNNNNNGC	3 cut(s)	414, 700, 1271
BstNI	CCWGG	2 cut(s)	96, 1047
BstSCI	CCNGG	4 cut(s)	94, 637, 1045, 1360
BstSFI	CTRYAG	1 cut(s)	704
BstV1I	GCAGC	7 cut(s)	32, 478, 678, 690, 745, 813, 1076
BstV2I	GAAGAC	1 cut(s)	235
BstXI	CCANNNNNNTGG	2 cut(s)	1107, 1188
BstZ17I	GTATAC	1 cut(s)	1092
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	202, 408, 1232
BtgI	CCRYGG	1 cut(s)	1181
BtsCI	GGATG	5 cut(s)	192, 432, 633, 892, 1214
Cac8I	GCNNGC	3 cut(s)	131, 838, 1032
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	2 cut(s)	904, 1259
Cfr13I	GGNCC	2 cut(s)	200, 407
CseI	GACGC	1 cut(s)	793
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	351, 358, 1318
CviQI	GTAC	3 cut(s)	351, 358, 1318
DdeI	CTNAG	5 cut(s)	25, 299, 581, 1275, 1306
DpnI	GATC	4 cut(s)	399, 528, 761, 1164
DpnII	GATC	4 cut(s)	397, 526, 759, 1162
DraI	TTTAAA	1 cut(s)	939
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	1181
Eco88I	CYCGRG	1 cut(s)	897
EcoRII	CCWGG	2 cut(s)	94, 1045
EcoT14I	CCWWGG	1 cut(s)	1181
ErhI	CCWWGG	1 cut(s)	1181
FaqI	GGGAC	3 cut(s)	709, 796, 1110
FauNDI	CATATG	2 cut(s)	1156, 1284
FblI	GTMKAC	2 cut(s)	1091, 1366
Fnu4HI	GCNGC	7 cut(s)	21, 467, 692, 704, 734, 827, 1065
FokI	GGATG	5 cut(s)	199, 439, 620, 879, 1201
Fsp4HI	GCNGC	7 cut(s)	21, 467, 692, 704, 734, 827, 1065
FspBI	CTAG	2 cut(s)	216, 809
FspI	TGCGCA	1 cut(s)	1258
GlaI	GCGC	2 cut(s)	903, 1258
GluI	GCNGC	7 cut(s)	21, 467, 692, 704, 734, 827, 1065
GsaI	CCCAGC	1 cut(s)	1133
HaeII	RGCGCY	1 cut(s)	905
HaeIII	GGCC	3 cut(s)	202, 408, 1232
HapII	CCGG	3 cut(s)	639, 1362, 1376
HgaI	GACGC	1 cut(s)	793
HhaI	GCGC	2 cut(s)	904, 1259
Hin6I	GCGC	2 cut(s)	902, 1257
HinP1I	GCGC	2 cut(s)	902, 1257
HindIII	AAGCTT	2 cut(s)	838, 878
HinfI	GANTC	7 cut(s)	67, 557, 767, 959, 1251, 1268, 1409
HpaII	CCGG	3 cut(s)	639, 1362, 1376
Hpy166II	GTNNAC	5 cut(s)	55, 662, 1092, 1138, 1367
Hpy188I	TCNGA	7 cut(s)	160, 531, 574, 772, 889, 958, 1355
Hpy8I	GTNNAC	5 cut(s)	55, 662, 1092, 1138, 1367
HpyAV	CCTTC	3 cut(s)	181, 328, 1373
HpyCH4III	ACNGT	2 cut(s)	362, 1008
HpyF10VI	GCNNNNNNNGC	3 cut(s)	414, 700, 1271
HpyF3I	CTNAG	5 cut(s)	25, 299, 581, 1275, 1306
HspAI	GCGC	2 cut(s)	902, 1257
Kpn2I	TCCGGA	1 cut(s)	1375
KpnI	GGTACC	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	397, 526, 759, 1162
LmnI	GCTCC	2 cut(s)	435, 1262
Lsp1109I	GCAGC	7 cut(s)	32, 478, 678, 690, 745, 813, 1076
LweI	GCATC	5 cut(s)	177, 417, 642, 1059, 1223
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	2 cut(s)	216, 809
MaeIII	GTNAC	2 cut(s)	362, 1309
MalI	GATC	4 cut(s)	399, 528, 761, 1164
MbiI	CCGCTC	1 cut(s)	1265
MboI	GATC	4 cut(s)	397, 526, 759, 1162
MboII	GAAGA	6 cut(s)	240, 265, 561, 681, 776, 932
MfeI	CAATTG	1 cut(s)	911
MlyI	GAGTC	2 cut(s)	776, 1262
