Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Forward (+)

1054761 .. 1058062

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01640.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTTGTCTCTGTGCATTGTAGCATTAGTTGCCATAGCCATTTCACATTGGATTTATAGGTGGAGAAATCCCAGATGCAGTGGCAAACTTCCACCTGGTTCAATGGGTTTGCCACTCATAGGAGAGAGCTTACACTTCTTCAGTCCCAGCACCTCTTTCGATGTCTCTCCATTCATCAGGAAAAGGACGGAAAGATTTGGGCCAATATTCAAGACTAGTTTGGTGGGACGACCGCTTATAGTATCGACGGATCCAGATTTCAATCACTATATCTTCCAACAAGAGAATAAGTTGTTTCAAAGCTGGTATCCAGATTCCGTCAGAGAGATTCTTGGCCGAGAAAATATGGCTGTGTTGCATGGGTTTCTTCACATATACGTCAAGAAAATGGTGCTTAACCTTGTTGGCCCTGAAAACCTGAAAAACATGCTGCCTGAAATTCAACAAGTAGCAGAAAGAACATTGCAGCAATGGTCATGTGCAGACAGCATAGAACTGAAAGAAGCATCTGCAAGTATGATTTTTGGTCTCACTGCAAAGAAGCTCATCAGTTATGATTCAAATAAGTCGAATGAAGATATAAAGGGAAACTTTGATGCATTCATGAGCGGACTCATATCGTTTCCTTTGGACGTCCCTGGAACAGCTTTTCACGAGTCTTTAAGGGGTAGGAAAAGAGTGTTGAGCACACTGAAAAGCATGCTACAGGAAAGACGAGCAAAGTTAATGAAGCGGCCAATAGATTTTTTCGATTACGTGATTGAGGAACTTGACAAGGATGGAACACTCCTGACAGAGGGAATGTCGTTAGATTTGATGTTTTTGCTACTCTTCGCCAGCTTTGAAACAACGTCGGTAGCTATGACTTTAGCCCTCAAGTTTCTTTCAGACCACCCTCTGGTTCTGAAACAACTAACGGAAGAGCATGAAATGATTTTAGAACAAAGGGTTGATGCTGATTCTGGACTTACTTGGGAAGAATACAAATCAATGACTTTCACATTTCAGTTCATCAATGAAACGGTTAGACTTGCTAATATAGTTCCGGGCATCTTCCGCAAGACTATGAGCCAAATTAGTTTCAAGGGACACACCATTCCAGCTGGTTGGACGGTTATGGTTTGTCCCCCAGCAATGCACTTGAATCCAGCAAAATATGAGAATCCTCTGGATTTCAATCCATGGAGATGGGAGGGAACGGGGAAAAATGGTGCATCCAAAAACTTCATGGCTTTCGGTGGTGGCATGAGATTCTGCGTTGGGGCAGACTTTGCCAAGGTGCAGATAGCTGTATTCCTCCATTGCTTGCTTACCAAGTACAGGTGGAAAGCAATTAGAGGAGGAAATATAGTTCGAACTCCTGGTATACAATTTCCTGATGGTTTCCACATCCAGATACTGAAGAAAGATATATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

473

Amino Acids

53.67

Weight (kDa)

