MD16G1049800.v1.1

nuclear matrix constituent protein 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
3496158 .. 3502205
6048 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1049800.v1.1.491

Sequence Viewer

Length: 3654 bp
ATGTTCACGCCGCAGAGGAAGGCGTCGACGGCGGCTCTGTCGCTGACGCCGAGGAGCGGCGGCGGCGTTGTTTCGAACCCTAGGAATACTGAGAAGGGTAAAGCGGTGGTACTTGTGGACGGTCCGCCTCCGCCATTGGGCTCGCTGAGTGAGAGCGGACCTTATACGACTGTGGGATTTGATAGCGGTGATATGGACGATTGGAGGGCGTTCAAGGAAGCCGGGTTACTTGATGAGGCGGCCATGGACCGCAAGGACCGCCAAGCTCTCGCCGAGAAGGTCTCTAAGCTTCAAACAGAGCTTTTTAGTTACCAGTATAATATGGGGCTTCTTTTGATTGAGAAGAAAGAGTGGGCTTCGAAGCACGAAGAATTGACCGAAGCTTTGGTTGAAACCCAAGAGATTCTTAACCGTGAAAAGTCTGCGCACTTGATTGCGGTATCTGAGGTTGAGAAACGGGAGGAGAATTTACGGAGAGTCTTGTTCGCTGAGAAGCAGTGTGTAGCTCAGCTCGAAAAGGCTTTGCTTGAAATGCACGAGGAGCATGCCCAAATAAGGCGCGAGGCCGAAGCAAAGATGGCTGATGCAAGTTCATTCGTTGTGGGAATTGAAGAAAAGTCTTTGGAGACAGATGCAAAGTTGTGTGCTGCTTATGCCAAGCTCGGTGAGGTCAACAGAAAGAGTTCAGAGTTGGACATGAGATTGCAAGAGGTGGAGGCCCGCGAAAGTGTGCTTCGAAGAGAGCAATTTTCCTTAAGTGCGGAGCAAGAGGCTCACAAGACAACTTTTTACAAACAAAGGGAAGAATTGAAAGAATGGGAGAGGAAGTTAGAAGAAAGGGAAGAGAGGTTATGCAAGCTTCGGAGAACTTTAAATGAGAAGGAGGAAAAGTCAAATCAAAATGATATGATTATGAAGCAAAGAGAGAAGGACATTGAAGAAGCACAAAGGAAGATTGAAGCTTTGAACACTATGTTGAAAGAAATGGAAGCTGATGTGAATAAACGGCTAGATGACTTAGTATCAAAGGAAAAGGAAGCTAATTCTGTGAGGAACGTCTTAGAGTTGAAGGAGAAAGATTTACAGGAATTTGAGCAAAAACTAAGTTTGCAAGAAAATGTGGAGATTCAAGAGGTGCTTGACAAGCACAGAGCTATTCTCAATACGGAAATGCAGGAGTTTGAGTTGGAAATGGAAGAAAGGAGGGAGACTCTGAACAAGGAACTTAGGAGCAAGGTTGATGGGGTGGAACAGAAGGAATTGGAAATCAGCCACAGGGAAGAAAAGTTGTCGAAGAGGAAACAAGCACTGCATGAGAAATCAGAGAGGTTGAATGAGAAAAATAATGAACTTGAAACAAAGCTGAAAACTTTGAAGGAGAACGAGAAAGCCATCAAAGCTAATGAGAAAATGTTAGAGGTGGAAAAGCAACAATTACTTGCTGATATAGAGTGTCTTCAGAATCTTAGAGATGAAATTCAGAAGATAAAGGATGAAAACCTTCAACTGGAGCTCCAGATTCGTGAAGAGAGAGAGAAGCAGGTAATTACTCAGGAAGAGAGGTCAGAGCACCTCCGTTTGCTGTCGGAATTGCAGCAGGAATTAAGGACTTATAGACTTCAAAATGAGTTGCTTTTGAAGGAAACTGAAGATTTGAAGCAGCAGAGGGAAAAGTTTGAGGAAGAGTGGGAGGAATTGGATGAGAGAAAAGCTGAAATTAGCAGAGATCTTGAGAAAATTGTTGAAGAGAAAGAAAATTTAGAAAAATTACAGGGCATGGAGGAAGAAAGGCTGAAAAAAGAGAAACATGCAATGCAAGATTACATACAGAGCGAGCAGGACAGTCTCAAGCTTGAGAAAGAATCATTTGTGTCTAAGATGAGAAATGAGCAGTTAGCCTTAGCTGAAAAGGCCCAATTCGAGCATAGTCAAATGGTTCAAGATTTTGAGTCACGGAATAGAGATCTTGAGGCTGATATGCAGAATAGGGAGCAGGAAATGAAGAAAGGCCTGCAGGAAATGGAGAGAGCATTTGAGGAGGAGAAGGATAGAGAACATTCTAATATTAATTACTTGAAGGGAGTCACTAATGAGCAAATGGAAGAATTAAGATCTGAAAGGCATAGAATGGAAAGGGAAAGGGAAGAACTTGCTCTGAACAAGAAGCAGCAAGAAGTTATCCAACTTGAAATGCGCAAAGACATTGGTCAGCTTGATATCCTTAGCAAGGGGATCAAGCAGCAGCGGGAACAACTTATTGAGGAAAGACGACACTTCCTTTCTTGTGTTGAGAAGCTGAAAAGTTGCAAGGACTGTGGAGAAATGACAAGGGAATTTGTACTTTCTGATCTCCAGGTATCGGCAGTGTTCCAAGTTGAGGCTGTTTCTCTGCCGAGGGTCAATGTTGATTTTTTAAAGAACTCTCCAGCTGATTCAGGTGTTCCTGAATTGGAATACACAGAATCAGGATGGGGAACATCTTTGCTGCGCAAATGCAAGTCAATTGTTTCTAAAGTATCTCCAATTAAAAAACTGGAGCATATTACTGATGCAGGGTCTTCAGAGTTGCCCCCAGTATCAACTATTCAAGTTAATACTGAAGAGAAAAGAAACGAGTCTAATATGCTTATCAATGAGGGAGCAAGAGGGCACATCGGTCATGAAGATGAAGCTGGGGCATCCTTTAGGATGCCTAATGACTCTAGTGCTCAACCACTACCATCTGATAACACCACCAAGGAAGTGGATGATGGGTGTGCTCCATCAATTGATGATCATAGCTTCATTGACAGTAAGGTGAAAGATGTTCCTGATGATTCTGAGCAATCCGAGCTGAAGAGTGGTCGGCAAAAACCGGCTAGGGGACGCAAGTCCAGACTGTCTAGGACACGCACCGTGAAGGCAACAGTTGAAGAGGCAAAGAAATTTCTAGGAGATACTCCAGAAGAACCATCAAATGTAAGTATGCTGCCTAATGATAGTAGTTACAATCATGAAGCAAGTCGGGGTGATTCCAGTTTTGCTGAGAAAGCTAATAGTAGCATTGGGAGGAAACGAATGCATGCTCAGACCTCTAGGATTACTGAAAGTGAGCAAGATAATTGTGACAGCGAAGGATGTTCTGGCAGTGTCGCAACAGCTGGTGGGCGCAGGAAGAGGCGACAACCCATTGCTTCCTCCGTGCAAACACCTGGAGAGCAGCGATATAATCTCAGACATCGCAAGACTACAGGATCAGTCACAGCAGCACCAGCCACGGCTGACCTGAAGAAGAGAAATAAGGAAGAAACTGGAGGTGGTGGTGTAGAACCAATTCCTGAATCTGTTTCTGTATCGTCGTTGGGGACGGCTGGTGAGAATGGGCGGACTACACAGTTGATGCAGGTCACCACATTGAAAAGTGTGGAATTCTCACAGGAGCGGGTTGTGAGGTTTAGAACACCAAAAGAAACCGTTGATGACAATGCCGAAGCTGATGCAGCAAAATCAGTTGAAAATACAGAGTTGAGTGCAGAAGAAAATGGTACACCGGAATCTGGTGGCGGAAACAATACAAATGGCGAGAGCGACGATGATTACGATGACGAGGACGTTGAAGAGCGTCCGGGCGAGAAGTCAATAGGAAAGAAGATCTGGACTTTCTTGACAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1218

Amino Acids

139.56

Weight (kDa)

5.11

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 426, 2195, 2489
Acc36I ACCTGC 2 cut(s) 1531, 3373
AccBSI CCGCTC 3 cut(s) 57, 156, 3421
AccI GTMKAC 1 cut(s) 26
AccII CGCG 2 cut(s) 561, 723
AclWI GGATC 2 cut(s) 2240, 3241
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 7 cut(s) 466, 1088, 1476, 1756, 2333, 2924, 3407
AcuI CTGAAG 6 cut(s) 1442, 1668, 2544, 2619, 2855, 3287
AcyI GRCGYC 2 cut(s) 23, 47
AfaI GTAC 3 cut(s) 111, 2340, 3526
