Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001401

Physical Location & Seq

Genomic Coordinates Reverse (-)

15452177 .. 15454576

Gene Structure 2400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG176000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTGGGCTTTGTGCTTTGGAGCATTGGTTGTTATAAGCATTACTCATTGGGTTTACAGGTGGAGGAATCCCAAATGCAATGGCAAGCTTCCACCAGGTTCAATGGGATTGCCACTTATTGGGGAGACTTTACAGTTCTTCACTCCCAACACCTCTTCTGATATTCCTCCCTTCATCAAGAAAAGGATGGAAAGGTATGGGCCAATTTTCAGGACTAATTTGGTGGGAAGACCAGTAATAGTATCAACAGACCCGGATCTCAATTACTTTGTATTCCAACAAGAGGGTAATTTGTTTCATAGCTCATATCCTTATACCTTCACGGAGATTTTTGGGAGACAAAATGTCGGTAACTTGCATGGGATCACGTACAAGTACCTCAAGAACATAGTGCTCCATCTCTTTGGCCCTGAAAGCCTTAAAAAGATGATCCCAGAAATTGAAGAGGCAGCACTCAGAAGATTACAACAATGGTCATGTGAGGACACAATAGAATTCAAAGATGCATCTGCAAGTCTGATATTTGATCTTACCGCAAAGAAACTTATCAGTTATGACTCAGAAAACTGCTCGGAGAAGAATTTACGCAAAAACTTCGTTGCATTCATACAAGGATTGATTTCCTTCCCTGTGGACATCCCTGGAACAGCTTATCACAAATGTTTACAGGGTAGGAAAAATGCAATGAGAATGTTGGTAAACCTGCTACAGGAAAGACGAGAAAAGCCGCGAAAGCAGCCTATAGATTTTTTCGATCACGTGCTTGAAGAACTCAAGAAAGAGGAAACGATGTTAACTGAAGAAATTTTTCTGGATTTAATGTTTGTACTGCTTTTCGCTAGCTTTGAAACAACTTCCCTAGCTCTAACATTAGCCATCAAGTTTCTTTCAGACCATCCTGCAGTGCTAAAGAAATTAACGGAAGAGCATGGGATGATCATAAAGCAAAGGGAAAATGCTGATGCTGGACTTACATGGAAAGAATACAAATCAATGACATTCACATTTCAGATCATCAACGAAACAGTTAGACTGGCAAATATAGTTCCAGCTATCTTTCGCAAAGCAATAAGAGAGATACAGTTTAAAGGACATACCATTCCAGCAGGTTGGGCAGTAATGGTTTGTCCCCCGGCCGTACACTTAAACCCTCAAAAATATGATGATCCTGTGGCCTTCAATCCAGGGAGATGGGAGGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

401

Amino Acids

46.17

Weight (kDa)

