Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

16431482 .. 16433788

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG178700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGAGCACCATTTATAGTATCGACAGACCCGGAACTCAATATGTATGTCTTCCAACAAGACGATAAATTGTTTCAAAGCGGGTATCCAGATTCTGTCCAAAAGATTTTCGGCAAACAACAGATGGGAAACATGCATGTGTTGGTTTACAAATACCTCAAGAGGATGATGCTTACCCTCATCGGCCCCGAAAGCCTTAAAAGGACGCTCCCTGAAATTGAACAAGCAATACACACAAGTATGCAACAATGGACATGTCAAGACACTACAGAAGTTAAAGAAGCAGCTGCAGACATGATATTCTCTCTCACTGCAAAGAAACTCATGAGTTATGATTCAAGTAACTCCTCAGACAACCTAAGGGCAAACTTCAATGCGTTCGCTGATGGACTGATCTCCTTCCCTTTGGCAATCCCTGGAACAGCTTTTCACAAATGTTTACAGGGTAGGGACAGGATATTGAGCAGGTTAAAAGAGATGCTACAGGAAAGACGAGCAACATCTCGAAAGCAACCTATTGATTTTTTTGATTACATCCTTGAAGAACTTGAGAAAGAAGGAACAGTCTTAACAGAGGAAATTTGTTTTGATTTGATGTTTGCGCTACTCTTTACAAGTTTTGATACAACTTCCACAGCAATGACTCTGCTCCTCAAGTTTGTTTCAAGCCATCCTCTGGTGCTAAAGCAATTAACGGAAGAACATGAGAGGATTATAAAGCAAAGGGAAAATGCTAATTCAGGACTTACATGGGAAGAATACAAATCAATGAAATTTACAATGCAGGTCATCAATGAAACGGTTAGACTGGCAAATCAAGTGCCAGGCATCTTTCGCAAGGCAATAAAAGAAGTACAGTTCAAGGGATATACAATCCCAGAAGGTTGGTCAGTTCTGGTTTGTTTCCAAGCCCAACACTTAAACCCAGAAAAATATGAAGATCCTCTGGCCTTCAACCCATGGAGATGGGAGGGTAAGGAGAGTGGTGCATCCAAAGATTTTATGGCTTTTGGTGGTGGCTTGAGATCCTGTGTAGGAGCAGAATTTGGTAAGCTGCAGATGGCTGTATTTGTCCATTGCTTAGTCACAAAATACAGGTGGGAAATGATTGGAGGAAATATAGTCCGAAATCCTGGTATACAATTTCCAGGTGGTTTTCACATCCGGATACACCAGAAAGATACAAGGAGCGGCAAACAGCATATAACTCCAGACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

406

Amino Acids

46.47

Weight (kDa)