AfiI CCNNNNNNNGG 9 cut(s) 56, 137, 555, 1507, 2227, 2359, 2377, 2861, 3536
AflII CTTAAG 1 cut(s) 754
AjnI CCWGG 2 cut(s) 2352, 3190
Alw21I GWGCWC 4 cut(s) 1515, 1572, 2710, 2761
Alw26I GTCTC 4 cut(s) 286, 620, 1202, 1850
AlwI GGATC 2 cut(s) 2240, 3241
AoxI GGCC 5 cut(s) 240, 564, 717, 1911, 2008
ApoI RAATTY 7 cut(s) 466, 1088, 1476, 1756, 2333, 2924, 3407
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
AseI ATTAAT 1 cut(s) 2067
Asp700I GAANNNNTTC 3 cut(s) 682, 1500, 3312
AspA2I CCTAGG 1 cut(s) 80
AspLEI GCGC 5 cut(s) 427, 561, 2196, 2490, 3150
AspS9I GGNCC 6 cut(s) 122, 158, 247, 256, 718, 1912
AsuC2I CCSGG 2 cut(s) 223, 3606
AsuHPI GGTGA 6 cut(s) 200, 677, 2809, 3020, 3365, 3379
AsuII TTCGAA 3 cut(s) 74, 359, 736
AvaII GGWCC 4 cut(s) 122, 158, 247, 256
AvrII CCTAGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 2652
BanII GRGCYC 2 cut(s) 143, 1515
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 2 cut(s) 1448, 2550
Bbv12I GWGCWC 4 cut(s) 1515, 1572, 2710, 2761
BccI CCATC 8 cut(s) 571, 1235, 1400, 2463, 2728, 2744, 2770, 2959
BceAI ACGGC 4 cut(s) 45, 1022, 3273, 3363
BcgI CGANNNNNNTGC 4 cut(s) 527, 561, 3458, 3492
BciT130I CCWGG 2 cut(s) 2354, 3192
BclI TGATCA 1 cut(s) 2773
BcnI CCSGG 2 cut(s) 223, 3606
BcoDI GTCTC 4 cut(s) 286, 620, 1202, 1850
BfaI CTAG 7 cut(s) 81, 1010, 2703, 2859, 2883, 2930, 3075
BfmI CTRYAG 2 cut(s) 2012, 3228
BfrI CTTAAG 1 cut(s) 754
BfuAI ACCTGC 2 cut(s) 1531, 3373
BglII AGATCT 4 cut(s) 1726, 1963, 2111, 3630
BlnI CCTAGG 1 cut(s) 80
BlpI GCTNAGC 1 cut(s) 507
Bme1390I CCNGG 4 cut(s) 223, 2354, 3192, 3606
Bme18I GGWCC 4 cut(s) 122, 158, 247, 256
BmgT120I GGNCC 6 cut(s) 122, 158, 247, 256, 718, 1912
BmrFI CCNGG 4 cut(s) 223, 2354, 3192, 3606
BmrI ACTGGG 1 cut(s) 2567
BmsI GCATC 7 cut(s) 574, 622, 2539, 2679, 2687, 3369, 3466
BmuI ACTGGG 1 cut(s) 2567
BoxI GACNNNNGTC 2 cut(s) 2205, 2869
BpiI GAAGAC 2 cut(s) 1448, 2550
BplI GAGNNNNNCTC 6 cut(s) 266, 298, 1143, 1175, 1195, 1227
BpmI CTGGAG 8 cut(s) 1499, 1529, 2336, 2409, 2555, 2925, 3213, 3312
Bpu10I CCTNAGC 2 cut(s) 1900, 2222
Bpu1102I GCTNAGC 1 cut(s) 507
Bpu14I TTCGAA 3 cut(s) 74, 359, 736
BpuEI CTTGAG 4 cut(s) 1751, 1832, 1874, 1988
BpuMI CCSGG 2 cut(s) 223, 3606
BsaHI GRCGYC 2 cut(s) 23, 47
