Rmu_sc0006301.1_g000004

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006301.1
OG0001591
Physical Location & Seq
Reverse (-)
21001 .. 21497
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006301.1_g000004.1.cds

Sequence Viewer

Length: 396 bp
atgttgttcagtgcaggcacattggcagcagcatcagcagcgcctcacttgaaaagtagaaggaaggaagaatcaaatcctgaatctgttggtgtagacctgattcaggtcacaacgttaaaaactgtggagtcaacagaggaacgagttgtgagatttgcaacaccagaaccacaagacactgttaatggcaatgctgatgctgatgaaacgaagttggttgaagagagagggttgagtacggaagtgaatggcacagaatctagtggtggcaacagcacaggcggggagagtgacaacagcacaggtgatgagagcggcgatgactatgatgatgaggatcatcctggtcaagcgtcaatagggaagaagatctggaccttcttcagcacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.87

Weight (kDa)

4.29

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 318
AccI GTMKAC 1 cut(s) 96
AciI CCGC 2 cut(s) 285, 318
AclI AACGTT 1 cut(s) 116
AclWI GGATC 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 370
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 52, 224
AjnI CCWGG 1 cut(s) 346
AlwI GGATC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 26, 29, 38
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 38, 41, 50
BciT130I CCWGG 1 cut(s) 348
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 44
BglII AGATCT 1 cut(s) 372
BisI GCNGC 4 cut(s) 27, 30, 39, 319
BlsI GCNGC 4 cut(s) 28, 31, 40, 320
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 41, 190
BsaBI GATNNNNATC 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 199
BseXI GCAGC 3 cut(s) 38, 41, 50
BsgI GTGCAG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 106
Bsp143I GATC 2 cut(s) 340, 372
BspACI CCGC 2 cut(s) 285, 318
BspPI GGATC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 199
BssMI GATC 2 cut(s) 340, 372
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 127, 184
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 16
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 343, 375
BstMBI GATC 2 cut(s) 340, 372
BstMWI GCNNNNNNNGC 2 cut(s) 35, 38
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstV1I GCAGC 3 cut(s) 38, 41, 50
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 16, 180
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 393
CviQI GTAC 1 cut(s) 240
DpnI GATC 2 cut(s) 342, 374
DpnII GATC 2 cut(s) 340, 372
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 346
FaeI CATG 1 cut(s) 396
FaiI YATR 2 cut(s) 330, 394
FatI CATG 1 cut(s) 392
FauI CCCGC 1 cut(s) 278
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 27, 30, 39, 319
FokI GGATG 1 cut(s) 330
Fsp4HI GCNGC 4 cut(s) 27, 30, 39, 319
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 42
GluI GCNGC 4 cut(s) 27, 30, 39, 319
HaeII RGCGCY 1 cut(s) 44
HgaI GACGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 396
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 5 cut(s) 71, 83, 103, 131, 260
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 97, 135
Hpy188III TCNNGA 2 cut(s) 80, 376
Hpy8I GTNNAC 2 cut(s) 97, 135
HpyAV CCTTC 3 cut(s) 54, 58, 391
HpyCH4III ACNGT 2 cut(s) 127, 184
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 14, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 38
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 1 cut(s) 396
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 340, 372
LpnPI CCDG 9 cut(s) 92, 93, 113, 180, 267, 291, 333, 360, 361
Lsp1109I GCAGC 3 cut(s) 38, 41, 50
LweI GCATC 2 cut(s) 41, 190
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 109, 293
MalI GATC 2 cut(s) 342, 374
MbiI CCGCTC 1 cut(s) 318
MboI GATC 2 cut(s) 340, 372
MboII GAAGA 5 cut(s) 80, 236, 376, 379, 382
MflI RGATCY 1 cut(s) 372
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 4 cut(s) 54, 133, 224, 331
MseI TTAA 2 cut(s) 119, 186
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 35, 38
NdeII GATC 2 cut(s) 340, 372
NlaIII CATG 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 109, 293
PfeI GAWTC 4 cut(s) 71, 83, 103, 260
PkrI GCNGC 4 cut(s) 28, 31, 40, 320
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp1406I AACGTT 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspPI GGNCC 1 cut(s) 378
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 119, 186
SatI GCNGC 4 cut(s) 27, 30, 39, 319
Sau3AI GATC 2 cut(s) 340, 372
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 348
SetI ASST 5 cut(s) 102, 111, 119, 310, 383
SfaNI GCATC 2 cut(s) 41, 190
SinI GGWCC 1 cut(s) 378
SsiI CCGC 2 cut(s) 285, 318
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 127, 184
TaiI ACGT 1 cut(s) 119
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 4 cut(s) 71, 83, 103, 260
Tru1I TTAA 2 cut(s) 119, 186
Tru9I TTAA 2 cut(s) 119, 186
TscAI CASTG 2 cut(s) 16, 187
TseFI GTSAC 2 cut(s) 109, 293
TseI GCWGC 3 cut(s) 26, 29, 38
Tsp45I GTSAC 2 cut(s) 109, 293
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 2 cut(s) 16, 187
VpaK11BI GGWCC 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.