8.9

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 398	2.4e-42	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccBSI	CCGCTC	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	1366
AciI	CCGC	4 cut(s)	233, 609, 733, 1057
AclWI	GGATC	2 cut(s)	245, 258
AcoI	YGGCCR	2 cut(s)	334, 734
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	1 cut(s)	1319
AfiI	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
AhlI	ACTAGT	1 cut(s)	215
AjnI	CCWGG	3 cut(s)	94, 637, 1360
AloI	GAACNNNNNNTCC	2 cut(s)	1335, 1367
AluBI	AGCT	8 cut(s)	129, 303, 544, 647, 840, 860, 1103, 1289
AluI	AGCT	8 cut(s)	129, 303, 544, 647, 840, 860, 1103, 1289
Alw21I	GWGCWC	1 cut(s)	689
Alw26I	GTCTC	3 cut(s)	12, 169, 533
AlwI	GGATC	2 cut(s)	245, 258
AlwNI	CAGNNNCTG	1 cut(s)	1399
AoxI	GGCC	4 cut(s)	200, 334, 406, 734
ApeKI	GCWGC	2 cut(s)	430, 466
ApoI	RAATTY	1 cut(s)	438
AspS9I	GGNCC	2 cut(s)	200, 407
AsuC2I	CCSGG	1 cut(s)	1047
AsuII	TTCGAA	1 cut(s)	1354
BamHI	GGATCC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	2 cut(s)	417, 478
BccI	CCATC	3 cut(s)	773, 1182, 1373
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	3 cut(s)	96, 639, 1362
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	1047
BcoDI	GTCTC	3 cut(s)	12, 169, 533
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	704
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	3 cut(s)	431, 467, 734
BlsI	GCNGC	3 cut(s)	432, 468, 735
Bme1390I	CCNGG	4 cut(s)	96, 639, 1047, 1362
BmgT120I	GGNCC	2 cut(s)	200, 407
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	4 cut(s)	96, 639, 1047, 1362
BmsI	GCATC	6 cut(s)	65, 515, 586, 943, 1059, 1223
Bpu14I	TTCGAA	1 cut(s)	1354
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	1 cut(s)	1047
BsaAI	YACGTR	1 cut(s)	757
BsaBI	GATNNNNATC	2 cut(s)	261, 1176
BsaHI	GRCGYC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	637, 1181, 1275
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
Bse3DI	GCAATG	4 cut(s)	461, 476, 1140, 1300
Bse8I	GATNNNNATC	2 cut(s)	261, 1176
BseBI	CCWGG	3 cut(s)	96, 639, 1362
BseDI	CCNNGG	3 cut(s)	637, 1181, 1275
BseGI	GGATG	3 cut(s)	784, 1214, 1389
BseJI	GATNNNNATC	2 cut(s)	261, 1176
BseLI	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
BseMI	GCAATG	4 cut(s)	461, 476, 1140, 1300
BseRI	GAGGAG	1 cut(s)	1353
BseXI	GCAGC	2 cut(s)	417, 478
BseYI	CCCAGC	2 cut(s)	146, 1129
BsgI	GTGCAG	2 cut(s)	501, 1301
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	4 cut(s)	202, 336, 408, 736
BsiEI	CGRYCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	1046
BslFI	GGGAC	5 cut(s)	129, 240, 620, 1101, 1110
BslI	CCNNNNNNNGG	4 cut(s)	119, 796, 898, 1320
BsmAI	GTCTC	3 cut(s)	12, 169, 533
BsmFI	GGGAC	5 cut(s)	129, 240, 620, 1101, 1110
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	4 cut(s)	202, 336, 408, 736
Bso31I	GGTCTC	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	1354
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	1181
BspACI	CCGC	4 cut(s)	233, 609, 733, 1057
BspANI	GGCC	4 cut(s)	202, 336, 408, 736
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	245, 258
BspQI	GCTCTTC	1 cut(s)	915
BspT104I	TTCGAA	1 cut(s)	1354
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	609
BsrDI	GCAATG	4 cut(s)	461, 476, 1140, 1300
BssECI	CCNNGG	3 cut(s)	637, 1181, 1275