7.14

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	51 - 373	2.1e-53	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	716
Acc36I	ACCTGC	2 cut(s)	456, 775
AccB7I	CCANNNNNTGG	1 cut(s)	676
AccBSI	CCGCTC	1 cut(s)	1191
AccI	GTMKAC	1 cut(s)	1138
AccIII	TCCGGA	1 cut(s)	1164
AciI	CCGC	2 cut(s)	81, 1191
AclWI	GGATC	2 cut(s)	935, 1020
AcsI	RAATTY	3 cut(s)	579, 773, 1043
AfaI	GTAC	1 cut(s)	855
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	1 cut(s)	254
AgsI	TTSAA	8 cut(s)	77, 221, 339, 373, 542, 666, 862, 955
AjnI	CCWGG	4 cut(s)	415, 823, 1132, 1147
AluBI	AGCT	3 cut(s)	287, 425, 1054
AluI	AGCT	3 cut(s)	287, 425, 1054
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	935, 1020
AlwNI	CAGNNNCTG	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	1164
AoxI	GGCC	2 cut(s)	184, 948
ApeKI	GCWGC	3 cut(s)	284, 287, 1054
ApoI	RAATTY	3 cut(s)	579, 773, 1043
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	274, 296, 1041
BccI	CCATC	5 cut(s)	118, 380, 678, 960, 1054
BciT130I	CCWGG	4 cut(s)	417, 825, 1134, 1149
BciVI	GTATCC	2 cut(s)	96, 1161
BcnI	CCSGG	1 cut(s)	32
BfmI	CTRYAG	4 cut(s)	267, 288, 482, 1055
BfuAI	ACCTGC	2 cut(s)	456, 775
BfuI	GTATCC	2 cut(s)	96, 1161
BisI	GCNGC	4 cut(s)	285, 288, 1055, 1192
BlsI	GCNGC	4 cut(s)	286, 289, 1056, 1193
Bme1390I	CCNGG	5 cut(s)	32, 417, 825, 1134, 1149
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	5 cut(s)	32, 417, 825, 1134, 1149
BmsI	GCATC	4 cut(s)	159, 468, 837, 998
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	1194
BpuEI	CTTGAG	4 cut(s)	143, 569, 638, 1042
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	415, 959
BsaWI	WCCGGW	1 cut(s)	1164
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	813
Bse21I	CCTNAGG	1 cut(s)	359
Bse3DI	GCAATG	2 cut(s)	645, 1075
BseAI	TCCGGA	1 cut(s)	1164
BseBI	CCWGG	4 cut(s)	417, 825, 1134, 1149
BseDI	CCNNGG	2 cut(s)	415, 959
BseGI	GGATG	5 cut(s)	171, 534, 670, 989, 1161
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	2 cut(s)	645, 1075
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	2 cut(s)	337, 641
BseXI	GCAGC	3 cut(s)	274, 296, 1041
BshFI	GGCC	2 cut(s)	186, 950
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	32, 1165
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	186, 950
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	1164
Bsp143I	GATC	3 cut(s)	393, 940, 1025
Bsp19I	CCATGG	1 cut(s)	959
BspACI	CCGC	2 cut(s)	81, 1191
BspANI	GGCC	2 cut(s)	186, 950
BspCNI	CTCAG	1 cut(s)	362
BspEI	TCCGGA	1 cut(s)	1164
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	2 cut(s)	292, 1059
BspMI	ACCTGC	2 cut(s)	456, 775
BspPI	GGATC	2 cut(s)	935, 1020
BsrBI	CCGCTC	1 cut(s)	1191
BsrDI	GCAATG	2 cut(s)	645, 1075
BsrI	ACTGG	1 cut(s)	813
BssECI	CCNNGG	2 cut(s)	415, 959
BssMI	GATC	3 cut(s)	393, 940, 1025
BssNAI	GTATAC	1 cut(s)	1139
BssT1I	CCWWGG	1 cut(s)	959
Bst1107I	GTATAC	1 cut(s)	1139
Bst2UI	CCWGG	4 cut(s)	417, 825, 1134, 1149
Bst4CI	ACNGT	3 cut(s)	565, 802, 858
BstDEI	CTNAG	3 cut(s)	349, 359, 1081
BstDSI	CCRYGG	1 cut(s)	959
BstF5I	GGATG	5 cut(s)	171, 534, 670, 989, 1161
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	3 cut(s)	396, 943, 1028
BstMBI	GATC	3 cut(s)	393, 940, 1025
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 834
BstNI	CCWGG	4 cut(s)	417, 825, 1134, 1149
BstNSI	RCATGY	3 cut(s)	136, 140, 258
BstSCI	CCNGG	5 cut(s)	30, 415, 823, 1132, 1147
BstSFI	CTRYAG	4 cut(s)	267, 288, 482, 1055
BstV1I	GCAGC	3 cut(s)	274, 296, 1041
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	940, 1025
BstXI	CCANNNNNNTGG	2 cut(s)	885, 966
BstYI	RGATCY	2 cut(s)	940, 1025
BstZ17I	GTATAC	1 cut(s)	1139
Bsu36I	CCTNAGG	1 cut(s)	359
BsuI	GTATCC	2 cut(s)	96, 1161
BsuRI	GGCC	2 cut(s)	186, 950
BtgI	CCRYGG	1 cut(s)	959
BtsCI	GGATG	5 cut(s)	171, 534, 670, 989, 1161
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	2 cut(s)	456, 775
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	854
CviAII	CATG	8 cut(s)	133, 137, 255, 295, 325, 704, 750, 960
CviQI	GTAC	1 cut(s)	854
DdeI	CTNAG	3 cut(s)	349, 359, 1081
DpnI	GATC	3 cut(s)	395, 942, 1027
DpnII	GATC	3 cut(s)	393, 940, 1025
Eco130I	CCWWGG	1 cut(s)	959
Eco81I	CCTNAGG	1 cut(s)	359
EcoRII	CCWGG	4 cut(s)	415, 823, 1132, 1147
EcoT14I	CCWWGG	1 cut(s)	959
EcoT22I	ATGCAT	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	959
FaeI	CATG	8 cut(s)	136, 140, 258, 298, 328, 707, 753, 963
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	8 cut(s)	132, 136, 254, 294, 324, 703, 749, 959
