Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027081.1

Orthogroup ID

OG0001591

Physical Location & Seq

Genomic Coordinates Reverse (-)

971 .. 2087

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgagtaatgagcagatagccttatctgaaagagccctacctgagcatgctcaaatggtccatgattttgagtcatggagaagagatcttgagattgatatgcagaattggcaggataagatgggagtagctgataagcaaagaaaagagctattatctgaaaggaatatgaatgaaaaggaaagggaagcgcttgcactgcagcagaaggagctggaagcgaaccaacttgaaacgcgagaagacatagatcagcttgacaagcttagcaagaagatcaagtgccagagggaacagctgattggggaaagaggaaaggaatccaactttcttgctgatgaggaagcaagaggtcctagcagtcatgaagagcctcagccatctcttaggagatgtaatgactcggccaatgctcaagcagtcgtaactgataacaactctaaggaggcggatgatgggtatgctccatcaattgacgatcacagtttcattgacagccatgagcaagacattccagaagattctgagcagtcagagctgaaaagtggccgacgaaaaccagctagtggacgcaaatctagattgtctagaacacactcagtgaaggcagttgttgaagacgcaaagaaatttttaggagaaactccagaagcatcaaatgcaagtttgcttaatgagagtagttacataaatgaaggtgattccagttttacgagcatcagtcggaaacgaacccgccctgagagctccaggatagaaagcgagcaagatgattgtgatagcgaagggcgttctggtagtgtcacagctggtgggcataggaagaggcgccaatccgttgcttcagcagtgcaaacccctggagaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

32.68

Weight (kDa)

5.08

Isoelectric Point (pI)