BssMI	GATC	1 cut(s)	250
BssNAI	GTATAC	1 cut(s)	1367
BssNI	GRCGYC	1 cut(s)	633
BssSI	CACGAG	1 cut(s)	653
BssT1I	CCWWGG	2 cut(s)	1181, 1275
Bst1107I	GTATAC	1 cut(s)	1367
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	3 cut(s)	96, 639, 1362
Bst4CI	ACNGT	2 cut(s)	1024, 1114
Bst6I	CTCTTC	2 cut(s)	836, 915
BstACI	GRCGYC	1 cut(s)	633
BstAPI	GCANNNNNTGC	2 cut(s)	29, 1271
BstBAI	YACGTR	1 cut(s)	757
BstBI	TTCGAA	1 cut(s)	1354
BstC8I	GCNNGC	3 cut(s)	701, 838, 1307
BstDSI	CCRYGG	1 cut(s)	1181
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstF5I	GGATG	3 cut(s)	784, 1214, 1389
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	3 cut(s)	12, 169, 533
BstMBI	GATC	1 cut(s)	250
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 1056, 1271
BstNI	CCWGG	3 cut(s)	96, 639, 1362
BstNSI	RCATGY	2 cut(s)	430, 703
BstSCI	CCNGG	4 cut(s)	94, 637, 1045, 1360
BstSFI	CTRYAG	1 cut(s)	704
BstV1I	GCAGC	2 cut(s)	417, 478
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	2 cut(s)	1107, 1188
BstYI	RGATCY	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	1367
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	202, 336, 408, 736
BtgI	CCRYGG	1 cut(s)	1181
BtsCI	GGATG	3 cut(s)	784, 1214, 1389
BtsI	GCAGTG	2 cut(s)	85, 531
BtsIMutI	CAGTG	3 cut(s)	85, 531, 689
Cac8I	GCNNGC	3 cut(s)	701, 838, 1307
CaiI	CAGNNNCTG	1 cut(s)	1399
CciI	TCATGA	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	200, 407
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	1318
CviAII	CATG	9 cut(s)	359, 427, 477, 604, 700, 926, 1182, 1228, 1246
CviQI	GTAC	1 cut(s)	1318
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	334, 734
Eam1104I	CTCTTC	2 cut(s)	836, 915
EarI	CTCTTC	2 cut(s)	836, 915
Eco130I	CCWWGG	2 cut(s)	1181, 1275
Eco31I	GGTCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoRII	CCWGG	3 cut(s)	94, 637, 1360
EcoT14I	CCWWGG	2 cut(s)	1181, 1275
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	2 cut(s)	1181, 1275
FaeI	CATG	9 cut(s)	362, 430, 480, 607, 703, 929, 1185, 1231, 1249
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	5 cut(s)	129, 240, 620, 1101, 1110
FatI	CATG	9 cut(s)	358, 426, 476, 603, 699, 925, 1181, 1227, 1245
FblI	GTMKAC	1 cut(s)	1366
Fnu4HI	GCNGC	3 cut(s)	431, 467, 734
FokI	GGATG	3 cut(s)	791, 1201, 1376
Fsp4HI	GCNGC	3 cut(s)	431, 467, 734
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	3 cut(s)	431, 467, 734
GsaI	CCCAGC	2 cut(s)	150, 1133
HaeIII	GGCC	4 cut(s)	202, 336, 408, 736
HapII	CCGG	1 cut(s)	1046
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	9 cut(s)	362, 430, 480, 607, 703, 929, 1185, 1231, 1249
HinfI	GANTC	9 cut(s)	314, 328, 557, 612, 656, 959, 1144, 1162, 1251
HpaII	CCGG	1 cut(s)	1046
Hpy166II	GTNNAC	1 cut(s)	1367
Hpy188I	TCNGA	3 cut(s)	323, 889, 906
Hpy8I	GTNNAC	1 cut(s)	1367
Hpy99I	CGWCG	2 cut(s)	250, 856
HpyCH4III	ACNGT	2 cut(s)	1024, 1114
HpyCH4IV	ACGT	4 cut(s)	378, 633, 756, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 1056, 1271
HpySE526I	ACGT	4 cut(s)	378, 633, 756, 851
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	9 cut(s)	362, 430, 480, 607, 703, 929, 1185, 1231, 1249
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	915
Lsp1109I	GCAGC	2 cut(s)	417, 478
LweI	GCATC	6 cut(s)	65, 515, 586, 943, 1059, 1223