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 6 cut(s) 50, 80, 243, 2393, 2736, 3255
BsaWI WCCGGW 1 cut(s) 3529
BsaXI ACNNNNNCTCC 8 cut(s) 812, 842, 875, 905, 1169, 1199, 1497, 1527
Bsc4I CCNNNNNNNGG 9 cut(s) 56, 137, 555, 1507, 2227, 2359, 2377, 2861, 3536
Bse118I RCCGGY 1 cut(s) 2854
Bse1I ACTGG 6 cut(s) 313, 1512, 2538, 2573, 3015, 3295
Bse3DI GCAATG 2 cut(s) 1818, 3168
BseBI CCWGG 2 cut(s) 2354, 3192
BseDI CCNNGG 6 cut(s) 50, 80, 243, 2393, 2736, 3255
BseGI GGATG 7 cut(s) 1498, 1705, 2474, 2678, 2694, 2752, 3122
BseLI CCNNNNNNNGG 9 cut(s) 56, 137, 555, 1507, 2227, 2359, 2377, 2861, 3536
BseMI GCAATG 2 cut(s) 1818, 3168
BseNI ACTGG 6 cut(s) 313, 1512, 2538, 2573, 3015, 3295
BseRI GAGGAG 5 cut(s) 67, 476, 554, 2051, 2054
BseSI GKGCMC 1 cut(s) 2652
BseYI CCCAGC 1 cut(s) 2672
BsgI GTGCAG 1 cut(s) 3531
Bsh1236I CGCG 2 cut(s) 561, 723
BshFI GGCC 5 cut(s) 242, 566, 719, 1913, 2010
BsiHKAI GWGCWC 4 cut(s) 1515, 1572, 2710, 2761
BsiSI CCGG 4 cut(s) 222, 2855, 3530, 3605
BslFI GGGAC 2 cut(s) 2877, 3358
BslI CCNNNNNNNGG 9 cut(s) 56, 137, 555, 1507, 2227, 2359, 2377, 2861, 3536
BsmAI GTCTC 4 cut(s) 286, 620, 1202, 1850
BsmFI GGGAC 2 cut(s) 2877, 3358
BsmI GAATGC 1 cut(s) 3063
BsnI GGCC 5 cut(s) 242, 566, 719, 1913, 2010
Bso31I GGTCTC 1 cut(s) 286
Bsp119I TTCGAA 3 cut(s) 74, 359, 736
Bsp1286I GDGCHC 6 cut(s) 143, 1515, 1572, 2652, 2710, 2761
Bsp143I GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 243
BspANI GGCC 5 cut(s) 242, 566, 719, 1913, 2010
BspFNI CGCG 2 cut(s) 561, 723
BspHI TCATGA 2 cut(s) 2659, 2992
BspMAI CTGCAG 1 cut(s) 2016
BspMI ACCTGC 2 cut(s) 1531, 3373
BspPI GGATC 2 cut(s) 2240, 3241
BspQI GCTCTTC 1 cut(s) 3591
BspT104I TTCGAA 3 cut(s) 74, 359, 736
BspTI CTTAAG 1 cut(s) 754
BspTNI GGTCTC 1 cut(s) 286
BsrBI CCGCTC 3 cut(s) 57, 156, 3421
BsrDI GCAATG 2 cut(s) 1818, 3168
BsrFI RCCGGY 1 cut(s) 2854
BsrI ACTGG 6 cut(s) 313, 1512, 2538, 2573, 3015, 3295
BssAI RCCGGY 1 cut(s) 2854
BssECI CCNNGG 6 cut(s) 50, 80, 243, 2393, 2736, 3255
BssMI GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
BssNI GRCGYC 2 cut(s) 23, 47
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 3 cut(s) 80, 243, 2736
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 2354, 3192
