Rh2CG355800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001401
Physical Location & Seq
Forward (+)
48204622 .. 48207660
3039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG355800.1

Sequence Viewer

Length: 735 bp
ATGTTTGTACTGCTTTTCGCGAGCTTTGAAACAACTTCCCTAGCTCTAACATTAGCCATCAAGTTTCTTTCAGACCATCCTGCAGTGCTAAAGAAATTAACGGAAGAGCATGGGATGATCATAAAGCAAAGGGAAAATGCTGATGCTGGTCTTACATGGAAAGAATACAAATCAATGACATTCACATTTCAGATCATCAACGAAACAGTTAGACTGGCAAATATAGTTCCAGCTATCTTTCGCAAAGCAATAAGAGAGATACAGTTTAAAGGACATACCATTCCAGCAGGTTGGGCAGTAATGGTTTGTCCCCCGGCCGTACACTTAAACCCTCAAAAATATGATGATCCTGTGGCCTTCAATCCAGGGAGATGGGAGGGAATGTTAACAAGTAGTGCATCAAAAAATTTCATGGCTTTTGGCGGTGGCATGAGATTCTGTGTTGGAACAGACTTTGCTAAGGTGCAGATGGCTGTATTTCTGCATTGCTTGGTGACGAAGTACAGGTGGCAAGCAGTGGGGGGAGGAAATATAGTCCGAACTCCGGGTTTGATGAATGAAAAGGAGTGTAGGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGACTCTGCCAGGACCTGTTAGGAGAGGCAACAATATCTTGACAAGATTTGAAGGTACTGGATGCAAAGCCTTTTTTGAAGGAGGCCCTTCAAGCCGAAGTTGGACTGCCAGTGGACAGGGTTAA

Protein Analysis

244

Amino Acids

26.93

Weight (kDa)

