Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Forward (+)

51546565 .. 51549832

Gene Structure 3268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCGGCGGTCTCGCCGCTTTTGGGCTCCTATCTGTGCCCAACTCTTGATGGTTTTGACGGCAAAGGCGAGGAATTACCGCCGACTATGTCAATGTTCAAATCATGGTGGTTGAATGGCCGTCGGCGACTCGATGGCGGGGAAAGCATGCTTTGGTGGGTCCTTGGGCTTCTTGGGCCGGTAGCGGCTGTGCTACGCAATCAAGTTTTGGGACGGGATCTCTTGGGTCCGAGAATGAGTATTGGGTCTTTGTATGGGCCAATATTCAAGAGTCAACTGATGGGAGCACCATTTATAGTATCGACAGACCCGGAACTCAATATGTATGTCTTCCAACAAGACGATAAATTGTTTCAAAGCGGGTATCCAGAATCTGTCCAAAAGATTTTCGGCAAACAACAGATGGGAAACATGCATGTGTTGGTTTACAAATACCTCAAGAGGATGATGCTTACCCTCATTGGCCCCGAAAGCCTTAAAAGGACGCTCCCTGAAATTGAACAAGCAATACACACAAGTATGCAACAATGGACATGTCAAGACACTACAGAAGTTAAAGGAGCAGCTGCAGACATGATATTCTCTCTCACTGCAAAGAAACTCATGAGTTATGATTCAAGTAACTCCTCAGACAACCTAAGGGCAAACTTCAATGCGTTCGCTGATGGACTGATCTCCTTCCCTTTGGCAATCCCTGGAACAGCTTTTCACAAATGTTTACAGGGTAGGGACAGGATATTGAGCAGGCTAAAAGAGATGCTACAGGAAAGACGAGCAACATCTCGAAAGCAACCTATTGATTTTTTTGATTACATCCTTGAAGAACTTGAGAAAGAAGGAACAGTCTTAACAGAGGAAATTTGTTTTGATTTGATGTTTGCACTACTCTTTACAAGTTTTGAAACAACTTCCACGGCAATGACTCTGCTCCTCAAGTTTGTTTCAGGCCATCCTCTGGTGCTAAAGCAATTAACGGTCATCAATGAAACGGTTAGACTGGCAAATCAAGTGCCAGGCATCTTTCGCAAGGCAATAAAAGAAGTACAGTTCAAGGTTGACATGTACAATATGAAGCGGGTATCATTTCAAGTTCCATGCACTATCTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

370

Amino Acids

41.75

Weight (kDa)