BstACI GRCGYC 2 cut(s) 23, 47
BstAFI CTTAAG 1 cut(s) 754
BstBI TTCGAA 3 cut(s) 74, 359, 736
BstC8I GCNNGC 7 cut(s) 143, 546, 721, 857, 1835, 2012, 3063
BstDSI CCRYGG 2 cut(s) 243, 3255
BstEII GGTNACC 1 cut(s) 3385
BstENI CCTNNNNNAGG 1 cut(s) 2225
BstF5I GGATG 7 cut(s) 1498, 1705, 2474, 2678, 2694, 2752, 3122
BstFNI CGCG 2 cut(s) 561, 723
BstHHI GCGC 5 cut(s) 427, 561, 2196, 2490, 3150
BstKTI GATC 8 cut(s) 1729, 1966, 2114, 2235, 2350, 2776, 3236, 3633
BstMAI GTCTC 4 cut(s) 286, 620, 1202, 1850
BstMBI GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
BstNI CCWGG 2 cut(s) 2354, 3192
BstNSI RCATGY 3 cut(s) 548, 1811, 3065
BstPAI GACNNNNGTC 2 cut(s) 2205, 2869
BstPI GGTNACC 1 cut(s) 3385
BstSCI CCNGG 4 cut(s) 221, 2352, 3190, 3604
BstSFI CTRYAG 2 cut(s) 2012, 3228
BstSLI GKGCMC 1 cut(s) 2652
BstUI CGCG 2 cut(s) 561, 723
BstV2I GAAGAC 2 cut(s) 1448, 2550
BstX2I RGATCY 4 cut(s) 1726, 1963, 2111, 3630
BstXI CCANNNNNNTGG 1 cut(s) 2743
BstYI RGATCY 4 cut(s) 1726, 1963, 2111, 3630
BsuRI GGCC 5 cut(s) 242, 566, 719, 1913, 2010
BtgI CCRYGG 2 cut(s) 243, 3255
BtgZI GCGATG 1 cut(s) 3203
BtsCI GGATG 7 cut(s) 1498, 1705, 2474, 2678, 2694, 2752, 3122
BtsI GCAGTG 4 cut(s) 503, 1307, 2370, 3133
BtsIMutI CAGTG 4 cut(s) 503, 1307, 2370, 3133
BveI ACCTGC 2 cut(s) 1531, 3373
Cac8I GCNNGC 7 cut(s) 143, 546, 721, 857, 1835, 2012, 3063
CciI TCATGA 2 cut(s) 2659, 2992
CfoI GCGC 5 cut(s) 427, 561, 2196, 2490, 3150
Cfr10I RCCGGY 1 cut(s) 2854
Cfr13I GGNCC 6 cut(s) 122, 158, 247, 256, 718, 1912
CpoI CGGWCCG 1 cut(s) 122
CseI GACGC 4 cut(s) 12, 55, 2874, 3590
Csp6I GTAC 3 cut(s) 110, 2339, 3525
CspCI CAANNNNNGTGG 2 cut(s) 2296, 2331
CspI CGGWCCG 1 cut(s) 122
CviAII CATG 9 cut(s) 244, 545, 697, 1313, 1777, 1808, 2660, 2993, 3062
CviQI GTAC 3 cut(s) 110, 2339, 3525
DpnI GATC 8 cut(s) 1728, 1965, 2113, 2234, 2349, 2775, 3235, 3632
DpnII GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
DraI TTTAAA 2 cut(s) 873, 2415
EaeI YGGCCR 1 cut(s) 240
EciI GGCGGA 4 cut(s) 114, 120, 3379, 3558
Ecl136II GAGCTC 1 cut(s) 1513
Eco130I CCWWGG 3 cut(s) 80, 243, 2736
Eco147I AGGCCT 1 cut(s) 2010
Eco24I GRGCYC 2 cut(s) 143, 1515
Eco31I GGTCTC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 2218
