Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Forward (+)

51528725 .. 51530004

Gene Structure 1280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTGGGTTTGTGCATTGTAGCATTAGTTGCTGTAGTCATTACACACTGGGTGTATAGGTGGAGAAATCCCAGATGCAATGGTAAAGTTCCACCAGGTTCAATGGGTTTGCCACTGATAGGCGAGACCATACAGTTCCTCACTTCAAGCACCTCCTTTGATATTCCTCCCTTCATTAAAACAAGGATGGAAAGGTATGGACCAATATTCAAGAGCCAATTGATGGGAGCACCATTCATAGTATCGACAGATCCCGAACTGAATATGTATGTCTTCCAACAAGACGATAAATTGTTTGAAAGCGGGTATCCAGATTCTGTCAAAAAGATTTTTGGTGAAAAACAGTTGGGAAACATTCATGTGTCGGTTTACAAATACCTCAAGAGCATGATGCTTAACCTCATTGGCCCTGAAAGCCTCAAAAATATGCTCCCTGAAATCGAGCAATCGACTCGCACAAGATTAGAGCAATGGTCGTGTCAAGACACTACAGAGTTGAAAGAAGCAACTTCAGAAATGATATTTGCACTCACTGCAAAGATACTCATGAGTTATGATTCAAGTAAGTCCTCAGACAACTTAAGGGCAAGCTTCGATGCATTCGCTCGGGGAATGTTCTCCCTCCCATTGCCGATCCCCGGAACAGCTTTTCACAAATGTTTACAGGTACACATAAACCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

227

Amino Acids

25.7

Weight (kDa)

8.62

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 205	5e-06	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	2 cut(s)	245, 628
AcuI	CTGAAG	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	3 cut(s)	119, 223, 638
AflII	CTTAAG	1 cut(s)	580
AgsI	TTSAA	6 cut(s)	102, 147, 211, 299, 499, 561
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	591, 647
AluI	AGCT	2 cut(s)	591, 647
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	245, 628
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	200, 407
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	232
BccI	CCATC	2 cut(s)	181, 217
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	96
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	2 cut(s)	33, 489
BfrI	CTTAAG	1 cut(s)	580
BfuI	GTATCC	1 cut(s)	318
Bme1390I	CCNGG	2 cut(s)	96, 639
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	2 cut(s)	200, 407
BmrFI	CCNGG	2 cut(s)	96, 639
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	65, 381, 586
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 223, 638
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	3 cut(s)	85, 476, 626
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	3 cut(s)	119, 223, 638
BseMI	GCAATG	3 cut(s)	85, 476, 626
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	639
BslI	CCNNNNNNNGG	3 cut(s)	119, 223, 638
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	408
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	250, 633
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	546
BspPI	GGATC	2 cut(s)	245, 628
BspTI	CTTAAG	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	3 cut(s)	85, 476, 626
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	2 cut(s)	250, 633
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	3 cut(s)	135, 345, 680
BstAFI	CTTAAG	1 cut(s)	580
BstAPI	GCANNNNNTGC	2 cut(s)	29, 533
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	253, 636
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	250, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 414, 533
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	94, 637
BstSFI	CTRYAG	2 cut(s)	33, 489
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	46, 113, 531
Cac8I	GCNNGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	317
CciI	TCATGA	1 cut(s)	546
Cfr13I	GGNCC	2 cut(s)	200, 407
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	668
CviAII	CATG	3 cut(s)	359, 388, 547
CviJI	RGCY	5 cut(s)	216, 408, 417, 591, 647
CviKI_1	RGCY	5 cut(s)	216, 408, 417, 591, 647
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	2 cut(s)	252, 635
DpnII	GATC	2 cut(s)	250, 633
DraIII	CACNNNGTG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	601
FaeI	CATG	3 cut(s)	362, 391, 550
FatI	CATG	3 cut(s)	358, 387, 546
FauI	CCCGC	1 cut(s)	296
FokI	GGATG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	1 cut(s)	639
Hin1II	CATG	3 cut(s)	362, 391, 550
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	3 cut(s)	314, 451, 557
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	370, 662, 670
Hpy188I	TCNGA	2 cut(s)	514, 574
Hpy188III	TCNNGA	6 cut(s)	211, 254, 311, 382, 482, 547
Hpy8I	GTNNAC	3 cut(s)	370, 662, 670
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	3 cut(s)	135, 345, 680
HpyCH4V	TGCA	5 cut(s)	15, 78, 527, 536, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 414, 533
HpyF3I	CTNAG	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	362, 391, 550
Kzo9I	GATC	2 cut(s)	250, 633
LmnI	GCTCC	2 cut(s)	227, 435
LpnPI	CCDG	9 cut(s)	34, 81, 85, 108, 324, 423, 447, 650, 652
LweI	GCATC	3 cut(s)	65, 381, 586
MabI	ACCWGGT	1 cut(s)	94
MalI	GATC	2 cut(s)	252, 635
MboI	GATC	2 cut(s)	250, 633
MboII	GAAGA	1 cut(s)	265
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	2 cut(s)	218, 290
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	8 cut(s)	149, 163, 177, 389, 410, 428, 580, 632
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	3 cut(s)	177, 396, 581
MslI	CAYNNNNRTG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	580
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	2 cut(s)	96, 639
MunI	CAATTG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	29, 414, 533
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	2 cut(s)	250, 633
NlaIII	CATG	3 cut(s)	362, 391, 550
NsiI	ATGCAT	1 cut(s)	601
PagI	TCATGA	1 cut(s)	546
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	314, 557
PflMI	CCANNNNNTGG	1 cut(s)	223
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	200, 407
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	177, 396, 581
Sau3AI	GATC	2 cut(s)	250, 633
Sau96I	GGNCC	2 cut(s)	200, 407
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	96, 639
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	9 cut(s)	62, 100, 155, 197, 381, 402, 593, 649, 669
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	3 cut(s)	65, 381, 586
SfcI	CTRYAG	2 cut(s)	33, 489
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	380, 580
SmoI	CTYRAG	2 cut(s)	380, 580
Sse9I	AATT	2 cut(s)	218, 290
SsiI	CCGC	1 cut(s)	303
SspI	AATATT	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	94, 637
TaaI	ACNGT	3 cut(s)	135, 345, 680
TaqI	TCGA	4 cut(s)	245, 441, 449, 594
TasI	AATT	2 cut(s)	218, 290
TfiI	GAWTC	2 cut(s)	314, 557
Tru1I	TTAA	3 cut(s)	177, 396, 581
Tru9I	TTAA	3 cut(s)	177, 396, 581
TscAI	CASTG	3 cut(s)	53, 120, 538
TspDTI	ATGAA	3 cut(s)	163, 226, 347
TspRI	CASTG	3 cut(s)	53, 120, 538
Van91I	CCANNNNNTGG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.