Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Forward (+)

967632 .. 970369

Gene Structure 2738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGTTGGCTTTATGCATTGTAGCATTGGTTGTTTTAAGCATTACTCATTGGGTTTATAGGTGGAAGAATCCCAAATGCAATGGCAAACTTCCACCAGGTTCAATGGGATTGCCACTTATTGGGGAGACTTTACAGTTTTTCACTCCCAACACCTCTTCTGATATTCCTCCCTTCATCAAGAAAAGGATGGAAAGGTATGGTCCAATTTTCAGGACTAATTTGGTGGGAAGACCAGTAATAGTATCAACAGACCCGGATCTCAATTACTTTGTTTTCCAACAAGAGGGTAATCTGTTTCATAGCTCATATCCTTATTCCTTCACAGAGATCTTTGGGAGAAAAAATGTGGGTAACTTGCATGGGATTATGTACAAGTACCTCAAAAACATAATGCTGCATCTCTTTGGCCCTGAAAGCCTTAAAAAGATGATCACAGAAATTGAGCAGGCAGCACTCAGAAGATTACAACAATGGTCATCTGAGGACACAATAGAGTTCAAAGATGCTTCTGCAAGTCTGATATTTGATCTTGCTGCAAAGAAACTAATCAGTTATGACTCAGAAAAGTGTTCGGAGAAGAATCTACGGAATAACTTCAGTGCATTCATACAAGGATTGATTTCCTTTCCTGTGGACATCCCTGGAACAGCTTATTATAAATGTGTACAGGGTAGGAAAAATGCAATGAGAATGTTGGTAAACCTGCTACAAGAAAGACGAGAAAATCCGCGAAAGCAGCCTATAGATTTTTTTGATCATGTGCTTGAAGAATTCAAGAAAGAGGGAACAATCCTAACAGAACCAATTTTTCTGGATTTAATGTTTGTGCTACTTTTCGCAAGCTTTGAAACAACTTCCCTAGCTTTAACATTGGCCATCAAGTTTCTTTCAGACCATCCTGCGGTGCTAAAGAAATTAACGGAAGAACATGAGATGATCTTGAAGCAAAGGGAAAATGCTGATTCTGGACTTACATGGAAAGAATACAAATCAATGACATTCACATTTCAGATCATCAACGAAACTGTTAGACTAGCAAATATAGTTCCAGGTGTCTTCCGCAAAGCAAAAAGAGAGATACAGTTCAAAGGACACACCATTCCAGCAGGTTGGGTAGTAATGGTTTGTCCCCCGGCCGTTCACTTAAACCCTCAAAAATATGCTGATCCTGTTGCCTTCAGTCCAGAAAGATGGGAGGGAATGGAAACAAGTAGTGTATCAAAAAATTTCATGGCTTTTGGTGGCGGCATGAGATTCTGCGTTGGAACAGACTTTGCTAAGGTGCAGATGGCTGTTTTTTTGCATTGCTTGGTGACCAAGTACAGGTGGCAAGCAGTGAGGGGTGGCAATATAGTCCGAACTCCAGGTTTACAATTCCCAGATGGTTTCCACATTCGAGTACAGGAGAAAGAAGATGCAAGTAACAAGAAACAGCAAACAACTCCAGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

485

Amino Acids

55.37

Weight (kDa)