9.77

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 177 2e-45 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 423
AclWI GGATC 3 cut(s) 341, 589, 600
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 4 cut(s) 9, 321, 503, 667
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 5 cut(s) 29, 361, 662, 689, 702
AjnI CCWGG 2 cut(s) 364, 619
AluBI AGCT 3 cut(s) 24, 44, 233
AluI AGCT 3 cut(s) 24, 44, 233
AlwI GGATC 3 cut(s) 341, 589, 600
AlwNI CAGNNNCTG 1 cut(s) 626
AoxI GGCC 3 cut(s) 315, 354, 694
ApoI RAATTY 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 623, 695
AsuC2I CCSGG 2 cut(s) 314, 546
AsuHPI GGTGA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 623
BccI CCATC 4 cut(s) 65, 84, 366, 463
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 366, 621
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 2 cut(s) 314, 546
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 278
Bme1390I CCNGG 4 cut(s) 314, 366, 546, 621
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 2 cut(s) 623, 695
BmrFI CCNGG 4 cut(s) 314, 366, 546, 621
BmsI GCATC 3 cut(s) 133, 407, 662
Bpu10I CCTNAGC 1 cut(s) 459
BpuMI CCSGG 2 cut(s) 314, 546
BsaJI CCNNGG 2 cut(s) 312, 365
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 3 cut(s) 219, 673, 720
Bse3DI GCAATG 1 cut(s) 484
BseBI CCWGG 2 cut(s) 366, 621
BseDI CCNNGG 2 cut(s) 312, 365
BseGI GGATG 3 cut(s) 76, 120, 677
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 610
BseNI ACTGG 3 cut(s) 219, 673, 720
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 485
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 317, 356, 696
BsiEI CGRYCG 1 cut(s) 318
BsiSI CCGG 2 cut(s) 314, 545
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 544
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 3 cut(s) 317, 356, 696
Bsp143I GATC 5 cut(s) 117, 192, 346, 581, 592
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 1 cut(s) 423
BspANI GGCC 3 cut(s) 317, 356, 696
BspCNI CTCAG 1 cut(s) 609
BspFNI CGCG 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 3 cut(s) 341, 589, 600
BspQI GCTCTTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 3 cut(s) 219, 673, 720
BssECI CCNNGG 2 cut(s) 312, 365
BssMI GATC 5 cut(s) 117, 192, 346, 581, 592
Bst2UI CCWGG 2 cut(s) 366, 621
Bst4CI ACNGT 2 cut(s) 208, 264
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 22, 513
BstDEI CTNAG 2 cut(s) 459, 596
BstF5I GGATG 3 cut(s) 76, 120, 677
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 5 cut(s) 120, 195, 349, 584, 595
BstMBI GATC 5 cut(s) 117, 192, 346, 581, 592
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 293, 702
BstNI CCWGG 2 cut(s) 366, 621
BstSCI CCNGG 4 cut(s) 312, 364, 544, 619
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 581, 592
BstXI CCANNNNNNTGG 2 cut(s) 291, 372
BstYI RGATCY 2 cut(s) 581, 592
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 3 cut(s) 317, 356, 696
BtsCI GGATG 3 cut(s) 76, 120, 677
BtsI GCAGTG 2 cut(s) 90, 522
BtsIMutI CAGTG 3 cut(s) 90, 522, 727
BtuMI TCGCGA 1 cut(s) 20
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 22, 513
CaiI CAGNNNCTG 1 cut(s) 626
Cfr13I GGNCC 2 cut(s) 623, 695
Csp6I GTAC 4 cut(s) 8, 320, 502, 666
CviAII CATG 4 cut(s) 110, 156, 412, 430
CviQI GTAC 4 cut(s) 8, 320, 502, 666
DdeI CTNAG 2 cut(s) 459, 596
DpnI GATC 5 cut(s) 119, 194, 348, 583, 594
DpnII GATC 5 cut(s) 117, 192, 346, 581, 592
DraI TTTAAA 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 315
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 623
Eco52I CGGCCG 1 cut(s) 315
EcoO109I RGGNCCY 2 cut(s) 623, 695
EcoRII CCWGG 2 cut(s) 364, 619
FaeI CATG 4 cut(s) 113, 159, 415, 433
FaqI GGGAC 1 cut(s) 294
FatI CATG 4 cut(s) 109, 155, 411, 429
FbaI TGATCA 1 cut(s) 117
FokI GGATG 3 cut(s) 63, 127, 684
FspBI CTAG 1 cut(s) 41
HaeIII GGCC 3 cut(s) 317, 356, 696
HapII CCGG 2 cut(s) 314, 545
Hin1II CATG 4 cut(s) 113, 159, 415, 433
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 2 cut(s) 435, 613
HpaI GTTAAC 1 cut(s) 387
HpaII CCGG 2 cut(s) 314, 545
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 3 cut(s) 322, 387, 725
Hpy188I TCNGA 4 cut(s) 73, 192, 539, 599
Hpy188III TCNNGA 2 cut(s) 19, 649
Hpy8I GTNNAC 3 cut(s) 322, 387, 725
HpyAV CCTTC 4 cut(s) 367, 656, 683, 708
HpyCH4III ACNGT 2 cut(s) 208, 264
HpyCH4V TGCA 5 cut(s) 83, 398, 466, 484, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 702
HpyF3I CTNAG 2 cut(s) 459, 596
Hsp92II CATG 4 cut(s) 113, 159, 415, 433
Ksp22I TGATCA 1 cut(s) 117
KspAI GTTAAC 1 cut(s) 387
Kzo9I GATC 5 cut(s) 117, 192, 346, 581, 592
LguI GCTCTTC 1 cut(s) 99
LweI GCATC 3 cut(s) 133, 407, 662
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 493
MalI GATC 5 cut(s) 119, 194, 348, 583, 594
MboI GATC 5 cut(s) 117, 192, 346, 581, 592
MboII GAAGA 1 cut(s) 116
MflI RGATCY 2 cut(s) 581, 592
MluCI AATT 2 cut(s) 95, 406
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 2 cut(s) 424, 692
MnlI CCTC 5 cut(s) 342, 370, 518, 629, 686
MseI TTAA 5 cut(s) 98, 267, 326, 386, 733
MspI CCGG 2 cut(s) 314, 545
MspR9I CCNGG 4 cut(s) 314, 366, 546, 621
MvaI CCWGG 2 cut(s) 366, 621
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 293, 702
NciI CCSGG 2 cut(s) 314, 546
NdeII GATC 5 cut(s) 117, 192, 346, 581, 592
NlaIII CATG 4 cut(s) 113, 159, 415, 433
NmuCI GTSAC 1 cut(s) 493
NruI TCGCGA 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 435
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 623
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 364, 619
PspGI CCWGG 2 cut(s) 364, 619
PspPI GGNCC 2 cut(s) 623, 695
PspPPI RGGWCCY 1 cut(s) 623
PstI CTGCAG 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 2 cut(s) 581, 592
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 4 cut(s) 9, 321, 503, 667
RsaNI GTAC 4 cut(s) 8, 320, 502, 666
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 5 cut(s) 98, 267, 326, 386, 733
Sau3AI GATC 5 cut(s) 117, 192, 346, 581, 592
Sau96I GGNCC 2 cut(s) 623, 695
SchI GAGTC 1 cut(s) 607
ScrFI CCNGG 4 cut(s) 314, 366, 546, 621
SetI ASST 8 cut(s) 26, 46, 235, 292, 465, 509, 628, 667
SfaNI GCATC 3 cut(s) 133, 407, 662
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 623
Sse9I AATT 2 cut(s) 95, 406
SsiI CCGC 1 cut(s) 423
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 312, 364, 544, 619
TaaI ACNGT 2 cut(s) 208, 264
TasI AATT 2 cut(s) 95, 406
TatI WGTACW 2 cut(s) 7, 501
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 5 cut(s) 98, 267, 326, 386, 733
Tru9I TTAA 5 cut(s) 98, 267, 326, 386, 733
TscAI CASTG 3 cut(s) 90, 522, 727
TseFI GTSAC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 400, 569, 573
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 3 cut(s) 90, 522, 727
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 1 cut(s) 406
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.