Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

14163832 .. 14164621

Gene Structure 790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG179100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTACAGGAAAGACGAGCAACATCTCGAAAGCAACCTATTGATTTTTTTGATTACATCCTTGAAGAACTTGAGAAAGAAGGAACAGTCTTAACAGAGGAAATTTGTTTTGATTTGATGTTTGCGCTACTCTTTACAAGTTTTGAAACAACTTCCACAGCAATGACTCTGCTCCTCAAGTTTGTTTCGGGCCATCCTCTGGAAGAACATGAAAGGATTATAAAGCAAAGGGAAAATGCTAATTCAGGACTTACATGGGAAGAATACAAATCAATGAAATTTACATTGCAGGTCATCAATGAAACGGTTAGACTGGCAAATCAAGTGCCAGGCATCTTTCGCAAGGCAATAAAAGAAGTACAGTTCAAGGGATATACAATCCCAGAAGGTTGGTCAGTTCTGGTTTGTTTCCAAGCCCAACACTTAAACCCAGAAAAATATGAAGATCCTCTGGCCTTCAACCCATGGAGATGGGAGGTACATAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

163

Amino Acids

19.23

Weight (kDa)

5.46

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 162	7.2e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	199
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	102, 278
AfaI	GTAC	2 cut(s)	360, 480
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	65, 146, 367, 460
AjnI	CCWGG	1 cut(s)	328
AlwI	GGATC	1 cut(s)	440
AoxI	GGCC	2 cut(s)	190, 453
ApoI	RAATTY	2 cut(s)	102, 278
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	190
BccI	CCATC	2 cut(s)	201, 465
BciT130I	CCWGG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	92, 161
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	2 cut(s)	168, 284
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	2 cut(s)	57, 193
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	2 cut(s)	168, 284
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	192, 455
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	2 cut(s)	192, 455
Bsp143I	GATC	1 cut(s)	445
Bsp19I	CCATGG	1 cut(s)	464
BspANI	GGCC	2 cut(s)	192, 455
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	168, 284
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	88, 307, 363
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	57, 193
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	2 cut(s)	390, 471
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	192, 455
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	57, 193
BveI	ACCTGC	1 cut(s)	280
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	359, 479
CviAII	CATG	3 cut(s)	209, 255, 465
CviJI	RGCY	3 cut(s)	192, 416, 455
CviKI_1	RGCY	3 cut(s)	192, 416, 455
CviQI	GTAC	2 cut(s)	359, 479
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	3 cut(s)	212, 258, 468
FaiI	YATR	7 cut(s)	210, 221, 256, 375, 441, 466, 483
FatI	CATG	3 cut(s)	208, 254, 464
FokI	GGATG	2 cut(s)	44, 180
GlaI	GCGC	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	192, 455
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	212, 258, 468
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	27, 200, 246
HpyAV	CCTTC	3 cut(s)	74, 380, 466
HpyCH4III	ACNGT	3 cut(s)	88, 307, 363
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	212, 258, 468
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	177
LweI	GCATC	1 cut(s)	342
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	4 cut(s)	77, 215, 272, 455
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	3 cut(s)	102, 241, 278
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	91, 185, 207, 459, 469
MseI	TTAA	2 cut(s)	92, 425
MslI	CAYNNNNRTG	2 cut(s)	161, 469
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	212, 258, 468
PflMI	CCANNNNNTGG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	2 cut(s)	360, 480
RsaNI	GTAC	2 cut(s)	359, 479
RseI	CAYNNNNRTG	2 cut(s)	161, 469
SaqAI	TTAA	2 cut(s)	92, 425
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	4 cut(s)	40, 294, 391, 480
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	2 cut(s)	161, 469
SmlI	CTYRAG	2 cut(s)	71, 176
SmoI	CTYRAG	2 cut(s)	71, 176
Sse9I	AATT	3 cut(s)	102, 241, 278
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	88, 307, 363
TaqI	TCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	102, 241, 278
TatI	WGTACW	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	92, 425
Tru9I	TTAA	2 cut(s)	92, 425
TspDTI	ATGAA	4 cut(s)	225, 290, 315, 456
Van91I	CCANNNNNTGG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	102, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.