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	1138
Fnu4HI	GCNGC	4 cut(s)	285, 288, 1055, 1192
FokI	GGATG	5 cut(s)	178, 521, 657, 976, 1148
Fsp4HI	GCNGC	4 cut(s)	285, 288, 1055, 1192
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	4 cut(s)	285, 288, 1055, 1192
GsuI	CTGGAG	1 cut(s)	1194
HaeIII	GGCC	2 cut(s)	186, 950
HapII	CCGG	2 cut(s)	32, 1165
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	8 cut(s)	136, 140, 258, 298, 328, 707, 753, 963
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	3 cut(s)	92, 335, 643
HpaII	CCGG	2 cut(s)	32, 1165
Hpy166II	GTNNAC	3 cut(s)	148, 440, 1139
Hpy188I	TCNGA	2 cut(s)	352, 1127
Hpy188III	TCNNGA	8 cut(s)	89, 160, 260, 325, 504, 741, 1165, 1211
Hpy8I	GTNNAC	3 cut(s)	148, 440, 1139
HpyAV	CCTTC	4 cut(s)	409, 551, 875, 961
HpyCH4III	ACNGT	3 cut(s)	565, 802, 858
HpyCH4V	TGCA	7 cut(s)	136, 244, 290, 314, 784, 989, 1057
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 834
HpyF3I	CTNAG	3 cut(s)	349, 359, 1081
Hsp92II	CATG	8 cut(s)	136, 140, 258, 298, 328, 707, 753, 963
HspAI	GCGC	1 cut(s)	602
Kpn2I	TCCGGA	1 cut(s)	1164
Kzo9I	GATC	3 cut(s)	393, 940, 1025
LmnI	GCTCC	5 cut(s)	5, 213, 654, 1037, 1188
Lsp1109I	GCAGC	3 cut(s)	274, 296, 1041
LweI	GCATC	4 cut(s)	159, 468, 837, 998
MaeIII	GTNAC	2 cut(s)	341, 1084
MalI	GATC	3 cut(s)	395, 942, 1027
MbiI	CCGCTC	1 cut(s)	1191
MboI	GATC	3 cut(s)	393, 940, 1025
MboII	GAAGA	5 cut(s)	43, 554, 710, 767, 950
MflI	RGATCY	2 cut(s)	940, 1025
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	8 cut(s)	68, 216, 579, 689, 736, 773, 1043, 1142
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	79
Mph1103I	ATGCAT	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	1164
MseI	TTAA	7 cut(s)	198, 276, 470, 569, 692, 920, 1219
MslI	CAYNNNNRTG	4 cut(s)	137, 239, 638, 964
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	2 cut(s)	32, 1165
MspR9I	CCNGG	5 cut(s)	32, 417, 825, 1134, 1149
MvaI	CCWGG	4 cut(s)	417, 825, 1134, 1149
MwoI	GCNNNNNNNGC	2 cut(s)	192, 834
NciI	CCSGG	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	959
NdeII	GATC	3 cut(s)	393, 940, 1025
NlaIII	CATG	8 cut(s)	136, 140, 258, 298, 328, 707, 753, 963
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	1084
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	3 cut(s)	136, 140, 258
PagI	TCATGA	1 cut(s)	324
PciI	ACATGT	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	92, 335
PflMI	CCANNNNNTGG	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	286, 289, 1056, 1193
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PscI	ACATGT	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	716
Psp6I	CCWGG	4 cut(s)	415, 823, 1132, 1147
PspGI	CCWGG	4 cut(s)	415, 823, 1132, 1147
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	185
PsrI	GAACNNNNNNTAC	2 cut(s)	213, 245
PstI	CTGCAG	2 cut(s)	292, 1059
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	940, 1025
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	855
RsaNI	GTAC	1 cut(s)	854
RseI	CAYNNNNRTG	4 cut(s)	137, 239, 638, 964
SaqAI	TTAA	7 cut(s)	198, 276, 470, 569, 692, 920, 1219
SatI	GCNGC	4 cut(s)	285, 288, 1055, 1192
Sau3AI	GATC	3 cut(s)	393, 940, 1025
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	5 cut(s)	32, 417, 825, 1134, 1149
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	4 cut(s)	159, 468, 837, 998
SfcI	CTRYAG	4 cut(s)	267, 288, 482, 1055
SmiMI	CAYNNNNRTG	4 cut(s)	137, 239, 638, 964
SmlI	CTYRAG	4 cut(s)	158, 548, 653, 1021
SmoI	CTYRAG	4 cut(s)	158, 548, 653, 1021
Sse9I	AATT	8 cut(s)	68, 216, 579, 689, 736, 773, 1043, 1142
SsiI	CCGC	2 cut(s)	81, 1191
StyD4I	CCNGG	5 cut(s)	30, 415, 823, 1132, 1147
StyI	CCWWGG	1 cut(s)	959
TaaI	ACNGT	3 cut(s)	565, 802, 858
TaqI	TCGA	2 cut(s)	23, 505
TasI	AATT	8 cut(s)	68, 216, 579, 689, 736, 773, 1043, 1142
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	1 cut(s)	1194
TfiI	GAWTC	2 cut(s)	92, 335
Tru1I	TTAA	7 cut(s)	198, 276, 470, 569, 692, 920, 1219
Tru9I	TTAA	7 cut(s)	198, 276, 470, 569, 692, 920, 1219
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	1084
TseI	GCWGC	3 cut(s)	284, 287, 1054
Tsp45I	GTSAC	1 cut(s)	1084
TspDTI	ATGAA	3 cut(s)	785, 810, 951
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	676
XapI	RAATTY	3 cut(s)	579, 773, 1043
XceI	RCATGY	3 cut(s)	136, 140, 258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1000
XmiI	GTMKAC	1 cut(s)	1138
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.