Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

15515980 .. 15519754

Gene Structure 3775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTTGGGTTTGTGCATTGTAGCATTAGTTGCTGTAGGCATTACACACTGGGTGTATAGGTGGAGAAATCCCAGATGCAATGGCAAACTTCCACCTGGTTCAATGGGTTTGCCGCTGATAGGCGAGACCATACAGTACCTTGCTTCCAACTCCTCCTTTGATCTTCCCCCTTTCATCAAGACCAGAAGGGAAAGGTATGGGCCAATATTCAAGAGTCAACTGATGGGAGCACCATTTATAGTATCGACAGACCCGGAACTCAATATGTATGTCTTCCAACAAGACGATAAATTGTTCCAAAGCGGGTATCCAGATTCTGTCCAAAAGATTTTCGGCAAACAACAGATGGGAAACATGCATGTGTTGGTTTACAAATACCTCAAGAGGATGATGCTTACCCTCATTGGCCCCGAAAGCCTGAAAAGGACGCTGCCTGAAATTGAACAAGCAATGCACACGAGTATGCAACAATGGACATGTCAAGACACTACAGAAGTTAAAGGAGCAGCTGCAGACATGATATTCTCTCTCACTGCAAAGAAACTCATGAGTTATGATTCAAGTAACTCCTCAGACAACCTAAGGGCAAACTTCAATGCGTTCGCTGATGGACTGATCTCCTTCCCTTTGGCAATCCCTGGAACAGCTTTTCACAAATGTTTACAGGGTAGGGACAGGATATTGAGCAGGCTAAAAGAGATGCTACAGGAAAGACGAGCAACATCTCGAAAGCAACCTATTGATTTTTTTGATTACATCCTTGAAGAACTTGAGAAAGAAGGAACAGTCTTAACAGAGGAAATTTGTTTTGATTTGATGTTTGCGCTACTCTTTACAAGTTTTGATACAACTTCCACAGCAATGACTCTGCTCCTCAAGTTTGTTTCAAGCCATCCTCTGGTGCTAAAGCAATTAACGGAAGAACATGAGAGGATTATAAAGCAAAGGGAAAATGCTAATTCAGGACTTACATGGGAAGAATACAAATCAATGAAATTTACAATGCAGGTCATCAATGAAACGGTTAGACTGGCAAATCAAGTGCCAGGCATCTTTCGCAAGGCAATAAAAGAAGTACAGTTCAAGGGATATACAATCCCAGAAGGTTGGTCAGTTCTGGTTTGTTTCCAAGCCCAACACTTAAACCCAGAAAAATATGAAGATCCTCTGGCCTTCAACCCATGGAGATGGGAGGGTAAGGAGAGTGGTGCATCCAAAGATTTTATGGCTTTTGGTGGTGGCTTGAGATCCTGTGTAGGAGCAGAATTTGGTAAGCTGCAGATGGCTGTATTTGTTCATTGCTTAGTCACAAAATACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

440

Amino Acids

50.22

Weight (kDa)