9.2

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 452	7.5e-65	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
Acc36I	ACCTGC	2 cut(s)	711, 1097
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccII	CGCG	1 cut(s)	730
AciI	CCGC	4 cut(s)	728, 902, 1060, 1245
AclWI	GGATC	2 cut(s)	264, 1160
AcoI	YGGCCR	2 cut(s)	873, 1134
AcsI	RAATTY	2 cut(s)	770, 1225
AcuI	CTGAAG	2 cut(s)	580, 1162
AfaI	GTAC	5 cut(s)	371, 377, 666, 1322, 1401
AfiI	CCNNNNNNNGG	4 cut(s)	119, 283, 901, 1323
AgsI	TTSAA	7 cut(s)	102, 499, 767, 775, 848, 943, 1087
AjnI	CCWGG	4 cut(s)	94, 640, 1048, 1363
AluBI	AGCT	4 cut(s)	303, 650, 843, 863
AluI	AGCT	4 cut(s)	303, 650, 843, 863
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	264, 1160
AoxI	GGCC	3 cut(s)	406, 873, 1134
ApeKI	GCWGC	4 cut(s)	394, 449, 533, 736
ApoI	RAATTY	2 cut(s)	770, 1225
Asp700I	GAANNNNTTC	1 cut(s)	593
AspS9I	GGNCC	2 cut(s)	200, 407
AsuC2I	CCSGG	2 cut(s)	254, 1133
AsuHPI	GGTGA	1 cut(s)	1324
AvaII	GGWCC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	875
BbsI	GAAGAC	2 cut(s)	235, 1048
BbvI	GCAGC	4 cut(s)	381, 461, 520, 748
BccI	CCATC	6 cut(s)	181, 884, 903, 1185, 1282, 1376
BceAI	ACGGC	1 cut(s)	1121
BciT130I	CCWGG	4 cut(s)	96, 642, 1050, 1365
BclI	TGATCA	2 cut(s)	429, 754
BcnI	CCSGG	2 cut(s)	254, 1133
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	860, 1034
BfmI	CTRYAG	1 cut(s)	741
BfuAI	ACCTGC	2 cut(s)	711, 1097
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	5 cut(s)	395, 450, 534, 737, 1246
BlsI	GCNGC	5 cut(s)	396, 451, 535, 738, 1247
Bme1390I	CCNGG	6 cut(s)	96, 254, 642, 1050, 1133, 1365
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 407
BmrFI	CCNGG	6 cut(s)	96, 254, 642, 1050, 1133, 1365
BmsI	GCATC	3 cut(s)	406, 493, 1405
BpiI	GAAGAC	2 cut(s)	235, 1048
BpmI	CTGGAG	2 cut(s)	1347, 1428
Bpu10I	CCTNAGC	1 cut(s)	1278
BpuMI	CCSGG	2 cut(s)	254, 1133
BsaJI	CCNNGG	2 cut(s)	640, 1131
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 283, 901, 1323
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	3 cut(s)	85, 690, 1303
BseBI	CCWGG	4 cut(s)	96, 642, 1050, 1365
BseDI	CCNNGG	2 cut(s)	640, 1131
BseGI	GGATG	3 cut(s)	192, 636, 895
BseLI	CCNNNNNNNGG	4 cut(s)	119, 283, 901, 1323
BseMI	GCAATG	3 cut(s)	85, 690, 1303
BseMII	CTCAG	3 cut(s)	469, 471, 573
BseNI	ACTGG	1 cut(s)	233
BseX3I	CGGCCG	1 cut(s)	1134
BseXI	GCAGC	4 cut(s)	381, 461, 520, 748
BsgI	GTGCAG	1 cut(s)	1304
Bsh1236I	CGCG	1 cut(s)	730
Bsh1285I	CGRYCG	1 cut(s)	1137
BshFI	GGCC	3 cut(s)	408, 875, 1136
BsiEI	CGRYCG	1 cut(s)	1137
BsiSI	CCGG	2 cut(s)	254, 1133
BslFI	GGGAC	1 cut(s)	1113
BslI	CCNNNNNNNGG	4 cut(s)	119, 283, 901, 1323
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	1113
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	408, 875, 1136
Bsp1407I	TGTACA	2 cut(s)	369, 664
Bsp143I	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
BspACI	CCGC	4 cut(s)	728, 902, 1060, 1245
BspANI	GGCC	3 cut(s)	408, 875, 1136
BspCNI	CTCAG	3 cut(s)	468, 472, 572
BspFNI	CGCG	1 cut(s)	730
BspMI	ACCTGC	2 cut(s)	711, 1097
BspPI	GGATC	2 cut(s)	264, 1160
BsrDI	GCAATG	3 cut(s)	85, 690, 1303
BsrGI	TGTACA	2 cut(s)	369, 664
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	640, 1131