8.47

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	84 - 324	6.8e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	955
AciI	CCGC	8 cut(s)	5, 8, 17, 80, 138, 185, 360, 1075
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	858
AfaI	GTAC	2 cut(s)	1044, 1064
AfiI	CCNNNNNNNGG	2 cut(s)	23, 955
AflIII	ACRYGT	2 cut(s)	533, 1059
AjnI	CCWGG	2 cut(s)	694, 1012
AluBI	AGCT	2 cut(s)	566, 704
AluI	AGCT	2 cut(s)	566, 704
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	5 cut(s)	118, 176, 257, 463, 946
ApeKI	GCWGC	2 cut(s)	563, 566
ApoI	RAATTY	1 cut(s)	858
AspS9I	GGNCC	5 cut(s)	160, 176, 227, 257, 464
AsuC2I	CCSGG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	160, 227
AxyI	CCTNAGG	1 cut(s)	638
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	553, 575
BccI	CCATC	6 cut(s)	44, 128, 274, 397, 659, 957
BceAI	ACGGC	3 cut(s)	76, 105, 930
BciT130I	CCWGG	2 cut(s)	696, 1014
BciVI	GTATCC	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	16
BfmI	CTRYAG	3 cut(s)	546, 567, 761
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	5 cut(s)	6, 17, 186, 564, 567
BlsI	GCNGC	5 cut(s)	7, 18, 187, 565, 568
Bme1390I	CCNGG	3 cut(s)	311, 696, 1014
Bme18I	GGWCC	2 cut(s)	160, 227
BmgT120I	GGNCC	5 cut(s)	160, 176, 227, 257, 464
BmiI	GGNNCC	4 cut(s)	28, 161, 228, 466
BmrFI	CCNGG	3 cut(s)	311, 696, 1014
BmsI	GCATC	3 cut(s)	438, 747, 1026
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	3 cut(s)	422, 848, 917
BpuMI	CCSGG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	163, 694, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 955
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	1002
Bse21I	CCTNAGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	2 cut(s)	696, 1014
BseDI	CCNNGG	3 cut(s)	163, 694, 912
BseGI	GGATG	3 cut(s)	450, 813, 949
BseLI	CCNNNNNNNGG	2 cut(s)	23, 955
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	1002
BseRI	GAGGAG	2 cut(s)	616, 920
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	553, 575
BshFI	GGCC	5 cut(s)	120, 178, 259, 465, 948
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	179, 311
BslFI	GGGAC	2 cut(s)	225, 743
BslI	CCNNNNNNNGG	2 cut(s)	23, 955
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	225, 743
BsnI	GGCC	5 cut(s)	120, 178, 259, 465, 948
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	3 cut(s)	29, 41, 289
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	2 cut(s)	217, 672
BspACI	CCGC	8 cut(s)	5, 8, 17, 80, 138, 185, 360, 1075
BspANI	GGCC	5 cut(s)	120, 178, 259, 465, 948
BspCNI	CTCAG	1 cut(s)	641
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	4 cut(s)	28, 161, 228, 466
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	1 cut(s)	1002
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	163, 694, 912
BssMI	GATC	2 cut(s)	217, 672
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	696, 1014
Bst4CI	ACNGT	4 cut(s)	844, 976, 991, 1047
BstAUI	TGTACA	1 cut(s)	1062
BstC8I	GCNNGC	2 cut(s)	149, 746
BstDEI	CTNAG	2 cut(s)	628, 638
BstDSI	CCRYGG	1 cut(s)	912
BstF5I	GGATG	3 cut(s)	450, 813, 949
BstKTI	GATC	2 cut(s)	220, 675
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	217, 672
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 175, 471, 1023
BstNI	CCWGG	2 cut(s)	696, 1014
BstNSI	RCATGY	5 cut(s)	151, 415, 419, 537, 1063
BstSCI	CCNGG	3 cut(s)	309, 694, 1012
BstSFI	CTRYAG	3 cut(s)	546, 567, 761
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	553, 575
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	638
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	5 cut(s)	120, 178, 259, 465, 948
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	3 cut(s)	450, 813, 949
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	149, 746
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	5 cut(s)	160, 176, 227, 257, 464
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	1043, 1063
CviAII	CATG	9 cut(s)	105, 148, 412, 416, 534, 574, 604, 1060, 1095
CviQI	GTAC	2 cut(s)	1043, 1063
DdeI	CTNAG	2 cut(s)	628, 638
DpnI	GATC	2 cut(s)	219, 674
DpnII	GATC	2 cut(s)	217, 672
EaeI	YGGCCR	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	160, 227
Eco81I	CCTNAGG	1 cut(s)	638
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	694, 1012
EcoT14I	CCWWGG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	9 cut(s)	108, 151, 415, 419, 537, 577, 607, 1063, 1098
FaqI	GGGAC	2 cut(s)	225, 743
