Rroxscaffold_3G00257080

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
51503563 .. 51505803
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257080.1

Sequence Viewer

Length: 1446 bp
ATGTGGGCTTTGTGCTTTGGAGCATTGGTTGTTATAAGCATTACTCATTGGGTTTACAGGTGGAGGAATCCCAAATGCAATGGCAAGCTTCCACCAGGTTCAATGGGATTGCCACTTATTGGGGAGACTTTACAGTTCTTCACTCCCAACACCTCTTCTGATATTCCTCCCTTCATCAAGAAAAGGATGGAAAGGTATGGGCCAATTTTCAGGACTAATTTGGTGGGAAGACCAGTAATAGTATCAACAGACCCGGATCTCAATTACTTTGTATTCCAACAAGAGGGTACTTTGTTTCATAGCTCATATCCTTATACCTTCACGGAGATTTTTGGGAGACAAAACGTAGGTAACTTGCATGGGATCACGTACAAGTACCTCAAGAACATAGTGCTGCATCTCTTTGGCCCTGAAAGCCTTAAAAAGATGATCCCAGAAATTGAAGAGGCAGCACTCAGAAGATTACAACAATGGTCATGTGAGGACACAATAGAATTCAAAGATGCATCTGCAAGTCTGATATTTGATCTTACGGCAAAGAAACTTATCAGTTATGACTCAGAAAAGTGCTCGGAGAAGAATTTACGCAAAAACTTCGTTGCATTCATACAAGGATTGATTTCCTTCCCTGTGGACATCCCTGGAACAGCTTATCACAAATGTTTACAGGAAAAATGCAATGAAAATGTTGGTAAACCTGCTACAGGAAAGACGAGAAAAGCCGCGAAAGCAGCCTATAGATTTTTCGATCACGTGCTTGAAGAACTCAAGAAAGAGGAAACGATGTTAACAGAAGAAATTTTTCTGGATTTAATGTTTGTACTGCTTTTCGCGAGCTTTGAAACAACTTCCCTAGCTCTAACATTAGCCATCAAGTTTCTTTCAGACCATCCTGCAGTGCTAAAGAAATTAGCGGAAGAGCATGGAATGATCATAAAGCAAAGGGAAAATGCTGATGCTGGACTTACATGGAAAGAATACAAATCAATGACATTCACATTTCAGATCATCAACGAAACAGTTAGACTGGCAAATATAGTTCCAGCTATCTTTCGCAAAGCAATAAGAGAGATACAGTTTAAAGGACATACCATTCCAGCAGGTTGGGCAGTAATGGTTTGTCCCCCGGCCGTACACTTAAACCCTCAAAAATATGATGATCCTGTGGCCTTCAATCCAGGGAGATGGGAGGGAATGTTAACAAGTAGTGCATCAAAAAATTTCATGGCTTTTGGCGGTGGCATGAGATTCTGTGTTGGAACAGACTTTGCTAAGGTGCAGATGGCTGTATTTCTGCATTGCTTGGTGACCAAGTACAGGTGGCAAGCAGTGGGGGGAGGAAATATAGTCCGAACTCCGGGTTTACAATTCCCGGATGGTTTTCACATTCGAATACAGGAGAAAGAAGATACAGGTAACGGGAAACAGCAAACTCCAGATGCTTGA

Protein Analysis

481

Amino Acids

54.51

Weight (kDa)