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	4 cut(s)	378, 633, 756, 851
MalI	GATC	1 cut(s)	252
MbiI	CCGCTC	1 cut(s)	609
MboI	GATC	1 cut(s)	250
MboII	GAAGA	9 cut(s)	130, 265, 359, 587, 823, 932, 989, 1045, 1414
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	4 cut(s)	438, 1074, 1332, 1370
MlyI	GAGTC	2 cut(s)	606, 665
MmeI	TCCRAC	2 cut(s)	301, 1088
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	3 cut(s)	396, 662, 725
MslI	CAYNNNNRTG	1 cut(s)	1186
MspA1I	CMGCKG	1 cut(s)	1103
MspI	CCGG	1 cut(s)	1046
MspR9I	CCNGG	4 cut(s)	96, 639, 1047, 1362
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	3 cut(s)	96, 639, 1362
MwoI	GCNNNNNNNGC	3 cut(s)	29, 1056, 1271
NciI	CCSGG	1 cut(s)	1047
NcoI	CCATGG	1 cut(s)	1181
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	9 cut(s)	362, 430, 480, 607, 703, 929, 1185, 1231, 1249
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	2 cut(s)	430, 703
NspV	TTCGAA	1 cut(s)	1354
PaeI	GCATGC	1 cut(s)	703
PagI	TCATGA	1 cut(s)	603
PciSI	GCTCTTC	1 cut(s)	915
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	7 cut(s)	314, 328, 557, 959, 1144, 1162, 1251
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	3 cut(s)	432, 468, 735
PleI	GAGTC	2 cut(s)	606, 664
PpsI	GAGTC	2 cut(s)	606, 664
Ppu21I	YACGTR	1 cut(s)	757
Psp6I	CCWGG	3 cut(s)	94, 637, 1360
PspFI	CCCAGC	2 cut(s)	146, 1129
PspGI	CCWGG	3 cut(s)	94, 637, 1360
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	200, 407
PstNI	CAGNNNCTG	1 cut(s)	1399
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	1103
RsaI	GTAC	1 cut(s)	1319
RsaNI	GTAC	1 cut(s)	1318
RseI	CAYNNNNRTG	1 cut(s)	1186
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	3 cut(s)	396, 662, 725
SatI	GCNGC	3 cut(s)	431, 467, 734
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	200, 407
SchI	GAGTC	2 cut(s)	606, 665
ScrFI	CCNGG	4 cut(s)	96, 639, 1047, 1362
SduI	GDGCHC	1 cut(s)	689
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	6 cut(s)	65, 515, 586, 943, 1059, 1223
SfcI	CTRYAG	1 cut(s)	704
SfuI	TTCGAA	1 cut(s)	1354
SmiMI	CAYNNNNRTG	1 cut(s)	1186
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
SpeI	ACTAGT	1 cut(s)	215
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	4 cut(s)	438, 1074, 1332, 1370
SsiI	CCGC	4 cut(s)	233, 609, 733, 1057
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	4 cut(s)	94, 637, 1045, 1360
StyI	CCWWGG	2 cut(s)	1181, 1275
TaaI	ACNGT	2 cut(s)	1024, 1114
TaiI	ACGT	4 cut(s)	381, 636, 759, 854
TaqI	TCGA	5 cut(s)	159, 245, 569, 750, 1354
TasI	AATT	4 cut(s)	438, 1074, 1332, 1370
TatI	WGTACW	1 cut(s)	1317
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	7 cut(s)	314, 328, 557, 959, 1144, 1162, 1251
Tru1I	TTAA	3 cut(s)	396, 662, 725
Tru9I	TTAA	3 cut(s)	396, 662, 725
TscAI	CASTG	3 cut(s)	85, 538, 696
TseI	GCWGC	2 cut(s)	430, 466
TspDTI	ATGAA	8 cut(s)	163, 588, 592, 743, 942, 1000, 1032, 1216
TspGWI	ACGGA	4 cut(s)	203, 263, 307, 932
TspRI	CASTG	3 cut(s)	85, 538, 696
Van91I	CCANNNNNTGG	1 cut(s)	898
XagI	CCTNNNNNAGG	1 cut(s)	794
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	2 cut(s)	430, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1225
XmiI	GTMKAC	1 cut(s)	1366
XspI	CTAG	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	634
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.