Rmu_co8303205.1_g000001

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8303205.1
OG0001591
Physical Location & Seq
Forward (+)
1 .. 900
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8303205.1_g000001.1.cds

Sequence Viewer

Length: 668 bp
gaaagggttcatttgaggaggagaaggatagagaacatactaatattaatttcttgaagggagtagctgataagcaaagaaaagagctattatctgaaaggaatatgaatgaaaaggaaagggaagcgcttgcactgcagcagaaggagctggaagcgaaccaacttgaaacgcgagaagacatagatcagcttgacaagcttagcaagaagatcaagtgccagagggaacagctgattggggaaagaggaaaggaatccaactttcttgctgatgaggaagcaagaggtcctagcagtcatgaagagcctcagccatctcttaggagatgtaatgactcggccaatgctcaagcagtcgtaactgataacaactctaaggaggcggatgatgggtatgctccatcaattgacgatcacagtttcattgacagccatgagcaagacattccagaagattctgagcagtcagagctgaaaagtggccgacgaaaaccagctagtggacgcaaatctagattgtctagaacacactcagtgaaggcagttgttgaagacgcaaagaaatttttaggagaaactccagaagcatcaaatgcaagtttgctcaatgagagtagttacataaatgaaggtgattccagttttacgagcatcagtcggaaacga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.07

Weight (kDa)

5.2

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 502
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 385
AcoI YGGCCR 2 cut(s) 341, 483
AcsI RAATTY 1 cut(s) 565
AdeI CACNNNGTG 1 cut(s) 537
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 502
AgsI TTSAA 3 cut(s) 57, 169, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 8 cut(s) 67, 87, 150, 192, 201, 234, 474, 499
AluI AGCT 8 cut(s) 67, 87, 150, 192, 201, 234, 474, 499
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 2 cut(s) 341, 483
ApeKI GCWGC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 565
AseI ATTAAT 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 6
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 646
AvaII GGWCC 1 cut(s) 289
BbsI GAAGAC 2 cut(s) 185, 560
BbvCI CCTCAGC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 150
BccI CCATC 3 cut(s) 324, 385, 411
BfaI CTAG 4 cut(s) 293, 500, 515, 524
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 130
BisI GCNGC 1 cut(s) 139
BlpI GCTNAGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmsI GCATC 2 cut(s) 598, 662
BpiI GAAGAC 2 cut(s) 185, 560
BpmI CTGGAG 1 cut(s) 566
Bpu10I CCTNAGC 1 cut(s) 311
Bpu1102I GCTNAGC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 641
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 3 cut(s) 325, 452, 548
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 343, 485
BslI CCNNNNNNNGG 1 cut(s) 502
BsnI GGCC 2 cut(s) 343, 485
Bsp143I GATC 3 cut(s) 186, 212, 414
Bsp1720I GCTNAGC 1 cut(s) 202
BspACI CCGC 1 cut(s) 385
BspANI GGCC 2 cut(s) 343, 485
BspCNI CTCAG 3 cut(s) 324, 453, 547
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 140
BspQI GCTCTTC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 641
BssMI GATC 3 cut(s) 186, 212, 414
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 6 cut(s) 202, 311, 322, 377, 461, 534
BstF5I GGATG 1 cut(s) 393
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 189, 215, 417
BstMBI GATC 3 cut(s) 186, 212, 414
BstMWI GCNNNNNNNGC 5 cut(s) 135, 147, 198, 471, 595
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 2 cut(s) 185, 560
BsuRI GGCC 2 cut(s) 343, 485
BtsCI GGATG 1 cut(s) 393
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 542
Cac8I GCNNGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 2 cut(s) 515, 565
CviAII CATG 2 cut(s) 301, 436
DdeI CTNAG 6 cut(s) 202, 311, 322, 377, 461, 534
DpnI GATC 3 cut(s) 188, 214, 416
DpnII GATC 3 cut(s) 186, 212, 414
DraIII CACNNNGTG 1 cut(s) 537
EaeI YGGCCR 2 cut(s) 341, 483
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 289
Eco47III AGCGCT 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 289
FaeI CATG 2 cut(s) 304, 439
FaiI YATR 7 cut(s) 38, 106, 184, 302, 398, 437, 625
FatI CATG 2 cut(s) 300, 435
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 4 cut(s) 293, 500, 515, 524
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 566
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 2 cut(s) 343, 485
HgaI GACGC 2 cut(s) 515, 565
HhaI GCGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 304, 439
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 4 cut(s) 256, 337, 457, 637
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 4 cut(s) 96, 462, 471, 662
Hpy188III TCNNGA 6 cut(s) 54, 301, 451, 515, 524, 583
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 5 cut(s) 18, 51, 138, 534, 625
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 133, 138, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 135, 147, 198, 471, 595
HpyF3I CTNAG 6 cut(s) 202, 311, 322, 377, 461, 534
Hsp92II CATG 2 cut(s) 304, 439
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 186, 212, 414
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 2 cut(s) 147, 405
LpnPI CCDG 6 cut(s) 136, 235, 464, 509, 596, 654
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 2 cut(s) 598, 662
MaeI CTAG 4 cut(s) 293, 500, 515, 524
MaeIII GTNAC 2 cut(s) 360, 619
MalI GATC 3 cut(s) 188, 214, 416
MboI GATC 3 cut(s) 186, 212, 414
MboII GAAGA 5 cut(s) 190, 222, 316, 466, 565
MfeI CAATTG 1 cut(s) 407
MluCI AATT 3 cut(s) 48, 407, 565
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 284, 640
MnlI CCTC 8 cut(s) 9, 12, 218, 241, 270, 280, 320, 375
MroXI GAANNNNTTC 1 cut(s) 6
MseI TTAA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 234
MunI CAATTG 1 cut(s) 407
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 135, 147, 198, 471, 595
NdeII GATC 3 cut(s) 186, 212, 414
NlaIII CATG 2 cut(s) 304, 439
NmeAIII GCCGAG 1 cut(s) 319
PagI TCATGA 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 256, 457, 637
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 289
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PstI CTGCAG 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 3 cut(s) 186, 212, 414
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 331
SfaNI GCATC 2 cut(s) 598, 662
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 3 cut(s) 48, 407, 565
SsiI CCGC 1 cut(s) 385
SspI AATATT 1 cut(s) 45
SspMI CTAG 4 cut(s) 293, 500, 515, 524
TaaI ACNGT 1 cut(s) 421
TasI AATT 3 cut(s) 48, 407, 565
TfiI GAWTC 3 cut(s) 256, 457, 637
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 140, 542
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 5 cut(s) 121, 125, 317, 414, 644
TspRI CASTG 2 cut(s) 140, 542
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 289
VspI ATTAAT 1 cut(s) 47
XapI RAATTY 1 cut(s) 565
XbaI TCTAGA 2 cut(s) 514, 523
XmnI GAANNNNTTC 1 cut(s) 6
XspI CTAG 4 cut(s) 293, 500, 515, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.