8.93

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 447 4.1e-57 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
Acc36I ACCTGC 2 cut(s) 706, 1091
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 2 cut(s) 725, 833
AciI CCGC 3 cut(s) 723, 914, 1236
AclWI GGATC 4 cut(s) 264, 371, 424, 1154
AcoI YGGCCR 1 cut(s) 1128
AcsI RAATTY 4 cut(s) 494, 580, 798, 1219
AcvI CACGTG 1 cut(s) 754
AfaI GTAC 6 cut(s) 289, 371, 377, 822, 1134, 1316
AfiI CCNNNNNNNGG 5 cut(s) 119, 283, 704, 1317, 1357
AgsI TTSAA 6 cut(s) 102, 443, 499, 761, 842, 1174
AjnI CCWGG 3 cut(s) 94, 640, 1177
AluBI AGCT 6 cut(s) 88, 303, 650, 837, 857, 1046
AluI AGCT 6 cut(s) 88, 303, 650, 837, 857, 1046
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 2 cut(s) 119, 331
AlwI GGATC 4 cut(s) 264, 371, 424, 1154
AoxI GGCC 4 cut(s) 200, 406, 1128, 1167
ApeKI GCWGC 3 cut(s) 394, 449, 731
ApoI RAATTY 4 cut(s) 494, 580, 798, 1219
Asp700I GAANNNNTTC 1 cut(s) 801
AspS9I GGNCC 2 cut(s) 200, 407
AsuC2I CCSGG 4 cut(s) 254, 1127, 1359, 1373
AsuHPI GGTGA 1 cut(s) 1318
AsuII TTCGAA 1 cut(s) 1390
BbrPI CACGTG 1 cut(s) 754
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 3 cut(s) 381, 461, 743
BccI CCATC 6 cut(s) 181, 878, 897, 1179, 1276, 1370
BceAI ACGGC 2 cut(s) 549, 1115
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 3 cut(s) 96, 642, 1179
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 4 cut(s) 254, 1127, 1359, 1373
BcoDI GTCTC 2 cut(s) 119, 331
BfaI CTAG 1 cut(s) 854
BfmI CTRYAG 3 cut(s) 702, 736, 894
BfuAI ACCTGC 2 cut(s) 706, 1091
BisI GCNGC 4 cut(s) 395, 450, 723, 732
BlsI GCNGC 4 cut(s) 396, 451, 724, 733
Bme1390I CCNGG 7 cut(s) 96, 254, 642, 1127, 1179, 1359, 1373
BmgT120I GGNCC 2 cut(s) 200, 407
BmrFI CCNGG 7 cut(s) 96, 254, 642, 1127, 1179, 1359, 1373
BmsI GCATC 6 cut(s) 406, 493, 515, 946, 1220, 1429
BpiI GAAGAC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 1419
Bpu10I CCTNAGC 1 cut(s) 1272
Bpu14I TTCGAA 1 cut(s) 1390
BpuEI CTTGAG 2 cut(s) 365, 752
BpuMI CCSGG 4 cut(s) 254, 1127, 1359, 1373
BsaAI YACGTR 2 cut(s) 369, 754
BsaJI CCNNGG 3 cut(s) 640, 1125, 1178
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 1181, 1211
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 283, 704, 1317, 1357
Bse1I ACTGG 2 cut(s) 233, 1032
Bse3DI GCAATG 3 cut(s) 85, 685, 1297
BseBI CCWGG 3 cut(s) 96, 642, 1179
BseDI CCNNGG 3 cut(s) 640, 1125, 1178
BseGI GGATG 4 cut(s) 192, 636, 889, 1381
BseLI CCNNNNNNNGG 5 cut(s) 119, 283, 704, 1317, 1357
BseMI GCAATG 3 cut(s) 85, 685, 1297
BseMII CTCAG 2 cut(s) 469, 573
BseNI ACTGG 2 cut(s) 233, 1032