FatI	CATG	9 cut(s)	104, 147, 411, 415, 533, 573, 603, 1059, 1094
FauI	CCCGC	3 cut(s)	131, 353, 1068
Fnu4HI	GCNGC	5 cut(s)	6, 17, 186, 564, 567
FokI	GGATG	3 cut(s)	457, 800, 936
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	5 cut(s)	6, 17, 186, 564, 567
GluI	GCNGC	5 cut(s)	6, 17, 186, 564, 567
HaeIII	GGCC	5 cut(s)	120, 178, 259, 465, 948
HapII	CCGG	2 cut(s)	179, 311
HgaI	GACGC	1 cut(s)	493
Hin1II	CATG	9 cut(s)	108, 151, 415, 419, 537, 577, 607, 1063, 1098
HincII	GTYRAC	2 cut(s)	275, 1057
HindII	GTYRAC	2 cut(s)	275, 1057
HinfI	GANTC	5 cut(s)	129, 271, 371, 614, 922
HpaII	CCGG	2 cut(s)	179, 311
Hpy166II	GTNNAC	4 cut(s)	275, 427, 719, 1057
Hpy188I	TCNGA	2 cut(s)	231, 631
Hpy188III	TCNNGA	7 cut(s)	47, 268, 368, 439, 539, 604, 783
Hpy8I	GTNNAC	4 cut(s)	275, 427, 719, 1057
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	688, 830
HpyCH4III	ACNGT	4 cut(s)	844, 976, 991, 1047
HpyCH4V	TGCA	7 cut(s)	415, 523, 569, 593, 881, 1098, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 175, 471, 1023
HpyF3I	CTNAG	2 cut(s)	628, 638
Hsp92II	CATG	9 cut(s)	108, 151, 415, 419, 537, 577, 607, 1063, 1098
Kzo9I	GATC	2 cut(s)	217, 672
LmnI	GCTCC	5 cut(s)	32, 284, 492, 560, 933
Lsp1109I	GCAGC	2 cut(s)	553, 575
LweI	GCATC	3 cut(s)	438, 747, 1026
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	2 cut(s)	219, 674
MboI	GATC	2 cut(s)	217, 672
MboII	GAAGA	2 cut(s)	322, 833
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	29, 41, 289
MluCI	AATT	5 cut(s)	74, 347, 495, 858, 968
MlyI	GAGTC	3 cut(s)	123, 280, 916
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	8 cut(s)	64, 435, 446, 467, 637, 847, 941, 963
Mph1103I	ATGCAT	1 cut(s)	417
MseI	TTAA	4 cut(s)	477, 555, 848, 971
MslI	CAYNNNNRTG	3 cut(s)	416, 518, 917
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	2 cut(s)	179, 311
MspR9I	CCNGG	3 cut(s)	311, 696, 1014
MvaI	CCWGG	2 cut(s)	696, 1014
MwoI	GCNNNNNNNGC	4 cut(s)	144, 175, 471, 1023
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	217, 672
NlaIII	CATG	9 cut(s)	108, 151, 415, 419, 537, 577, 607, 1063, 1098
NlaIV	GGNNCC	4 cut(s)	28, 161, 228, 466
NsiI	ATGCAT	1 cut(s)	417
NspI	RCATGY	5 cut(s)	151, 415, 419, 537, 1063
PaeI	GCATGC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	603
PciI	ACATGT	2 cut(s)	533, 1059
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	371, 614
PflFI	GACNNNGTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	955
PkrI	GCNGC	5 cut(s)	7, 18, 187, 565, 568
PleI	GAGTC	3 cut(s)	123, 279, 916
PpsI	GAGTC	3 cut(s)	123, 279, 916
PpuMI	RGGWCCY	1 cut(s)	160
PscI	ACATGT	2 cut(s)	533, 1059
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	694, 1012
PspGI	CCWGG	2 cut(s)	694, 1012
PspN4I	GGNNCC	4 cut(s)	28, 161, 228, 466
PspPI	GGNCC	5 cut(s)	160, 176, 227, 257, 464
PspPPI	RGGWCCY	1 cut(s)	160
PsrI	GAACNNNNNNTAC	2 cut(s)	492, 524
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	217
PsyI	GACNNNGTC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	1044, 1064
RsaNI	GTAC	2 cut(s)	1043, 1063
RseI	CAYNNNNRTG	3 cut(s)	416, 518, 917
SaqAI	TTAA	4 cut(s)	477, 555, 848, 971
SatI	GCNGC	5 cut(s)	6, 17, 186, 564, 567
Sau3AI	GATC	2 cut(s)	217, 672
Sau96I	GGNCC	5 cut(s)	160, 176, 227, 257, 464
SchI	GAGTC	3 cut(s)	123, 280, 916
ScrFI	CCNGG	3 cut(s)	311, 696, 1014
SduI	GDGCHC	3 cut(s)	29, 41, 289
SetI	ASST	6 cut(s)	438, 568, 639, 706, 796, 1056
SfaNI	GCATC	3 cut(s)	438, 747, 1026
SfcI	CTRYAG	3 cut(s)	546, 567, 761
SinI	GGWCC	2 cut(s)	160, 227
SmiMI	CAYNNNNRTG	3 cut(s)	416, 518, 917
SmlI	CTYRAG	3 cut(s)	437, 827, 932
SmoI	CTYRAG	3 cut(s)	437, 827, 932
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	5 cut(s)	74, 347, 495, 858, 968
SsiI	CCGC	8 cut(s)	5, 8, 17, 80, 138, 185, 360, 1075
SspI	AATATT	1 cut(s)	264
StyD4I	CCNGG	3 cut(s)	309, 694, 1012
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	4 cut(s)	844, 976, 991, 1047
TaqI	TCGA	3 cut(s)	132, 302, 784
TasI	AATT	5 cut(s)	74, 347, 495, 858, 968
TatI	WGTACW	2 cut(s)	1042, 1062
TauI	GCSGC	3 cut(s)	8, 19, 188
TfiI	GAWTC	2 cut(s)	371, 614
Tru1I	TTAA	4 cut(s)	477, 555, 848, 971
Tru9I	TTAA	4 cut(s)	477, 555, 848, 971
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	2 cut(s)	563, 566
TspDTI	ATGAA	2 cut(s)	999, 1085
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	955
VpaK11BI	GGWCC	2 cut(s)	160, 227
XapI	RAATTY	1 cut(s)	858
XceI	RCATGY	5 cut(s)	151, 415, 419, 537, 1063
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.