MmeI	TCCRAC	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	1375
MroXI	GAANNNNTTC	1 cut(s)	1383
MseI	TTAA	2 cut(s)	938, 1014
MslI	CAYNNNNRTG	3 cut(s)	375, 1186, 1394
MspA1I	CMGCKG	2 cut(s)	1103, 1133
MspI	CCGG	3 cut(s)	639, 1362, 1376
MspR9I	CCNGG	4 cut(s)	96, 639, 1047, 1362
MunI	CAATTG	1 cut(s)	911
Mva1269I	GAATGC	3 cut(s)	538, 1172, 1203
MvaI	CCWGG	2 cut(s)	96, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	414, 700, 1271
NciI	CCSGG	2 cut(s)	639, 1362
NcoI	CCATGG	1 cut(s)	1181
NdeI	CATATG	2 cut(s)	1156, 1284
NdeII	GATC	4 cut(s)	397, 526, 759, 1162
NlaIV	GGNNCC	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	1258
NspV	TTCGAA	2 cut(s)	1057, 1393
PagI	TCATGA	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PctI	GAATGC	3 cut(s)	538, 1172, 1203
PdmI	GAANNNNTTC	1 cut(s)	1383
PfeI	GAWTC	5 cut(s)	67, 557, 959, 1251, 1409
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	7 cut(s)	22, 468, 693, 705, 735, 828, 1066
PleI	GAGTC	2 cut(s)	775, 1262
PpsI	GAGTC	2 cut(s)	775, 1262
PsiI	TTATAA	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	94, 1045
PspFI	CCCAGC	1 cut(s)	1129
PspGI	CCWGG	2 cut(s)	94, 1045
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	200, 407
PstI	CTGCAG	1 cut(s)	708
PvuII	CAGCTG	1 cut(s)	1103
RsaI	GTAC	3 cut(s)	352, 359, 1319
RsaNI	GTAC	3 cut(s)	351, 358, 1318
RseI	CAYNNNNRTG	3 cut(s)	375, 1186, 1394
SaqAI	TTAA	2 cut(s)	938, 1014
SatI	GCNGC	7 cut(s)	21, 467, 692, 704, 734, 827, 1065
Sau3AI	GATC	4 cut(s)	397, 526, 759, 1162
Sau96I	GGNCC	2 cut(s)	200, 407
SchI	GAGTC	2 cut(s)	776, 1262
ScrFI	CCNGG	4 cut(s)	96, 639, 1047, 1362
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	5 cut(s)	177, 417, 642, 1059, 1223
SfcI	CTRYAG	1 cut(s)	704
SfuI	TTCGAA	2 cut(s)	1057, 1393
SmiMI	CAYNNNNRTG	3 cut(s)	375, 1186, 1394
SmlI	CTYRAG	2 cut(s)	905, 1439
SmoI	CTYRAG	2 cut(s)	905, 1439
SpeI	ACTAGT	1 cut(s)	215
SsiI	CCGC	3 cut(s)	1133, 1212, 1265
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	2 cut(s)	216, 809
StyD4I	CCNGG	4 cut(s)	94, 637, 1045, 1360
StyI	CCWWGG	1 cut(s)	1181
TaaI	ACNGT	2 cut(s)	362, 1008
TaqI	TCGA	7 cut(s)	441, 594, 741, 750, 762, 1057, 1393
TatI	WGTACW	1 cut(s)	1317
TfiI	GAWTC	5 cut(s)	67, 557, 959, 1251, 1409
Tru1I	TTAA	2 cut(s)	938, 1014
Tru9I	TTAA	2 cut(s)	938, 1014
TseI	GCWGC	7 cut(s)	20, 466, 691, 703, 733, 826, 1064
TspDTI	ATGAA	6 cut(s)	163, 592, 942, 1157, 1216, 1412
TspGWI	ACGGA	1 cut(s)	932
Van91I	CCANNNNNTGG	1 cut(s)	119
XapI	RAATTY	3 cut(s)	801, 952, 1222
XbaI	TCTAGA	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1225
XmiI	GTMKAC	2 cut(s)	1091, 1366
XmnI	GAANNNNTTC	1 cut(s)	1383
XspI	CTAG	2 cut(s)	216, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.