BseX3I CGGCCG 1 cut(s) 1128
BseXI GCAGC 3 cut(s) 381, 461, 743
BsgI GTGCAG 1 cut(s) 1298
Bsh1236I CGCG 2 cut(s) 725, 833
Bsh1285I CGRYCG 1 cut(s) 1131
BshFI GGCC 4 cut(s) 202, 408, 1130, 1169
BsiEI CGRYCG 1 cut(s) 1131
BsiHKAI GWGCWC 1 cut(s) 572
BsiSI CCGG 4 cut(s) 254, 1127, 1358, 1373
BslFI GGGAC 1 cut(s) 1107
BslI CCNNNNNNNGG 5 cut(s) 119, 283, 704, 1317, 1357
BsmAI GTCTC 2 cut(s) 119, 331
BsmFI GGGAC 1 cut(s) 1107
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 4 cut(s) 202, 408, 1130, 1169
Bsp119I TTCGAA 1 cut(s) 1390
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
Bsp68I TCGCGA 1 cut(s) 833
BspACI CCGC 3 cut(s) 723, 914, 1236
BspANI GGCC 4 cut(s) 202, 408, 1130, 1169
BspCNI CTCAG 2 cut(s) 468, 572
BspFNI CGCG 2 cut(s) 725, 833
BspMAI CTGCAG 1 cut(s) 898
BspMI ACCTGC 2 cut(s) 706, 1091
BspPI GGATC 4 cut(s) 264, 371, 424, 1154
BspQI GCTCTTC 1 cut(s) 912
BspT104I TTCGAA 1 cut(s) 1390
BsrDI GCAATG 3 cut(s) 85, 685, 1297
BsrI ACTGG 2 cut(s) 233, 1032
BssECI CCNNGG 3 cut(s) 640, 1125, 1178
BssMI GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
Bst2UI CCWGG 3 cut(s) 96, 642, 1179
Bst4CI ACNGT 3 cut(s) 135, 1021, 1077
Bst6I CTCTTC 3 cut(s) 160, 438, 912
BstBAI YACGTR 2 cut(s) 369, 754
BstBI TTCGAA 1 cut(s) 1390
BstC8I GCNNGC 3 cut(s) 86, 835, 1326
BstDEI CTNAG 3 cut(s) 455, 559, 1272
BstEII GGTNACC 1 cut(s) 1306
BstENI CCTNNNNNAGG 1 cut(s) 702
BstF5I GGATG 4 cut(s) 192, 636, 889, 1381
BstFNI CGCG 2 cut(s) 725, 833
BstKTI GATC 8 cut(s) 259, 366, 432, 529, 751, 933, 1008, 1162
BstMAI GTCTC 2 cut(s) 119, 331
BstMBI GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
BstMCI CGRYCG 1 cut(s) 1131
BstMWI GCNNNNNNNGC 4 cut(s) 414, 728, 731, 1106
BstNI CCWGG 3 cut(s) 96, 642, 1179
BstPI GGTNACC 1 cut(s) 1306
BstSCI CCNGG 7 cut(s) 94, 252, 640, 1125, 1177, 1357, 1371
BstSFI CTRYAG 3 cut(s) 702, 736, 894
BstUI CGCG 2 cut(s) 725, 833
BstV1I GCAGC 3 cut(s) 381, 461, 743
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 2 cut(s) 1104, 1185
BstYI RGATCY 1 cut(s) 256
BstZI CGGCCG 1 cut(s) 1128
BsuRI GGCC 4 cut(s) 202, 408, 1130, 1169
BtsCI GGATG 4 cut(s) 192, 636, 889, 1381
BtsI GCAGTG 2 cut(s) 903, 1335
BtsIMutI CAGTG 2 cut(s) 903, 1335
BtuMI TCGCGA 1 cut(s) 833
BveI ACCTGC 2 cut(s) 706, 1091
Cac8I GCNNGC 3 cut(s) 86, 835, 1326
Cfr13I GGNCC 2 cut(s) 200, 407
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 6 cut(s) 288, 370, 376, 821, 1133, 1315
CviAII CATG 6 cut(s) 359, 477, 923, 969, 1225, 1243
CviQI GTAC 6 cut(s) 288, 370, 376, 821, 1133, 1315
DdeI CTNAG 3 cut(s) 455, 559, 1272