8.62

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 440	2.2e-57	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	938
Acc36I	ACCTGC	1 cut(s)	997
AccB7I	CCANNNNNTGG	1 cut(s)	898
AciI	CCGC	2 cut(s)	113, 303
AclWI	GGATC	2 cut(s)	1157, 1242
AcsI	RAATTY	3 cut(s)	801, 995, 1265
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	2 cut(s)	137, 1077
AfiI	CCNNNNNNNGG	2 cut(s)	119, 898
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	9 cut(s)	102, 211, 443, 561, 595, 764, 888, 1084, 1177
AjnI	CCWGG	3 cut(s)	94, 637, 1045
AluBI	AGCT	3 cut(s)	509, 647, 1276
AluI	AGCT	3 cut(s)	509, 647, 1276
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	1157, 1242
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	200, 406, 1170
ApeKI	GCWGC	4 cut(s)	430, 506, 509, 1276
ApoI	RAATTY	3 cut(s)	801, 995, 1265
AspLEI	GCGC	1 cut(s)	826
AspS9I	GGNCC	2 cut(s)	200, 407
AsuC2I	CCSGG	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	581
BauI	CACGAG	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	417, 496, 518, 1263
BccI	CCATC	6 cut(s)	217, 340, 602, 900, 1182, 1276
BciT130I	CCWGG	3 cut(s)	96, 639, 1047
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	5 cut(s)	33, 489, 510, 704, 1277
BfuAI	ACCTGC	1 cut(s)	997
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	5 cut(s)	113, 431, 507, 510, 1277
BlsI	GCNGC	5 cut(s)	114, 432, 508, 511, 1278
Bme1390I	CCNGG	4 cut(s)	96, 254, 639, 1047
BmgT120I	GGNCC	2 cut(s)	200, 407
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	4 cut(s)	96, 254, 639, 1047
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	5 cut(s)	65, 381, 690, 1059, 1220
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	265
BpuEI	CTTGAG	4 cut(s)	365, 791, 860, 1264
BpuMI	CCSGG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	637, 1181
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 898
Bse1I	ACTGG	2 cut(s)	53, 1035
Bse21I	CCTNAGG	1 cut(s)	581
Bse3DI	GCAATG	4 cut(s)	85, 456, 867, 1297
BseBI	CCWGG	3 cut(s)	96, 639, 1047
BseDI	CCNNGG	2 cut(s)	637, 1181
BseGI	GGATG	4 cut(s)	393, 756, 892, 1211
BseLI	CCNNNNNNNGG	2 cut(s)	119, 898
BseMI	GCAATG	4 cut(s)	85, 456, 867, 1297
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	53, 1035
BseRI	GAGGAG	3 cut(s)	142, 559, 863
BseXI	GCAGC	4 cut(s)	417, 496, 518, 1263
BshFI	GGCC	3 cut(s)	202, 408, 1172
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	119, 898
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	3 cut(s)	202, 408, 1172
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	160, 615, 1162, 1247
Bsp19I	CCATGG	1 cut(s)	1181
BspACI	CCGC	2 cut(s)	113, 303
BspANI	GGCC	3 cut(s)	202, 408, 1172
BspCNI	CTCAG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	2 cut(s)	514, 1281
BspMI	ACCTGC	1 cut(s)	997
BspPI	GGATC	2 cut(s)	1157, 1242
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	4 cut(s)	85, 456, 867, 1297
BsrI	ACTGG	2 cut(s)	53, 1035
BssECI	CCNNGG	2 cut(s)	637, 1181
BssMI	GATC	4 cut(s)	160, 615, 1162, 1247
BssSI	CACGAG	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	1181
Bst2BI	CACGAG	1 cut(s)	457
Bst2UI	CCWGG	3 cut(s)	96, 639, 1047
Bst4CI	ACNGT	4 cut(s)	135, 787, 1024, 1080
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	689
BstDEI	CTNAG	3 cut(s)	571, 581, 1303
BstDSI	CCRYGG	1 cut(s)	1181
BstF5I	GGATG	4 cut(s)	393, 756, 892, 1211
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	4 cut(s)	163, 618, 1165, 1250
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	4 cut(s)	160, 615, 1162, 1247
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 414, 1056
BstNI	CCWGG	3 cut(s)	96, 639, 1047
BstNSI	RCATGY	3 cut(s)	358, 362, 480
BstSCI	CCNGG	4 cut(s)	94, 252, 637, 1045
BstSFI	CTRYAG	5 cut(s)	33, 489, 510, 704, 1277
BstV1I	GCAGC	4 cut(s)	417, 496, 518, 1263
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	2 cut(s)	1162, 1247
BstXI	CCANNNNNNTGG	2 cut(s)	1107, 1188
BstYI	RGATCY	2 cut(s)	1162, 1247
Bsu36I	CCTNAGG	1 cut(s)	581
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	202, 408, 1172
BtgI	CCRYGG	1 cut(s)	1181
BtsCI	GGATG	4 cut(s)	393, 756, 892, 1211
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	46, 531
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	1 cut(s)	689
CaiI	CAGNNNCTG	1 cut(s)	317
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	1 cut(s)	826
Cfr13I	GGNCC	2 cut(s)	200, 407
CseI	GACGC	1 cut(s)	436
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	136, 1076
CviAII	CATG	8 cut(s)	355, 359, 477, 517, 547, 926, 972, 1182
CviQI	GTAC	2 cut(s)	136, 1076
DdeI	CTNAG	3 cut(s)	571, 581, 1303
DpnI	GATC	4 cut(s)	162, 617, 1164, 1249
DpnII	GATC	4 cut(s)	160, 615, 1162, 1247
DraIII	CACNNNGTG	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	1181
