Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

15608369 .. 15610607

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTGGGCTTTGTGCTTTGGAGCATTGGTTCTTCCACCAGGTTCAATGGGATTGCCACTTATTGGGGAGACTTTACAGTTCTTCACTCCCAACACCTCTTCTGATATTCCTCCCTTCATCAAGAAAAGGATGGAAAGGTATGGGCCAATTTTCAGGACTAATTTGGTGGGAAGACCAGTAATAGTATCAACAGACCCGGATCTCAATTACTTCGTATTCCAACAAGAGGGTAATTTGTTTCATAGCTCATATCCTTATACCTTCACGGAGATTTTTGGGAGACAAAATGTGGGTAACTTGCATGGGATCACGTACAAGTACCTCAAGAACATAGTGCTCCATCTCTTTGGCCCTGAAAGCCTTAAAAAGATGATCCCAGAAATTGAAGAGGCAGCACTCAGAAGATTACAACAATGGTCATGTGAGGACACAATAGAATTCAAAGATGCATCTGCAAGTCTGATATTTGATCTTACCGCAAAGAAACTTATCAGTTATGACTCAGAAAACTGCTCGGAGAAGAATTTACGCAAAAACTTCGTTGCATTCATACAAGGATTGATTTCCTTCCCTGTGGACATCCCTGGAACAGCTTATCACAAATGTTACGGAACTCAGAAAAGAGAGGAAACGATGTTAACTGAAGAAATTTTTCTGGATTTAATGTTTGTACTGCTTTTCGCGAGCTTTGAAACAACTTCCCTAGCTCTAACATTAGCCATCAAGTTTCTTTCAGACCACCCTGCAGTGCTAAAGAAATTAACGGAAGAGCATGGGATGATCATAAAGCAAAGGGAAAATGCTGATGCTGGACTTACATGGAAAGAATACAAATCAATGACATTCACATTTCAGATCATCAACGAAACAGTTAGACTGGCAAATATAGTTCCAGCTATCTTTCGCAAAGCAATAAGAGAGATACAGTTTAAAGGACATACCATTCCAGCAGGTTGGGCAGTAATGGTTGGAATGCTAACAAGTAGTGCATCAAAAAATTTCATGGCTTTTGGCGGTGGCATGAGATTCTGTGTTGGAACAGACTTTGCTAAGGCGCAGATGGCTGTATTTCTGCATTGCTTGGTGACCAAGTACAGGTGGCAAGCAGTGGGGGGAGGAAATATAGTCCGAACTCCGGGTTTACAATTCCCGGATGGTTTTCACATTCGAATACAGGAGAAAGAAGATACAAGTAACAGGAAACAGCAAACTCCAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

407

Amino Acids

46.1

Weight (kDa)