Eco47I GGWCC 4 cut(s) 122, 158, 247, 256
Eco53kI GAGCTC 1 cut(s) 1513
Eco57I CTGAAG 6 cut(s) 1442, 1668, 2544, 2619, 2855, 3287
Eco91I GGTNACC 1 cut(s) 3385
EcoICRI GAGCTC 1 cut(s) 1513
EcoNI CCTNNNNNAGG 1 cut(s) 2225
EcoO65I GGTNACC 1 cut(s) 3385
EcoRI GAATTC 1 cut(s) 3407
EcoRII CCWGG 2 cut(s) 2352, 3190
EcoRV GATATC 1 cut(s) 2218
EcoT14I CCWWGG 3 cut(s) 80, 243, 2736
EcoT22I ATGCAT 1 cut(s) 3063
EcoT38I GRGCYC 2 cut(s) 143, 1515
ErhI CCWWGG 3 cut(s) 80, 243, 2736
FaeI CATG 9 cut(s) 247, 548, 700, 1316, 1780, 1811, 2663, 2996, 3065
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 1122, 1154
FaqI GGGAC 2 cut(s) 2877, 3358
FatI CATG 9 cut(s) 243, 544, 696, 1312, 1776, 1807, 2659, 2992, 3061
FauI CCCGC 3 cut(s) 728, 2238, 3414
FbaI TGATCA 1 cut(s) 2773
FblI GTMKAC 1 cut(s) 26
FokI GGATG 7 cut(s) 1505, 1712, 2481, 2665, 2701, 2759, 3129
FriOI GRGCYC 2 cut(s) 143, 1515
FspBI CTAG 7 cut(s) 81, 1010, 2703, 2859, 2883, 2930, 3075
FspI TGCGCA 3 cut(s) 426, 2195, 2489
GlaI GCGC 5 cut(s) 426, 560, 2195, 2489, 3149
GsaI CCCAGC 1 cut(s) 2676
GsuI CTGGAG 8 cut(s) 1499, 1529, 2336, 2409, 2555, 2925, 3213, 3312
HaeIII GGCC 5 cut(s) 242, 566, 719, 1913, 2010
HapII CCGG 4 cut(s) 222, 2855, 3530, 3605
HgaI GACGC 4 cut(s) 12, 55, 2874, 3590
HhaI GCGC 5 cut(s) 427, 561, 2196, 2490, 3150
Hin1I GRCGYC 2 cut(s) 23, 47
Hin1II CATG 9 cut(s) 247, 548, 700, 1316, 1780, 1811, 2663, 2996, 3065
Hin6I GCGC 5 cut(s) 425, 559, 2194, 2488, 3148
HinP1I GCGC 5 cut(s) 425, 559, 2194, 2488, 3148
HincII GTYRAC 2 cut(s) 27, 673
HindII GTYRAC 2 cut(s) 27, 673
HindIII AAGCTT 5 cut(s) 287, 381, 857, 960, 1850
HpaII CCGG 4 cut(s) 222, 2855, 3530, 3605
HphI GGTGA 6 cut(s) 200, 677, 2809, 3020, 3365, 3379
Hpy166II GTNNAC 5 cut(s) 6, 27, 118, 673, 3527
Hpy8I GTNNAC 5 cut(s) 6, 27, 118, 673, 3527
Hpy99I CGWCG 4 cut(s) 28, 31, 3340, 3572
HpyCH4IV ACGT 3 cut(s) 1056, 3591, 3650
HpySE526I ACGT 3 cut(s) 1056, 3591, 3650
Hsp92I GRCGYC 2 cut(s) 23, 47
Hsp92II CATG 9 cut(s) 247, 548, 700, 1316, 1780, 1811, 2663, 2996, 3065
HspAI GCGC 5 cut(s) 425, 559, 2194, 2488, 3148
Ksp22I TGATCA 1 cut(s) 2773
Kzo9I GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
LguI GCTCTTC 1 cut(s) 3591
LweI GCATC 7 cut(s) 574, 622, 2539, 2679, 2687, 3369, 3466