BssMI	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
Bst2UI	CCWGG	4 cut(s)	96, 642, 1050, 1365
Bst4CI	ACNGT	3 cut(s)	135, 1027, 1083
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	2 cut(s)	369, 664
BstC8I	GCNNGC	3 cut(s)	447, 841, 1332
BstDEI	CTNAG	4 cut(s)	455, 480, 559, 1278
BstEII	GGTNACC	1 cut(s)	1312
BstF5I	GGATG	3 cut(s)	192, 636, 895
BstFNI	CGCG	1 cut(s)	730
BstKTI	GATC	8 cut(s)	259, 330, 432, 529, 757, 939, 1014, 1168
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
BstMCI	CGRYCG	1 cut(s)	1137
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 736
BstNI	CCWGG	4 cut(s)	96, 642, 1050, 1365
BstPI	GGTNACC	1 cut(s)	1312
BstSCI	CCNGG	6 cut(s)	94, 252, 640, 1048, 1131, 1363
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	4 cut(s)	381, 461, 520, 748
BstV2I	GAAGAC	2 cut(s)	235, 1048
BstX2I	RGATCY	2 cut(s)	256, 327
BstXI	CCANNNNNNTGG	2 cut(s)	1110, 1191
BstYI	RGATCY	2 cut(s)	256, 327
BstZI	CGGCCG	1 cut(s)	1134
BsuRI	GGCC	3 cut(s)	408, 875, 1136
BtsCI	GGATG	3 cut(s)	192, 636, 895
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	2 cut(s)	604, 1341
BveI	ACCTGC	2 cut(s)	711, 1097
Cac8I	GCNNGC	3 cut(s)	447, 841, 1332
Cfr13I	GGNCC	2 cut(s)	200, 407
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	5 cut(s)	370, 376, 665, 1321, 1400
CviAII	CATG	6 cut(s)	359, 758, 929, 975, 1231, 1249
CviQI	GTAC	5 cut(s)	370, 376, 665, 1321, 1400
DdeI	CTNAG	4 cut(s)	455, 480, 559, 1278
DpnI	GATC	8 cut(s)	258, 329, 431, 528, 756, 938, 1013, 1167
DpnII	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
EaeI	YGGCCR	2 cut(s)	873, 1134
EagI	CGGCCG	1 cut(s)	1134
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	1134
Eco47I	GGWCC	1 cut(s)	200
Eco52I	CGGCCG	1 cut(s)	1134
Eco57I	CTGAAG	2 cut(s)	580, 1162
Eco91I	GGTNACC	1 cut(s)	1312
EcoO65I	GGTNACC	1 cut(s)	1312
EcoRI	GAATTC	1 cut(s)	770
EcoRII	CCWGG	4 cut(s)	94, 640, 1048, 1363
EcoT22I	ATGCAT	1 cut(s)	17
FaeI	CATG	6 cut(s)	362, 761, 932, 978, 1234, 1252
FaqI	GGGAC	1 cut(s)	1113
FatI	CATG	6 cut(s)	358, 757, 928, 974, 1230, 1248
FbaI	TGATCA	2 cut(s)	429, 754
Fnu4HI	GCNGC	5 cut(s)	395, 450, 534, 737, 1246
FokI	GGATG	3 cut(s)	199, 623, 882
Fsp4HI	GCNGC	5 cut(s)	395, 450, 534, 737, 1246
FspBI	CTAG	2 cut(s)	860, 1034
GluI	GCNGC	5 cut(s)	395, 450, 534, 737, 1246
GsuI	CTGGAG	2 cut(s)	1347, 1428
HaeIII	GGCC	3 cut(s)	408, 875, 1136
HapII	CCGG	2 cut(s)	254, 1133
Hin1II	CATG	6 cut(s)	362, 761, 932, 978, 1234, 1252
HindIII	AAGCTT	1 cut(s)	841
HinfI	GANTC	5 cut(s)	67, 557, 580, 962, 1254
HpaII	CCGG	2 cut(s)	254, 1133
HphI	GGTGA	1 cut(s)	1324
Hpy166II	GTNNAC	5 cut(s)	634, 665, 700, 1141, 1370
Hpy188I	TCNGA	9 cut(s)	160, 458, 481, 519, 562, 574, 892, 1011, 1358
Hpy188III	TCNNGA	8 cut(s)	178, 211, 775, 812, 940, 966, 1184, 1445
Hpy8I	GTNNAC	5 cut(s)	634, 665, 700, 1141, 1370
HpyAV	CCTTC	3 cut(s)	181, 328, 1186
HpyCH4III	ACNGT	3 cut(s)	135, 1027, 1083
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 736
HpyF3I	CTNAG	4 cut(s)	455, 480, 559, 1278
Hsp92II	CATG	6 cut(s)	362, 761, 932, 978, 1234, 1252
Ksp22I	TGATCA	2 cut(s)	429, 754
Kzo9I	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