DpnI GATC 8 cut(s) 258, 365, 431, 528, 750, 932, 1007, 1161
DpnII GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
DraI TTTAAA 1 cut(s) 1081
EaeI YGGCCR 1 cut(s) 1128
EagI CGGCCG 1 cut(s) 1128
Eam1104I CTCTTC 3 cut(s) 160, 438, 912
EarI CTCTTC 3 cut(s) 160, 438, 912
EclXI CGGCCG 1 cut(s) 1128
Eco52I CGGCCG 1 cut(s) 1128
Eco72I CACGTG 1 cut(s) 754
Eco91I GGTNACC 1 cut(s) 1306
EcoNI CCTNNNNNAGG 1 cut(s) 702
EcoO65I GGTNACC 1 cut(s) 1306
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 3 cut(s) 94, 640, 1177
EcoT22I ATGCAT 1 cut(s) 508
FaeI CATG 6 cut(s) 362, 480, 926, 972, 1228, 1246
FaqI GGGAC 1 cut(s) 1107
FatI CATG 6 cut(s) 358, 476, 922, 968, 1224, 1242
FbaI TGATCA 1 cut(s) 930
Fnu4HI GCNGC 4 cut(s) 395, 450, 723, 732
FokI GGATG 4 cut(s) 199, 623, 876, 1388
Fsp4HI GCNGC 4 cut(s) 395, 450, 723, 732
FspBI CTAG 1 cut(s) 854
GluI GCNGC 4 cut(s) 395, 450, 723, 732
GsuI CTGGAG 1 cut(s) 1419
HaeIII GGCC 4 cut(s) 202, 408, 1130, 1169
HapII CCGG 4 cut(s) 254, 1127, 1358, 1373
Hin1II CATG 6 cut(s) 362, 480, 926, 972, 1228, 1246
HincII GTYRAC 2 cut(s) 789, 1200
HindII GTYRAC 2 cut(s) 789, 1200
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 3 cut(s) 67, 557, 1248
HpaI GTTAAC 2 cut(s) 789, 1200
HpaII CCGG 4 cut(s) 254, 1127, 1358, 1373
HphI GGTGA 1 cut(s) 1318
Hpy166II GTNNAC 8 cut(s) 55, 634, 665, 695, 789, 1135, 1200, 1364
Hpy188I TCNGA 8 cut(s) 160, 458, 519, 562, 574, 886, 1005, 1352
Hpy188III TCNNGA 7 cut(s) 178, 211, 382, 769, 806, 832, 1436
Hpy8I GTNNAC 8 cut(s) 55, 634, 665, 695, 789, 1135, 1200, 1364
HpyAV CCTTC 4 cut(s) 181, 328, 634, 1180
HpyCH4III ACNGT 3 cut(s) 135, 1021, 1077
HpyCH4IV ACGT 3 cut(s) 345, 368, 753
HpyF10VI GCNNNNNNNGC 4 cut(s) 414, 728, 731, 1106
HpyF3I CTNAG 3 cut(s) 455, 559, 1272
HpySE526I ACGT 3 cut(s) 345, 368, 753
Hsp92II CATG 6 cut(s) 362, 480, 926, 972, 1228, 1246
Ksp22I TGATCA 1 cut(s) 930
KspAI GTTAAC 2 cut(s) 789, 1200
Kzo9I GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 3 cut(s) 381, 461, 743
LweI GCATC 6 cut(s) 406, 493, 515, 946, 1220, 1429
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 1 cut(s) 854
MaeII ACGT 3 cut(s) 345, 368, 753
MaeIII GTNAC 3 cut(s) 350, 1306, 1415
MalI GATC 8 cut(s) 258, 365, 431, 528, 750, 932, 1007, 1161
MboI GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 572
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 301, 1237
Mph1103I ATGCAT 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 6 cut(s) 420, 788, 812, 1080, 1139, 1199
MspI CCGG 4 cut(s) 254, 1127, 1358, 1373
MspR9I CCNGG 7 cut(s) 96, 254, 642, 1127, 1179, 1359, 1373
