Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001591

Physical Location & Seq

Genomic Coordinates Forward (+)

4515464 .. 4520306

Gene Structure 4843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTTCACGCCACAGAGAAAACAATGGATGTCACCGGCAATGACGCCGAGAAGCGAGACGCATAAAATCGGCGGTGTTACTAACCCTAGAAACGCTGATAGAAAAGGAAAGGCGGTTGCTTTCAGTGATGACCTAGTAATACCGACTCTTCCTCCGCCTCCGATTGGAACACTGACCGGACAAGGCGTTTCTCGAGGTCACACTGATGATATGGATATGGGTGATTGGAGAAGGTTTAGGGAAGTGGGTTTGTTGAATGAGGCTTCAATGGAGAAGAAAGATCAAGAAGCTCTTCTTGAAAAGATCTCTACACTTGAAAAAGAGTTATATGGCTATCAGCACAATATGGGGCTTCTTCTTATGGAGAACAAAGAGTTGGTTTCAAAGCACGAACAACTAAATCAGGCATTCCAAGAAGCTCAAGAAATCCTTAAAAGGGAACAGTCATCACATCTGTATGCATTGACGACGGTTGAACAACGTGAAGAAAACTTGAGGAAAGCCTTGGGTCTGGAAAAGCAATGTGTGCAAGAGCTTGAGAAGGCTCTTCGTGAAATTCAAGAGGAGAATAGCAAGATAAGGCTGAGTTCTGAAGCTAAATTAGTTGAAGCAAATGCTCTGGTTGCTAGTGTAAACGGGAGATCTTCAGACGTGGAAAACAAGATTTACTCTGCCGAAAGCAAGCTCGCAGAGGCAACTAGAAAGAGCTCCGAGCTGAAATTGAGATTGAAGGAAGTGGAGACTCGTGAAAGTGTCCTGCAACAAGAACGGCTTTCATTTACTAAAGAGCGAGAATCATATGAAGGGACTTTCCAAAAGCAAAGAGAGTACCTTAATGAATGGGAGAAAAAGCTTCAAGGAAAGGAAGAATCCATAACTGAGCAGAAGAGAAACCTGAATCAAAGAGAGGAAAAGGTTAATGAAATAGAAAAGAAGCTGAAGCTGAAAGAAAAAGAACTTGAAGAATGGAATAGAAAGGTTGATTTGTCTATGTCGAAGTCTAAAGAAACTGAAGAGGACATAACTAAACGTTTGGAAGAATTGACTACAAAAGAGAAAGAAGCTCACACACTCCAGATCACGCTATTGGCAAAGGAGAATGAGTTACGAGCATTTGAAGAGAAGCTCATTGCTAGAGAAGGGGTAATTTTAGGGTATAGCTTTTGTAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

391

Amino Acids

45.36

Weight (kDa)