8.59

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	12 - 162	2.5e-07	Cytochrome P450
p450	PF00067	207 - 325	1.7e-21	Cytochrome P450
p450	PF00067	330 - 373	1e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	941
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccII	CGCG	1 cut(s)	683
AciI	CCGC	2 cut(s)	477, 1014
AclWI	GGATC	3 cut(s)	207, 314, 367
AcsI	RAATTY	4 cut(s)	437, 523, 648, 997
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	4 cut(s)	314, 320, 672, 1094
AfiI	CCNNNNNNNGG	4 cut(s)	62, 226, 1095, 1135
AgsI	TTSAA	4 cut(s)	45, 386, 442, 692
AjnI	CCWGG	2 cut(s)	37, 583
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	5 cut(s)	246, 593, 687, 707, 896
AluI	AGCT	5 cut(s)	246, 593, 687, 707, 896
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	2 cut(s)	62, 274
AlwI	GGATC	3 cut(s)	207, 314, 367
AoxI	GGCC	2 cut(s)	143, 349
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	4 cut(s)	437, 523, 648, 997
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	1057
AspS9I	GGNCC	2 cut(s)	143, 350
AsuC2I	CCSGG	3 cut(s)	197, 1137, 1151
AsuHPI	GGTGA	1 cut(s)	1096
AsuII	TTCGAA	1 cut(s)	1168
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	5 cut(s)	124, 348, 728, 1054, 1148
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	2 cut(s)	39, 585
BclI	TGATCA	1 cut(s)	780
BcnI	CCSGG	3 cut(s)	197, 1137, 1151
BcoDI	GTCTC	2 cut(s)	62, 274
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	744
BfuAI	ACCTGC	1 cut(s)	941
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	5 cut(s)	39, 197, 585, 1137, 1151
BmgT120I	GGNCC	2 cut(s)	143, 350
BmrFI	CCNGG	5 cut(s)	39, 197, 585, 1137, 1151
BmsI	GCATC	5 cut(s)	436, 458, 796, 998, 1207
BpiI	GAAGAC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	1197
Bpu10I	CCTNAGC	1 cut(s)	1050
Bpu14I	TTCGAA	1 cut(s)	1168
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	3 cut(s)	197, 1137, 1151
BsaAI	YACGTR	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 226, 1095, 1135
Bse1I	ACTGG	2 cut(s)	176, 882
Bse3DI	GCAATG	1 cut(s)	1075
BseBI	CCWGG	2 cut(s)	39, 585
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	4 cut(s)	135, 579, 783, 1159
BseLI	CCNNNNNNNGG	4 cut(s)	62, 226, 1095, 1135
BseMI	GCAATG	1 cut(s)	1075
BseMII	CTCAG	3 cut(s)	412, 516, 629
BseNI	ACTGG	2 cut(s)	176, 882
BseXI	GCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	2 cut(s)	145, 351
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	197, 1136, 1151
BslI	CCNNNNNNNGG	4 cut(s)	62, 226, 1095, 1135
BsmAI	GTCTC	2 cut(s)	62, 274
BsmI	GAATGC	2 cut(s)	545, 978
BsnI	GGCC	2 cut(s)	145, 351
Bsp119I	TTCGAA	1 cut(s)	1168
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
Bsp68I	TCGCGA	1 cut(s)	683
BspACI	CCGC	2 cut(s)	477, 1014
BspANI	GGCC	2 cut(s)	145, 351
BspCNI	CTCAG	3 cut(s)	411, 515, 628
BspFNI	CGCG	1 cut(s)	683
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	941
BspPI	GGATC	3 cut(s)	207, 314, 367
BspQI	GCTCTTC	1 cut(s)	762
BspT104I	TTCGAA	1 cut(s)	1168
BsrDI	GCAATG	1 cut(s)	1075
BsrI	ACTGG	2 cut(s)	176, 882
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
Bst2UI	CCWGG	2 cut(s)	39, 585
Bst4CI	ACNGT	3 cut(s)	78, 871, 927
Bst6I	CTCTTC	3 cut(s)	103, 381, 762
BstBAI	YACGTR	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	1168
BstC8I	GCNNGC	2 cut(s)	685, 1104
BstDEI	CTNAG	4 cut(s)	398, 502, 615, 1050
BstEII	GGTNACC	1 cut(s)	1084
BstF5I	GGATG	4 cut(s)	135, 579, 783, 1159
BstFNI	CGCG	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	1057
BstKTI	GATC	6 cut(s)	202, 309, 375, 472, 783, 858
BstMAI	GTCTC	2 cut(s)	62, 274
BstMBI	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 956, 1061
BstNI	CCWGG	2 cut(s)	39, 585
BstPI	GGTNACC	1 cut(s)	1084
BstSCI	CCNGG	5 cut(s)	37, 195, 583, 1135, 1149
BstSFI	CTRYAG	1 cut(s)	744
BstUI	CGCG	1 cut(s)	683
BstV1I	GCAGC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	2 cut(s)	347, 954
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	145, 351
BtsCI	GGATG	4 cut(s)	135, 579, 783, 1159
BtsI	GCAGTG	2 cut(s)	753, 1113
BtsIMutI	CAGTG	2 cut(s)	753, 1113
BtuMI	TCGCGA	1 cut(s)	683
BveI	ACCTGC	1 cut(s)	941
Cac8I	GCNNGC	2 cut(s)	685, 1104
CfoI	GCGC	1 cut(s)	1057
Cfr13I	GGNCC	2 cut(s)	143, 350
CsiI	ACCWGGT	1 cut(s)	37
Csp6I	GTAC	4 cut(s)	313, 319, 671, 1093
CviAII	CATG	6 cut(s)	302, 420, 773, 819, 1003, 1021
CviQI	GTAC	4 cut(s)	313, 319, 671, 1093
DdeI	CTNAG	4 cut(s)	398, 502, 615, 1050
DpnI	GATC	6 cut(s)	201, 308, 374, 471, 782, 857