Eco31I	GGTCTC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	581
EcoRII	CCWGG	3 cut(s)	94, 637, 1045
EcoT14I	CCWWGG	1 cut(s)	1181
EcoT22I	ATGCAT	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	1181
FaeI	CATG	8 cut(s)	358, 362, 480, 520, 550, 929, 975, 1185
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	8 cut(s)	354, 358, 476, 516, 546, 925, 971, 1181
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	5 cut(s)	113, 431, 507, 510, 1277
FokI	GGATG	4 cut(s)	400, 743, 879, 1198
Fsp4HI	GCNGC	5 cut(s)	113, 431, 507, 510, 1277
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	5 cut(s)	113, 431, 507, 510, 1277
HaeIII	GGCC	3 cut(s)	202, 408, 1172
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	1 cut(s)	826
Hin1II	CATG	8 cut(s)	358, 362, 480, 520, 550, 929, 975, 1185
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HinfI	GANTC	4 cut(s)	214, 314, 557, 865
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	218, 370, 662
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	8 cut(s)	178, 211, 311, 382, 482, 547, 726, 963
Hpy8I	GTNNAC	3 cut(s)	218, 370, 662
HpyAV	CCTTC	5 cut(s)	180, 631, 773, 1097, 1183
HpyCH4III	ACNGT	4 cut(s)	135, 787, 1024, 1080
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 414, 1056
HpyF3I	CTNAG	3 cut(s)	571, 581, 1303
Hsp92II	CATG	8 cut(s)	358, 362, 480, 520, 550, 929, 975, 1185
HspAI	GCGC	1 cut(s)	824
Kzo9I	GATC	4 cut(s)	160, 615, 1162, 1247
LmnI	GCTCC	4 cut(s)	227, 503, 876, 1259
Lsp1109I	GCAGC	4 cut(s)	417, 496, 518, 1263
LweI	GCATC	5 cut(s)	65, 381, 690, 1059, 1220
MabI	ACCWGGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	563, 1306
MalI	GATC	4 cut(s)	162, 617, 1164, 1249
MboI	GATC	4 cut(s)	160, 615, 1162, 1247
MboII	GAAGA	6 cut(s)	155, 265, 776, 932, 989, 1172
MflI	RGATCY	2 cut(s)	1162, 1247
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	7 cut(s)	290, 438, 801, 911, 958, 995, 1265
MlyI	GAGTC	2 cut(s)	223, 859
MmeI	TCCRAC	2 cut(s)	171, 301
Mph1103I	ATGCAT	1 cut(s)	360
MseI	TTAA	4 cut(s)	498, 791, 914, 1142
MslI	CAYNNNNRTG	4 cut(s)	359, 461, 860, 1186
MspA1I	CMGCKG	2 cut(s)	115, 509
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	4 cut(s)	96, 254, 639, 1047
MvaI	CCWGG	3 cut(s)	96, 639, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	29, 414, 1056
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	1181
NdeII	GATC	4 cut(s)	160, 615, 1162, 1247
NlaIII	CATG	8 cut(s)	358, 362, 480, 520, 550, 929, 975, 1185
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	1306
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	3 cut(s)	358, 362, 480
PagI	TCATGA	1 cut(s)	546
PciI	ACATGT	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	314, 557
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	5 cut(s)	114, 432, 508, 511, 1278
PleI	GAGTC	2 cut(s)	222, 859
PpsI	GAGTC	2 cut(s)	222, 859
PscI	ACATGT	1 cut(s)	476
PsiI	TTATAA	1 cut(s)	938
Psp6I	CCWGG	3 cut(s)	94, 637, 1045
PspGI	CCWGG	3 cut(s)	94, 637, 1045
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	2 cut(s)	200, 407
PstI	CTGCAG	2 cut(s)	514, 1281
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	1162, 1247
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	137, 1077
RsaNI	GTAC	2 cut(s)	136, 1076
RseI	CAYNNNNRTG	4 cut(s)	359, 461, 860, 1186
SaqAI	TTAA	4 cut(s)	498, 791, 914, 1142
SatI	GCNGC	5 cut(s)	113, 431, 507, 510, 1277
Sau3AI	GATC	4 cut(s)	160, 615, 1162, 1247
Sau96I	GGNCC	2 cut(s)	200, 407
SchI	GAGTC	2 cut(s)	223, 859
ScrFI	CCNGG	4 cut(s)	96, 254, 639, 1047
SduI	GDGCHC	1 cut(s)	232
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	5 cut(s)	65, 381, 690, 1059, 1220
SfcI	CTRYAG	5 cut(s)	33, 489, 510, 704, 1277
SmiMI	CAYNNNNRTG	4 cut(s)	359, 461, 860, 1186
SmlI	CTYRAG	4 cut(s)	380, 770, 875, 1243
SmoI	CTYRAG	4 cut(s)	380, 770, 875, 1243
Sse9I	AATT	7 cut(s)	290, 438, 801, 911, 958, 995, 1265
SsiI	CCGC	2 cut(s)	113, 303
SspI	AATATT	1 cut(s)	207
StyD4I	CCNGG	4 cut(s)	94, 252, 637, 1045
StyI	CCWWGG	1 cut(s)	1181
TaaI	ACNGT	4 cut(s)	135, 787, 1024, 1080
TaqI	TCGA	2 cut(s)	245, 727
TasI	AATT	7 cut(s)	290, 438, 801, 911, 958, 995, 1265
TatI	WGTACW	1 cut(s)	1075
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	314, 557
Tru1I	TTAA	4 cut(s)	498, 791, 914, 1142
Tru9I	TTAA	4 cut(s)	498, 791, 914, 1142
TscAI	CASTG	2 cut(s)	53, 538
TseFI	GTSAC	1 cut(s)	1306
TseI	GCWGC	4 cut(s)	430, 506, 509, 1276
Tsp45I	GTSAC	1 cut(s)	1306
TspDTI	ATGAA	5 cut(s)	163, 1007, 1032, 1173, 1286
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	2 cut(s)	53, 538
Van91I	CCANNNNNTGG	1 cut(s)	898
XapI	RAATTY	3 cut(s)	801, 995, 1265
XceI	RCATGY	3 cut(s)	358, 362, 480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1222
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.