5.96

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13220 AT1G13220 AT1G13220
fragaria_vesca	FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241
malus_domestica	MD13G1048500.v1.1 MD16G1049800.v1.1
prunus_persica	Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1
pyrus_communis	pycom13g04280 pycom16g04330 pycom16g04350
rosa_chinensis	RchiOBHm_Chr4g0436091 RchiOBHm_Chr4g0436101 RchiOBHm_Chr7g0226101
rosa_laevigata	RLG00000001768 RLG00000006539
rosa_multiflora	Rmu_co7990620.1_g000001 Rmu_co8047562.1_g000001 Rmu_co8303205.1_g000001 Rmu_sc0000456.1_g000001 Rmu_sc0006301.1_g000004 Rmu_sc0027081.1_g000001 Rmu_sc0043134.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233250 Rroxscaffold_5G00377210
rosa_rugosa	Rorug04G0291800 Rorug04G0291900 Rorug04G0292000 Rorug07G0234900 Rorug07G0235000
rosa_samantha	Rh4AG346000 Rh4BG355000 Rh4BG355100 Rh4CG369500 Rh4CG369600 Rh4CG369700 Rh4DG348700 Rh7AG368200 Rh7BG369100 Rh7CG386500 Rh7DG380100
rosa_wichuraiana	Rw2G017160 Rw4G030240 Rw7G031950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 113, 155
AclI	AACGTT	1 cut(s)	1030
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	4 cut(s)	612, 630, 959, 1032
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	2 cut(s)	164, 436
AjiI	CACGTC	1 cut(s)	652
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	2 cut(s)	50, 734
Ama87I	CYCGRG	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	24, 233
AvaI	CYCGRG	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	710
BauI	CACGAG	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	710
BceAI	ACGGC	1 cut(s)	785
BcoDI	GTCTC	2 cut(s)	50, 734
BfaI	CTAG	5 cut(s)	87, 134, 627, 699, 1134
BglII	AGATCT	2 cut(s)	303, 641
BmeT110I	CYCGRG	1 cut(s)	192
BmgBI	CACGTC	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	1058
BpuEI	CTTGAG	3 cut(s)	405, 514, 557
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 1088, 1118
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 436
Bse118I	RCCGGY	1 cut(s)	34
Bse3DI	GCAATG	3 cut(s)	45, 527, 1128
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	164, 436
BseMI	GCAATG	3 cut(s)	45, 527, 1128
BseMII	CTCAG	2 cut(s)	575, 870
BseRI	GAGGAG	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	710
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	35, 177
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	2 cut(s)	164, 436
BsmAI	GTCTC	2 cut(s)	50, 734
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	820
BsmI	GAATGC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp143I	GATC	4 cut(s)	280, 303, 641, 1077
BspACI	CCGC	3 cut(s)	72, 113, 155
BspCNI	CTCAG	2 cut(s)	576, 871
BspQI	GCTCTTC	2 cut(s)	297, 552
BsrDI	GCAATG	3 cut(s)	45, 527, 1128
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	4 cut(s)	280, 303, 641, 1077
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	744
Bst4CI	ACNGT	2 cut(s)	444, 472
Bst6I	CTCTTC	6 cut(s)	153, 297, 552, 881, 1008, 1113
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	683, 687
BstDEI	CTNAG	2 cut(s)	584, 879
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	4 cut(s)	283, 306, 644, 1080
BstMAI	GTCTC	2 cut(s)	50, 734
BstMBI	GATC	4 cut(s)	280, 303, 641, 1077
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 623
BstX2I	RGATCY	2 cut(s)	303, 641
BstYI	RGATCY	2 cut(s)	303, 641
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	130, 170, 201
Cac8I	GCNNGC	2 cut(s)	683, 687
Cfr10I	RCCGGY	1 cut(s)	34
CseI	GACGC	2 cut(s)	52, 67
Csp6I	GTAC	1 cut(s)	829
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	2 cut(s)	584, 879
DpnI	GATC	4 cut(s)	282, 305, 643, 1079
DpnII	GATC	4 cut(s)	280, 303, 641, 1077