MaeI CTAG 7 cut(s) 81, 1010, 2703, 2859, 2883, 2930, 3075
MaeII ACGT 3 cut(s) 1056, 3591, 3650
MaeIII GTNAC 8 cut(s) 225, 308, 1950, 2083, 2984, 3104, 3238, 3385
MalI GATC 8 cut(s) 1728, 1965, 2113, 2234, 2349, 2775, 3235, 3632
MbiI CCGCTC 3 cut(s) 57, 156, 3421
MboI GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
MfeI CAATTG 2 cut(s) 2502, 2766
MflI RGATCY 4 cut(s) 1726, 1963, 2111, 3630
MhlI GDGCHC 6 cut(s) 143, 1515, 1572, 2652, 2710, 2761
MlyI GAGTC 6 cut(s) 486, 1204, 1958, 2091, 2624, 2693
MmeI TCCRAC 4 cut(s) 672, 1167, 1566, 2206
Mph1103I ATGCAT 1 cut(s) 3063
MroXI GAANNNNTTC 3 cut(s) 682, 1500, 3312
MseI TTAA 9 cut(s) 408, 755, 872, 1604, 2067, 2108, 2414, 2526, 2592
MslI CAYNNNNRTG 1 cut(s) 2664
MspA1I CMGCKG 3 cut(s) 2245, 2429, 3140
MspCI CTTAAG 1 cut(s) 754
MspI CCGG 4 cut(s) 222, 2855, 3530, 3605
MspR9I CCNGG 4 cut(s) 223, 2354, 3192, 3606
MunI CAATTG 2 cut(s) 2502, 2766
Mva1269I GAATGC 1 cut(s) 3063
MvaI CCWGG 2 cut(s) 2354, 3192
MvnI CGCG 2 cut(s) 561, 723
NciI CCSGG 2 cut(s) 223, 3606
NcoI CCATGG 1 cut(s) 243
NdeII GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
NlaIII CATG 9 cut(s) 247, 548, 700, 1316, 1780, 1811, 2663, 2996, 3065
NmeAIII GCCGAG 3 cut(s) 75, 298, 2418
NmuCI GTSAC 5 cut(s) 1950, 2083, 3104, 3238, 3385
NsbI TGCGCA 3 cut(s) 426, 2195, 2489
NsiI ATGCAT 1 cut(s) 3063
NspI RCATGY 3 cut(s) 548, 1811, 3065
NspV TTCGAA 3 cut(s) 74, 359, 736
PaeI GCATGC 2 cut(s) 548, 3065
PagI TCATGA 2 cut(s) 2659, 2992
PceI AGGCCT 1 cut(s) 2010
PciSI GCTCTTC 1 cut(s) 3591
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 3576
PctI GAATGC 1 cut(s) 3063
PdmI GAANNNNTTC 3 cut(s) 682, 1500, 3312
PleI GAGTC 6 cut(s) 485, 1204, 1957, 2090, 2623, 2693
PpsI GAGTC 6 cut(s) 485, 1204, 1957, 2090, 2623, 2693
PshAI GACNNNNGTC 2 cut(s) 2205, 2869
PshBI ATTAAT 1 cut(s) 2067
Psp124BI GAGCTC 1 cut(s) 1515
Psp6I CCWGG 2 cut(s) 2352, 3190
PspEI GGTNACC 1 cut(s) 3385
PspFI CCCAGC 1 cut(s) 2672
PspGI CCWGG 2 cut(s) 2352, 3190
PspPI GGNCC 6 cut(s) 122, 158, 247, 256, 718, 1912
PstI CTGCAG 1 cut(s) 2016
PsuI RGATCY 4 cut(s) 1726, 1963, 2111, 3630
PvuII CAGCTG 2 cut(s) 2429, 3140
RsaI GTAC 3 cut(s) 111, 2340, 3526
RsaNI GTAC 3 cut(s) 110, 2339, 3525
RseI CAYNNNNRTG 1 cut(s) 2664