8.72

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 399	2e-47	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12740 AT1G12740 AT1G12740 AT1G12740
fragaria_vesca	FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01580 FvH4_5g01581 FvH4_5g01600 FvH4_5g01640 FvH4_5g01640 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641 FvH4_5g01641
malus_domestica	MD04G1066300.v1.1 MD04G1066400.v1.1
prunus_persica	Prupe.5G092000_v2.0.a1 Prupe.5G092300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199081 RchiOBHm_Chr7g0199091 RchiOBHm_Chr7g0199101
rosa_laevigata	RLG00000003815 RLG00000003817 RLG00000008398
rosa_multiflora	Rmu_sc0006266.1_g000039 Rmu_sc0006266.1_g000047
rosa_roxburghii	Rroxscaffold_3G00257080 Rroxscaffold_3G00257120 Rroxscaffold_3G00257130 Rroxscaffold_3G00257140
rosa_rugosa	Rorug07G0052500 Rorug07G0052600
rosa_samantha	Rh2CG355800 Rh4BG380800 Rh4CG395400 Rh7AG175900 Rh7AG176000 Rh7BG179100 Rh7BG179200 Rh7BG179500 Rh7CG185000 Rh7CG185100 Rh7DG178700 Rh7DG178800 Rh7DG179000
rosa_wichuraiana	Rw7G015430 Rw7G015440 Rw7G015450 Rw7G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
Acc36I	ACCTGC	2 cut(s)	711, 1097
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccII	CGCG	1 cut(s)	730
AciI	CCGC	2 cut(s)	534, 728
AclWI	GGATC	4 cut(s)	264, 371, 424, 1160
AcoI	YGGCCR	1 cut(s)	1134
AcsI	RAATTY	3 cut(s)	494, 580, 804
AcuI	CTGAAG	1 cut(s)	819
AcvI	CACGTG	1 cut(s)	760
AfaI	GTAC	4 cut(s)	371, 377, 828, 1140
AfiI	CCNNNNNNNGG	3 cut(s)	119, 283, 709
AgsI	TTSAA	6 cut(s)	102, 443, 499, 767, 848, 1180
AhdI	GACNNNNNGTC	1 cut(s)	344
AjnI	CCWGG	3 cut(s)	94, 640, 1183
AluBI	AGCT	6 cut(s)	88, 303, 650, 843, 863, 1052
AluI	AGCT	6 cut(s)	88, 303, 650, 843, 863, 1052
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	119, 331
AlwI	GGATC	4 cut(s)	264, 371, 424, 1160
AoxI	GGCC	4 cut(s)	200, 406, 1134, 1173
ApeKI	GCWGC	2 cut(s)	449, 736
ApoI	RAATTY	3 cut(s)	494, 580, 804
Asp700I	GAANNNNTTC	1 cut(s)	807
AspS9I	GGNCC	2 cut(s)	200, 407
AsuC2I	CCSGG	2 cut(s)	254, 1133
AsuNHI	GCTAGC	1 cut(s)	839
BbrPI	CACGTG	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	461, 748
BccI	CCATC	5 cut(s)	181, 405, 884, 903, 1185
BceAI	ACGGC	1 cut(s)	1121
BcgI	CGANNNNNNTGC	2 cut(s)	577, 611
BciT130I	CCWGG	3 cut(s)	96, 642, 1185
BclI	TGATCA	1 cut(s)	936
BcnI	CCSGG	2 cut(s)	254, 1133
BcoDI	GTCTC	2 cut(s)	119, 331
BfaI	CTAG	2 cut(s)	840, 860
BfmI	CTRYAG	3 cut(s)	707, 741, 900
BfuAI	ACCTGC	2 cut(s)	711, 1097
BisI	GCNGC	3 cut(s)	450, 728, 737
BlsI	GCNGC	3 cut(s)	451, 729, 738
Bme1390I	CCNGG	5 cut(s)	96, 254, 642, 1133, 1185
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	200, 407
BmrFI	CCNGG	5 cut(s)	96, 254, 642, 1133, 1185
BmsI	GCATC	3 cut(s)	493, 515, 952
BmtI	GCTAGC	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	235
BpuEI	CTTGAG	2 cut(s)	365, 758
BpuMI	CCSGG	2 cut(s)	254, 1133
BsaAI	YACGTR	2 cut(s)	369, 760
BsaJI	CCNNGG	3 cut(s)	640, 1131, 1184
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 283, 709
Bse1I	ACTGG	2 cut(s)	233, 1038
Bse3DI	GCAATG	2 cut(s)	85, 690
BseBI	CCWGG	3 cut(s)	96, 642, 1185
BseDI	CCNNGG	3 cut(s)	640, 1131, 1184
BseGI	GGATG	4 cut(s)	192, 636, 895, 939
BseLI	CCNNNNNNNGG	3 cut(s)	119, 283, 709
BseMI	GCAATG	2 cut(s)	85, 690
BseMII	CTCAG	2 cut(s)	469, 573
BseNI	ACTGG	2 cut(s)	233, 1038
BseX3I	CGGCCG	1 cut(s)	1134
BseXI	GCAGC	2 cut(s)	461, 748
Bsh1236I	CGCG	1 cut(s)	730
Bsh1285I	CGRYCG	1 cut(s)	1137
BshFI	GGCC	4 cut(s)	202, 408, 1136, 1175
BsiEI	CGRYCG	1 cut(s)	1137