Eam1104I	CTCTTC	6 cut(s)	153, 297, 552, 881, 1008, 1113
EarI	CTCTTC	6 cut(s)	153, 297, 552, 881, 1008, 1113
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	4 cut(s)	612, 630, 959, 1032
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	50
FalI	AAGNNNNNCTT	8 cut(s)	276, 308, 279, 311, 414, 446, 756, 788
FaqI	GGGAC	1 cut(s)	820
FauNDI	CATATG	1 cut(s)	799
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	710
FspBI	CTAG	5 cut(s)	87, 134, 627, 699, 1134
GsuI	CTGGAG	1 cut(s)	1058
HapII	CCGG	2 cut(s)	35, 177
HgaI	GACGC	2 cut(s)	52, 67
Hin1I	GRCGYC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	5 cut(s)	145, 742, 794, 869, 898
HpaII	CCGG	2 cut(s)	35, 177
HphI	GGTGA	2 cut(s)	24, 233
Hpy166II	GTNNAC	2 cut(s)	6, 634
Hpy188I	TCNGA	4 cut(s)	162, 592, 649, 712
Hpy188III	TCNNGA	9 cut(s)	192, 284, 296, 422, 512, 551, 560, 746, 1075
Hpy8I	GTNNAC	2 cut(s)	6, 634
Hpy99I	CGWCG	1 cut(s)	472
HpyAV	CCTTC	5 cut(s)	225, 535, 724, 797, 1133
HpyCH4III	ACNGT	2 cut(s)	444, 472
HpyCH4IV	ACGT	3 cut(s)	481, 651, 1030
HpyCH4V	TGCA	3 cut(s)	461, 529, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 623
HpyF3I	CTNAG	2 cut(s)	584, 879
HpySE526I	ACGT	3 cut(s)	481, 651, 1030
Hsp92I	GRCGYC	1 cut(s)	44
Kzo9I	GATC	4 cut(s)	280, 303, 641, 1077
LguI	GCTCTTC	2 cut(s)	297, 552
LmnI	GCTCC	1 cut(s)	713
LpnPI	CCDG	8 cut(s)	48, 190, 389, 497, 605, 770, 908, 1088
MaeI	CTAG	5 cut(s)	87, 134, 627, 699, 1134
MaeII	ACGT	3 cut(s)	481, 651, 1030
MaeIII	GTNAC	4 cut(s)	30, 76, 197, 1104
MalI	GATC	4 cut(s)	282, 305, 643, 1079
MboI	GATC	4 cut(s)	280, 303, 641, 1077
MflI	RGATCY	2 cut(s)	303, 641
MhlI	GDGCHC	1 cut(s)	710
MluCI	AATT	5 cut(s)	555, 599, 719, 1040, 1146
MlyI	GAGTC	2 cut(s)	139, 736
MnlI	CCTC	9 cut(s)	162, 168, 188, 253, 489, 556, 685, 901, 1009
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	3 cut(s)	432, 834, 918
MslI	CAYNNNNRTG	2 cut(s)	204, 456
MspI	CCGG	2 cut(s)	35, 177
Mva1269I	GAATGC	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	526, 623
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	4 cut(s)	280, 303, 641, 1077
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	30, 197
NsiI	ATGCAT	1 cut(s)	463
PaeR7I	CTCGAG	1 cut(s)	192
PciSI	GCTCTTC	2 cut(s)	297, 552
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	794, 869, 898
PleI	GAGTC	2 cut(s)	139, 736
PpsI	GAGTC	2 cut(s)	139, 736
Psp124BI	GAGCTC	1 cut(s)	710
Psp1406I	AACGTT	1 cut(s)	1030
PsuI	RGATCY	2 cut(s)	303, 641
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
RseI	CAYNNNNRTG	2 cut(s)	204, 456
SacI	GAGCTC	1 cut(s)	710
SapI	GCTCTTC	2 cut(s)	297, 552
SaqAI	TTAA	3 cut(s)	432, 834, 918
Sau3AI	GATC	4 cut(s)	280, 303, 641, 1077
SchI	GAGTC	2 cut(s)	139, 736
SduI	GDGCHC	1 cut(s)	710
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	204, 456
SmlI	CTYRAG	4 cut(s)	192, 420, 493, 536
SmoI	CTYRAG	4 cut(s)	192, 420, 493, 536
Sse9I	AATT	5 cut(s)	555, 599, 719, 1040, 1146
SsiI	CCGC	3 cut(s)	72, 113, 155
SspMI	CTAG	5 cut(s)	87, 134, 627, 699, 1134
SstI	GAGCTC	1 cut(s)	710
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	444, 472
TaiI	ACGT	3 cut(s)	484, 654, 1033
TaqI	TCGA	2 cut(s)	193, 995
TasI	AATT	5 cut(s)	555, 599, 719, 1040, 1146
TfiI	GAWTC	3 cut(s)	794, 869, 898
Tru1I	TTAA	3 cut(s)	432, 834, 918
Tru9I	TTAA	3 cut(s)	432, 834, 918
TscAI	CASTG	3 cut(s)	130, 177, 208
TseFI	GTSAC	2 cut(s)	30, 197
Tsp45I	GTSAC	2 cut(s)	30, 197
TspDTI	ATGAA	4 cut(s)	765, 816, 852, 936
TspRI	CASTG	3 cut(s)	130, 177, 208
XapI	RAATTY	1 cut(s)	555
XhoI	CTCGAG	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	5 cut(s)	87, 134, 627, 699, 1134
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.