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 1515
SalI GTCGAC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 3591
SaqAI TTAA 9 cut(s) 408, 755, 872, 1604, 2067, 2108, 2414, 2526, 2592
Sau3AI GATC 8 cut(s) 1726, 1963, 2111, 2232, 2347, 2773, 3233, 3630
Sau96I GGNCC 6 cut(s) 122, 158, 247, 256, 718, 1912
SbfI CCTGCAGG 1 cut(s) 2016
SchI GAGTC 6 cut(s) 486, 1204, 1958, 2091, 2624, 2693
ScrFI CCNGG 4 cut(s) 223, 2354, 3192, 3606
SdaI CCTGCAGG 1 cut(s) 2016
SduI GDGCHC 6 cut(s) 143, 1515, 1572, 2652, 2710, 2761
SfaNI GCATC 7 cut(s) 574, 622, 2539, 2679, 2687, 3369, 3466
SfcI CTRYAG 2 cut(s) 2012, 3228
SfuI TTCGAA 3 cut(s) 74, 359, 736
SgrDI CGTCGACG 1 cut(s) 25
SinI GGWCC 4 cut(s) 122, 158, 247, 256
SmiMI CAYNNNNRTG 1 cut(s) 2664
SmlI CTYRAG 5 cut(s) 754, 1730, 1847, 1853, 1967
SmoI CTYRAG 5 cut(s) 754, 1730, 1847, 1853, 1967
SphI GCATGC 2 cut(s) 548, 3065
Sse8387I CCTGCAGG 1 cut(s) 2016
SseBI AGGCCT 1 cut(s) 2010
SspI AATATT 1 cut(s) 2065
SspMI CTAG 7 cut(s) 81, 1010, 2703, 2859, 2883, 2930, 3075
SstI GAGCTC 1 cut(s) 1515
StuI AGGCCT 1 cut(s) 2010
StyD4I CCNGG 4 cut(s) 221, 2352, 3190, 3604
StyI CCWWGG 3 cut(s) 80, 243, 2736
TaiI ACGT 3 cut(s) 1059, 3594, 3653
TaqI TCGA 7 cut(s) 26, 74, 359, 513, 736, 1292, 1920
TaqII GACCGA 2 cut(s) 392, 2645
TatI WGTACW 1 cut(s) 2338
TauI GCSGC 6 cut(s) 13, 35, 60, 63, 66, 242
Tru1I TTAA 9 cut(s) 408, 755, 872, 1604, 2067, 2108, 2414, 2526, 2592
Tru9I TTAA 9 cut(s) 408, 755, 872, 1604, 2067, 2108, 2414, 2526, 2592
TscAI CASTG 4 cut(s) 503, 1314, 2370, 3133
TseFI GTSAC 5 cut(s) 1950, 2083, 3104, 3238, 3385
Tsp45I GTSAC 5 cut(s) 1950, 2083, 3104, 3238, 3385
TspGWI ACGGA 5 cut(s) 487, 1181, 1565, 1969, 3169
TspRI CASTG 4 cut(s) 503, 1314, 2370, 3133
Vha464I CTTAAG 1 cut(s) 754
VpaK11BI GGWCC 4 cut(s) 122, 158, 247, 256
VspI ATTAAT 1 cut(s) 2067
XagI CCTNNNNNAGG 1 cut(s) 2225
XapI RAATTY 7 cut(s) 466, 1088, 1476, 1756, 2333, 2924, 3407
XceI RCATGY 3 cut(s) 548, 1811, 3065
XcmI CCANNNNNNNNNTGG 1 cut(s) 2740
XmaJI CCTAGG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 3 cut(s) 682, 1500, 3312
XspI CTAG 7 cut(s) 81, 1010, 2703, 2859, 2883, 2930, 3075
Zsp2I ATGCAT 1 cut(s) 3063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.