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	254, 1133
BslFI	GGGAC	1 cut(s)	1113
BslI	CCNNNNNNNGG	3 cut(s)	119, 283, 709
BsmAI	GTCTC	2 cut(s)	119, 331
BsmFI	GGGAC	1 cut(s)	1113
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	202, 408, 1136, 1175
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
BspACI	CCGC	2 cut(s)	534, 728
BspANI	GGCC	4 cut(s)	202, 408, 1136, 1175
BspCNI	CTCAG	2 cut(s)	468, 572
BspFNI	CGCG	1 cut(s)	730
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	2 cut(s)	711, 1097
BspOI	GCTAGC	1 cut(s)	843
BspPI	GGATC	4 cut(s)	264, 371, 424, 1160
BspQI	GCTCTTC	1 cut(s)	918
BsrDI	GCAATG	2 cut(s)	85, 690
BsrI	ACTGG	2 cut(s)	233, 1038
BssECI	CCNNGG	3 cut(s)	640, 1131, 1184
BssMI	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
Bst2UI	CCWGG	3 cut(s)	96, 642, 1185
Bst4CI	ACNGT	3 cut(s)	135, 1027, 1083
Bst6I	CTCTTC	3 cut(s)	160, 438, 918
BstBAI	YACGTR	2 cut(s)	369, 760
BstC8I	GCNNGC	2 cut(s)	86, 841
BstDEI	CTNAG	2 cut(s)	455, 559
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstF5I	GGATG	4 cut(s)	192, 636, 895, 939
BstFNI	CGCG	1 cut(s)	730
BstKTI	GATC	8 cut(s)	259, 366, 432, 529, 757, 939, 1014, 1168
BstMAI	GTCTC	2 cut(s)	119, 331
BstMBI	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
BstMCI	CGRYCG	1 cut(s)	1137
BstMWI	GCNNNNNNNGC	4 cut(s)	414, 733, 736, 1112
BstNI	CCWGG	3 cut(s)	96, 642, 1185
BstSCI	CCNGG	5 cut(s)	94, 252, 640, 1131, 1183
BstSFI	CTRYAG	3 cut(s)	707, 741, 900
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	2 cut(s)	461, 748
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	3 cut(s)	404, 1110, 1191
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	1134
BsuRI	GGCC	4 cut(s)	202, 408, 1136, 1175
BtsCI	GGATG	4 cut(s)	192, 636, 895, 939
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	1 cut(s)	909
BveI	ACCTGC	2 cut(s)	711, 1097
Cac8I	GCNNGC	2 cut(s)	86, 841
Cfr13I	GGNCC	2 cut(s)	200, 407
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	4 cut(s)	370, 376, 827, 1139
CviAII	CATG	4 cut(s)	359, 477, 929, 975
CviQI	GTAC	4 cut(s)	370, 376, 827, 1139
DdeI	CTNAG	2 cut(s)	455, 559
DpnI	GATC	8 cut(s)	258, 365, 431, 528, 756, 938, 1013, 1167
DpnII	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
DraI	TTTAAA	1 cut(s)	1087
DriI	GACNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	1134
EagI	CGGCCG	1 cut(s)	1134
Eam1104I	CTCTTC	3 cut(s)	160, 438, 918
Eam1105I	GACNNNNNGTC	1 cut(s)	344
EarI	CTCTTC	3 cut(s)	160, 438, 918
EclXI	CGGCCG	1 cut(s)	1134
Eco52I	CGGCCG	1 cut(s)	1134
Eco57I	CTGAAG	1 cut(s)	819
Eco72I	CACGTG	1 cut(s)	760
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	3 cut(s)	94, 640, 1183
EcoT22I	ATGCAT	1 cut(s)	508
FaeI	CATG	4 cut(s)	362, 480, 932, 978
FaqI	GGGAC	1 cut(s)	1113
FatI	CATG	4 cut(s)	358, 476, 928, 974
FbaI	TGATCA	1 cut(s)	936
Fnu4HI	GCNGC	3 cut(s)	450, 728, 737
FokI	GGATG	4 cut(s)	199, 623, 882, 946
Fsp4HI	GCNGC	3 cut(s)	450, 728, 737
FspBI	CTAG	2 cut(s)	840, 860
GluI	GCNGC	3 cut(s)	450, 728, 737
HaeIII	GGCC	4 cut(s)	202, 408, 1136, 1175
HapII	CCGG	2 cut(s)	254, 1133
Hin1II	CATG	4 cut(s)	362, 480, 932, 978
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	67, 557
HpaI	GTTAAC	1 cut(s)	795
HpaII	CCGG	2 cut(s)	254, 1133
Hpy166II	GTNNAC	6 cut(s)	55, 634, 665, 700, 795, 1141
Hpy188I	TCNGA	7 cut(s)	160, 458, 519, 562, 574, 892, 1011
Hpy188III	TCNNGA	5 cut(s)	178, 211, 382, 775, 812
Hpy8I	GTNNAC	6 cut(s)	55, 634, 665, 700, 795, 1141
HpyAV	CCTTC	4 cut(s)	181, 328, 634, 1186