Lsp1109I	GCAGC	4 cut(s)	381, 461, 520, 748
LweI	GCATC	3 cut(s)	406, 493, 1405
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	2 cut(s)	860, 1034
MaeIII	GTNAC	3 cut(s)	350, 1312, 1421
MalI	GATC	8 cut(s)	258, 329, 431, 528, 756, 938, 1013, 1167
MboI	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
MboII	GAAGA	9 cut(s)	76, 147, 240, 471, 589, 779, 935, 1048, 1424
MflI	RGATCY	2 cut(s)	256, 327
MlsI	TGGCCA	1 cut(s)	875
MluCI	AATT	9 cut(s)	204, 217, 262, 438, 770, 804, 914, 1225, 1373
MluNI	TGGCCA	1 cut(s)	875
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	301, 1243
MnlI	CCTC	9 cut(s)	163, 177, 277, 389, 475, 775, 1161, 1189, 1332
Mox20I	TGGCCA	1 cut(s)	875
Mph1103I	ATGCAT	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	875
MseI	TTAA	6 cut(s)	35, 420, 818, 866, 917, 1145
Msp20I	TGGCCA	1 cut(s)	875
MspI	CCGG	2 cut(s)	254, 1133
MspR9I	CCNGG	6 cut(s)	96, 254, 642, 1050, 1133, 1365
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	4 cut(s)	96, 642, 1050, 1365
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	2 cut(s)	414, 736
NciI	CCSGG	2 cut(s)	254, 1133
NdeII	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
NlaIII	CATG	6 cut(s)	362, 761, 932, 978, 1234, 1252
NmuCI	GTSAC	1 cut(s)	1312
NsiI	ATGCAT	1 cut(s)	17
PctI	GAATGC	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	4 cut(s)	67, 580, 962, 1254
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	396, 451, 535, 738, 1247
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PsiI	TTATAA	1 cut(s)	657
Psp6I	CCWGG	4 cut(s)	94, 640, 1048, 1363
PspEI	GGTNACC	1 cut(s)	1312
PspGI	CCWGG	4 cut(s)	94, 640, 1048, 1363
PspPI	GGNCC	2 cut(s)	200, 407
PsuI	RGATCY	2 cut(s)	256, 327
RsaI	GTAC	5 cut(s)	371, 377, 666, 1322, 1401
RsaNI	GTAC	5 cut(s)	370, 376, 665, 1321, 1400
SaqAI	TTAA	6 cut(s)	35, 420, 818, 866, 917, 1145
SatI	GCNGC	5 cut(s)	395, 450, 534, 737, 1246
Sau3AI	GATC	8 cut(s)	256, 327, 429, 526, 754, 936, 1011, 1165
Sau96I	GGNCC	2 cut(s)	200, 407
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	6 cut(s)	96, 254, 642, 1050, 1133, 1365
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	3 cut(s)	406, 493, 1405
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	9 cut(s)	204, 217, 262, 438, 770, 804, 914, 1225, 1373
SsiI	CCGC	4 cut(s)	728, 902, 1060, 1245
SspMI	CTAG	2 cut(s)	860, 1034
StyD4I	CCNGG	6 cut(s)	94, 252, 640, 1048, 1131, 1363
TaaI	ACNGT	3 cut(s)	135, 1027, 1083
TaqI	TCGA	1 cut(s)	1396
TasI	AATT	9 cut(s)	204, 217, 262, 438, 770, 804, 914, 1225, 1373
TatI	WGTACW	4 cut(s)	369, 664, 1320, 1399
TauI	GCSGC	1 cut(s)	1248
TfiI	GAWTC	4 cut(s)	67, 580, 962, 1254
Tru1I	TTAA	6 cut(s)	35, 420, 818, 866, 917, 1145
Tru9I	TTAA	6 cut(s)	35, 420, 818, 866, 917, 1145
TscAI	CASTG	2 cut(s)	604, 1341
TseFI	GTSAC	1 cut(s)	1312
TseI	GCWGC	4 cut(s)	394, 449, 533, 736
Tsp45I	GTSAC	1 cut(s)	1312
TspDTI	ATGAA	4 cut(s)	163, 287, 595, 1219
TspGWI	ACGGA	2 cut(s)	601, 935
TspRI	CASTG	2 cut(s)	604, 1341
Van91I	CCANNNNNTGG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	770, 1225
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	2 cut(s)	860, 1034
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.