DpnII	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
DraI	TTTAAA	1 cut(s)	931
Eam1104I	CTCTTC	3 cut(s)	103, 381, 762
EarI	CTCTTC	3 cut(s)	103, 381, 762
Eco57I	CTGAAG	1 cut(s)	663
Eco91I	GGTNACC	1 cut(s)	1084
EcoO65I	GGTNACC	1 cut(s)	1084
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	37, 583
EcoT22I	ATGCAT	1 cut(s)	451
FaeI	CATG	6 cut(s)	305, 423, 776, 822, 1006, 1024
FatI	CATG	6 cut(s)	301, 419, 772, 818, 1002, 1020
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	4 cut(s)	142, 566, 790, 1166
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	1 cut(s)	1056
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	1197
HaeIII	GGCC	2 cut(s)	145, 351
HapII	CCGG	3 cut(s)	197, 1136, 1151
HhaI	GCGC	1 cut(s)	1057
Hin1II	CATG	6 cut(s)	305, 423, 776, 822, 1006, 1024
Hin6I	GCGC	1 cut(s)	1055
HinP1I	GCGC	1 cut(s)	1055
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	2 cut(s)	500, 1026
HpaI	GTTAAC	1 cut(s)	639
HpaII	CCGG	3 cut(s)	197, 1136, 1151
HphI	GGTGA	1 cut(s)	1096
Hpy166II	GTNNAC	3 cut(s)	577, 639, 1142
Hpy188I	TCNGA	9 cut(s)	103, 401, 462, 505, 517, 618, 736, 855, 1130
Hpy188III	TCNNGA	6 cut(s)	121, 154, 325, 656, 682, 1214
Hpy8I	GTNNAC	3 cut(s)	577, 639, 1142
HpyAV	CCTTC	3 cut(s)	124, 271, 577
HpyCH4III	ACNGT	3 cut(s)	78, 871, 927
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	7 cut(s)	301, 449, 455, 545, 746, 989, 1075
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 956, 1061
HpyF3I	CTNAG	4 cut(s)	398, 502, 615, 1050
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	6 cut(s)	305, 423, 776, 822, 1006, 1024
HspAI	GCGC	1 cut(s)	1055
Ksp22I	TGATCA	1 cut(s)	780
KspAI	GTTAAC	1 cut(s)	639
Kzo9I	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	2 cut(s)	20, 342
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	5 cut(s)	436, 458, 796, 998, 1207
MabI	ACCWGGT	1 cut(s)	37
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	4 cut(s)	293, 605, 1084, 1193
MalI	GATC	6 cut(s)	201, 308, 374, 471, 782, 857
MboI	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	3 cut(s)	244, 949, 1015
MnlI	CCTC	8 cut(s)	106, 120, 220, 332, 382, 418, 619, 1109
Mph1103I	ATGCAT	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	5 cut(s)	363, 638, 662, 761, 930
MspI	CCGG	3 cut(s)	197, 1136, 1151
MspR9I	CCNGG	5 cut(s)	39, 197, 585, 1137, 1151
Mva1269I	GAATGC	2 cut(s)	545, 978
MvaI	CCWGG	2 cut(s)	39, 585
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	3 cut(s)	357, 956, 1061
NciI	CCSGG	3 cut(s)	197, 1137, 1151
NdeII	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
NlaIII	CATG	6 cut(s)	305, 423, 776, 822, 1006, 1024
NmuCI	GTSAC	1 cut(s)	1084
NruI	TCGCGA	1 cut(s)	683
NsiI	ATGCAT	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	1168
PciSI	GCTCTTC	1 cut(s)	762
PctI	GAATGC	2 cut(s)	545, 978
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	1026
PflMI	CCANNNNNTGG	1 cut(s)	62
PfoI	TCCNGGA	1 cut(s)	1149
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	37, 583
PspEI	GGTNACC	1 cut(s)	1084
PspGI	CCWGG	2 cut(s)	37, 583
PspPI	GGNCC	2 cut(s)	143, 350
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	683
RsaI	GTAC	4 cut(s)	314, 320, 672, 1094
RsaNI	GTAC	4 cut(s)	313, 319, 671, 1093
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	5 cut(s)	363, 638, 662, 761, 930
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	6 cut(s)	199, 306, 372, 469, 780, 855
Sau96I	GGNCC	2 cut(s)	143, 350
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	5 cut(s)	39, 197, 585, 1137, 1151
SduI	GDGCHC	1 cut(s)	339
SexAI	ACCWGGT	1 cut(s)	37
SfaNI	GCATC	5 cut(s)	436, 458, 796, 998, 1207
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	1168
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SsiI	CCGC	2 cut(s)	477, 1014
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	5 cut(s)	37, 195, 583, 1135, 1149
TaaI	ACNGT	3 cut(s)	78, 871, 927
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	1168
TatI	WGTACW	2 cut(s)	670, 1092
TfiI	GAWTC	1 cut(s)	1026
Tru1I	TTAA	5 cut(s)	363, 638, 662, 761, 930
Tru9I	TTAA	5 cut(s)	363, 638, 662, 761, 930
TscAI	CASTG	2 cut(s)	753, 1113
TseFI	GTSAC	1 cut(s)	1084
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	1084
TspDTI	ATGAA	4 cut(s)	106, 230, 538, 991
TspGWI	ACGGA	3 cut(s)	281, 624, 779
TspRI	CASTG	2 cut(s)	753, 1113
Van91I	CCANNNNNTGG	1 cut(s)	62
XapI	RAATTY	4 cut(s)	437, 523, 648, 997
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.