HpyCH4III	ACNGT	3 cut(s)	135, 1027, 1083
HpyCH4IV	ACGT	2 cut(s)	368, 759
HpyCH4V	TGCA	7 cut(s)	78, 358, 506, 512, 602, 683, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	414, 733, 736, 1112
HpyF3I	CTNAG	2 cut(s)	455, 559
HpySE526I	ACGT	2 cut(s)	368, 759
Hsp92II	CATG	4 cut(s)	362, 480, 932, 978
Ksp22I	TGATCA	1 cut(s)	936
KspAI	GTTAAC	1 cut(s)	795
Kzo9I	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	2 cut(s)	20, 399
Lsp1109I	GCAGC	2 cut(s)	461, 748
LweI	GCATC	3 cut(s)	493, 515, 952
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	2 cut(s)	840, 860
MaeII	ACGT	2 cut(s)	368, 759
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	8 cut(s)	258, 365, 431, 528, 756, 938, 1013, 1167
MboI	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
MboII	GAAGA	9 cut(s)	130, 147, 240, 455, 471, 589, 779, 812, 935
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	9 cut(s)	204, 217, 262, 289, 438, 494, 580, 804, 914
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	508
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	6 cut(s)	420, 794, 818, 917, 1086, 1145
MspI	CCGG	2 cut(s)	254, 1133
MspR9I	CCNGG	5 cut(s)	96, 254, 642, 1133, 1185
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	3 cut(s)	96, 642, 1185
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	4 cut(s)	414, 733, 736, 1112
NciI	CCSGG	2 cut(s)	254, 1133
NdeII	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
NheI	GCTAGC	1 cut(s)	839
NlaIII	CATG	4 cut(s)	362, 480, 932, 978
NsiI	ATGCAT	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	918
PctI	GAATGC	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	451, 729, 738
PleI	GAGTC	1 cut(s)	551
PmaCI	CACGTG	1 cut(s)	760
PmlI	CACGTG	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	551
Ppu21I	YACGTR	2 cut(s)	369, 760
PsiI	TTATAA	1 cut(s)	35
Psp6I	CCWGG	3 cut(s)	94, 640, 1183
PspCI	CACGTG	1 cut(s)	760
PspGI	CCWGG	3 cut(s)	94, 640, 1183
PspPI	GGNCC	2 cut(s)	200, 407
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	4 cut(s)	371, 377, 828, 1140
RsaNI	GTAC	4 cut(s)	370, 376, 827, 1139
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	6 cut(s)	420, 794, 818, 917, 1086, 1145
SatI	GCNGC	3 cut(s)	450, 728, 737
Sau3AI	GATC	8 cut(s)	256, 363, 429, 526, 754, 936, 1011, 1165
Sau96I	GGNCC	2 cut(s)	200, 407
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	5 cut(s)	96, 254, 642, 1133, 1185
SduI	GDGCHC	1 cut(s)	396
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	3 cut(s)	493, 515, 952
SfcI	CTRYAG	3 cut(s)	707, 741, 900
SmlI	CTYRAG	2 cut(s)	380, 773
SmoI	CTYRAG	2 cut(s)	380, 773
Sse9I	AATT	9 cut(s)	204, 217, 262, 289, 438, 494, 580, 804, 914
SsiI	CCGC	2 cut(s)	534, 728
SspMI	CTAG	2 cut(s)	840, 860
StyD4I	CCNGG	5 cut(s)	94, 252, 640, 1131, 1183
TaaI	ACNGT	3 cut(s)	135, 1027, 1083
TaiI	ACGT	2 cut(s)	371, 762
TaqI	TCGA	1 cut(s)	753
TasI	AATT	9 cut(s)	204, 217, 262, 289, 438, 494, 580, 804, 914
TatI	WGTACW	1 cut(s)	826
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	6 cut(s)	420, 794, 818, 917, 1086, 1145
Tru9I	TTAA	6 cut(s)	420, 794, 818, 917, 1086, 1145
TscAI	CASTG	1 cut(s)	909
TseI	GCWGC	2 cut(s)	449, 736
TspDTI	ATGAA	3 cut(s)	163, 287, 595
TspGWI	ACGGA	2 cut(s)	338, 935
TspRI	CASTG	1 cut(s)	909
Van91I	CCANNNNNTGG	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	707
XapI	RAATTY	3 cut(s)	494, 580, 804
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	2 cut(s)	840, 860
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.