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 3 cut(s) 96, 642, 1179
MvnI CGCG 2 cut(s) 725, 833
MwoI GCNNNNNNNGC 4 cut(s) 414, 728, 731, 1106
NciI CCSGG 4 cut(s) 254, 1127, 1359, 1373
NdeII GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
NlaIII CATG 6 cut(s) 362, 480, 926, 972, 1228, 1246
NmuCI GTSAC 1 cut(s) 1306
NruI TCGCGA 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 508
NspV TTCGAA 1 cut(s) 1390
PciSI GCTCTTC 1 cut(s) 912
PctI GAATGC 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 67, 1248
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 1371
PkrI GCNGC 4 cut(s) 396, 451, 724, 733
PleI GAGTC 1 cut(s) 551
PmaCI CACGTG 1 cut(s) 754
PmlI CACGTG 1 cut(s) 754
PpsI GAGTC 1 cut(s) 551
Ppu21I YACGTR 2 cut(s) 369, 754
PsiI TTATAA 1 cut(s) 35
Psp6I CCWGG 3 cut(s) 94, 640, 1177
PspCI CACGTG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 1306
PspGI CCWGG 3 cut(s) 94, 640, 1177
PspPI GGNCC 2 cut(s) 200, 407
PstI CTGCAG 1 cut(s) 898
PsuI RGATCY 1 cut(s) 256
RruI TCGCGA 1 cut(s) 833
RsaI GTAC 6 cut(s) 289, 371, 377, 822, 1134, 1316
RsaNI GTAC 6 cut(s) 288, 370, 376, 821, 1133, 1315
SapI GCTCTTC 1 cut(s) 912
SaqAI TTAA 6 cut(s) 420, 788, 812, 1080, 1139, 1199
SatI GCNGC 4 cut(s) 395, 450, 723, 732
Sau3AI GATC 8 cut(s) 256, 363, 429, 526, 748, 930, 1005, 1159
Sau96I GGNCC 2 cut(s) 200, 407
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 7 cut(s) 96, 254, 642, 1127, 1179, 1359, 1373
SduI GDGCHC 1 cut(s) 572
SexAI ACCWGGT 1 cut(s) 94
SfaNI GCATC 6 cut(s) 406, 493, 515, 946, 1220, 1429
SfcI CTRYAG 3 cut(s) 702, 736, 894
SfuI TTCGAA 1 cut(s) 1390
SmlI CTYRAG 2 cut(s) 380, 767
SmoI CTYRAG 2 cut(s) 380, 767
SsiI CCGC 3 cut(s) 723, 914, 1236
SspMI CTAG 1 cut(s) 854
StyD4I CCNGG 7 cut(s) 94, 252, 640, 1125, 1177, 1357, 1371
TaaI ACNGT 3 cut(s) 135, 1021, 1077
TaiI ACGT 3 cut(s) 348, 371, 756
TaqI TCGA 2 cut(s) 747, 1390
TatI WGTACW 2 cut(s) 820, 1314
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 2 cut(s) 67, 1248
Tru1I TTAA 6 cut(s) 420, 788, 812, 1080, 1139, 1199
Tru9I TTAA 6 cut(s) 420, 788, 812, 1080, 1139, 1199
TscAI CASTG 2 cut(s) 903, 1335
TseFI GTSAC 1 cut(s) 1306
TseI GCWGC 3 cut(s) 394, 449, 731
Tsp45I GTSAC 1 cut(s) 1306
TspDTI ATGAA 5 cut(s) 163, 287, 595, 696, 1213
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 2 cut(s) 903, 1335
Van91I CCANNNNNTGG 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 702
XapI RAATTY 4 cut(s) 494, 580, 798, 1219
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 1 cut(s) 854
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.