62.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13220 AT1G13220 AT1G13220
fragaria_vesca	FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241
malus_domestica	MD13G1048500.v1.1 MD16G1049800.v1.1
prunus_persica	Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1
pyrus_communis	pycom13g04280 pycom16g04330 pycom16g04350
rosa_chinensis	RchiOBHm_Chr4g0436091 RchiOBHm_Chr4g0436101 RchiOBHm_Chr7g0226101
rosa_laevigata	RLG00000001768 RLG00000006539
rosa_multiflora	Rmu_co7990620.1_g000001 Rmu_co8047562.1_g000001 Rmu_co8303205.1_g000001 Rmu_sc0000456.1_g000001 Rmu_sc0006301.1_g000004 Rmu_sc0027081.1_g000001 Rmu_sc0043134.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233250 Rroxscaffold_5G00377210
rosa_rugosa	Rorug04G0291800 Rorug04G0291900 Rorug04G0292000 Rorug07G0234900 Rorug07G0235000
rosa_samantha	Rh4AG346000 Rh4BG355000 Rh4BG355100 Rh4CG369500 Rh4CG369600 Rh4CG369700 Rh4DG348700 Rh7AG368200 Rh7BG369100 Rh7CG386500 Rh7DG380100
rosa_wichuraiana	Rw2G017160 Rw4G030240 Rw7G031950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	828
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccII	CGCG	1 cut(s)	238
AciI	CCGC	2 cut(s)	449, 736
AcoI	YGGCCR	2 cut(s)	405, 547
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	1 cut(s)	828
AcyI	GRCGYC	1 cut(s)	829
AdeI	CACNNNGTG	1 cut(s)	601
AfeI	AGCGCT	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	2 cut(s)	233, 617
AjnI	CCWGG	2 cut(s)	749, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
Alw21I	GWGCWC	1 cut(s)	749
Aor51HI	AGCGCT	1 cut(s)	192
AoxI	GGCC	2 cut(s)	405, 547
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	629
AspLEI	GCGC	2 cut(s)	193, 831
AspS9I	GGNCC	2 cut(s)	58, 353
AsuHPI	GGTGA	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	58, 353
BanI	GGYRCC	1 cut(s)	828
BanII	GRGCYC	2 cut(s)	37, 749
BbsI	GAAGAC	2 cut(s)	249, 624
Bbv12I	GWGCWC	1 cut(s)	749
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	4 cut(s)	115, 388, 449, 475
BciT130I	CCWGG	2 cut(s)	751, 861
BfaI	CTAG	4 cut(s)	357, 564, 579, 588
BfmI	CTRYAG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	194, 832
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	751, 861
Bme18I	GGWCC	2 cut(s)	58, 353
BmgT120I	GGNCC	2 cut(s)	58, 353
BmiI	GGNNCC	1 cut(s)	830
BmrFI	CCNGG	2 cut(s)	751, 861
BmsI	GCATC	2 cut(s)	662, 726
BpiI	GAAGAC	2 cut(s)	249, 624
BpmI	CTGGAG	2 cut(s)	630, 733
Bpu10I	CCTNAGC	2 cut(s)	42, 375
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	2 cut(s)	110, 399
BsaHI	GRCGYC	1 cut(s)	829
BsaJI	CCNNGG	1 cut(s)	859
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	751, 861
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	5 cut(s)	33, 389, 516, 612, 732
BseNI	ACTGG	1 cut(s)	705
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	407, 549
BshNI	GGYRCC	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	566
BsnI	GGCC	2 cut(s)	407, 549
Bsp1286I	GDGCHC	2 cut(s)	37, 749
Bsp143I	GATC	4 cut(s)	85, 250, 276, 478
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	2 cut(s)	449, 736
BspANI	GGCC	2 cut(s)	407, 549
BspCNI	CTCAG	5 cut(s)	34, 388, 517, 611, 733
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	830
BspMAI	CTGCAG	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	828
BsrI	ACTGG	1 cut(s)	705
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	4 cut(s)	85, 250, 276, 478
BssNI	GRCGYC	1 cut(s)	829
Bst2UI	CCWGG	2 cut(s)	751, 861
Bst4CI	ACNGT	2 cut(s)	485, 870
Bst6I	CTCTTC	3 cut(s)	76, 363, 818
BstACI	GRCGYC	1 cut(s)	829
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	3 cut(s)	48, 195, 764
BstDEI	CTNAG	8 cut(s)	42, 266, 375, 386, 441, 525, 598, 741
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	2 cut(s)	194, 832
BstHHI	GCGC	2 cut(s)	193, 831
BstKTI	GATC	4 cut(s)	88, 253, 279, 481
BstMBI	GATC	4 cut(s)	85, 250, 276, 478
BstMWI	GCNNNNNNNGC	7 cut(s)	109, 199, 211, 262, 535, 659, 744
BstNI	CCWGG	2 cut(s)	751, 861
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	749, 859
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	249, 624
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	407, 549
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	2 cut(s)	197, 855
BtsIMutI	CAGTG	3 cut(s)	197, 606, 855
Cac8I	GCNNGC	3 cut(s)	48, 195, 764
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	2 cut(s)	193, 831
Cfr13I	GGNCC	2 cut(s)	58, 353
CseI	GACGC	2 cut(s)	579, 629
CviAII	CATG	5 cut(s)	47, 62, 75, 365, 500
DdeI	CTNAG	8 cut(s)	42, 266, 375, 386, 441, 525, 598, 741
DinI	GGCGCC	1 cut(s)	830
DpnI	GATC	4 cut(s)	87, 252, 278, 480
DpnII	GATC	4 cut(s)	85, 250, 276, 478
DraIII	CACNNNGTG	1 cut(s)	601
EaeI	YGGCCR	2 cut(s)	405, 547
Eam1104I	CTCTTC	3 cut(s)	76, 363, 818
EarI	CTCTTC	3 cut(s)	76, 363, 818
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	37, 749
Eco47I	GGWCC	2 cut(s)	58, 353
Eco47III	AGCGCT	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	828
EcoICRI	GAGCTC	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	749, 859
EcoT38I	GRGCYC	2 cut(s)	37, 749
EgeI	GGCGCC	1 cut(s)	830
EheI	GGCGCC	1 cut(s)	830
FaeI	CATG	5 cut(s)	50, 65, 78, 368, 503
FatI	CATG	5 cut(s)	46, 61, 74, 364, 499
FauI	CCCGC	1 cut(s)	743
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	2 cut(s)	37, 749
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	4 cut(s)	357, 564, 579, 588
GlaI	GCGC	2 cut(s)	192, 830
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	2 cut(s)	630, 733
HaeII	RGCGCY	2 cut(s)	194, 832
HaeIII	GGCC	2 cut(s)	407, 549
HgaI	GACGC	2 cut(s)	579, 629
HhaI	GCGC	2 cut(s)	193, 831
Hin1I	GRCGYC	1 cut(s)	829
Hin1II	CATG	5 cut(s)	50, 65, 78, 368, 503
Hin6I	GCGC	2 cut(s)	191, 829
HinP1I	GCGC	2 cut(s)	191, 829
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	5 cut(s)	71, 320, 401, 521, 701
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	5 cut(s)	28, 160, 526, 535, 726
Hpy188III	TCNNGA	6 cut(s)	89, 365, 515, 579, 588, 647
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	4 cut(s)	202, 598, 689, 779
HpyCH4III	ACNGT	2 cut(s)	485, 870
HpyCH4V	TGCA	5 cut(s)	103, 197, 202, 662, 853
HpyF10VI	GCNNNNNNNGC	7 cut(s)	109, 199, 211, 262, 535, 659, 744
HpyF3I	CTNAG	8 cut(s)	42, 266, 375, 386, 441, 525, 598, 741
Hsp92I	GRCGYC	1 cut(s)	829
Hsp92II	CATG	5 cut(s)	50, 65, 78, 368, 503
HspAI	GCGC	2 cut(s)	191, 829
KasI	GGCGCC	1 cut(s)	828
Kzo9I	GATC	4 cut(s)	85, 250, 276, 478
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	3 cut(s)	211, 469, 752
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	662, 726
MaeI	CTAG	4 cut(s)	357, 564, 579, 588
MaeIII	GTNAC	3 cut(s)	424, 683, 802
MalI	GATC	4 cut(s)	87, 252, 278, 480
MboI	GATC	4 cut(s)	85, 250, 276, 478
MboII	GAAGA	7 cut(s)	93, 254, 286, 380, 530, 629, 835
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	37, 749
MluCI	AATT	3 cut(s)	106, 471, 629
Mly113I	GGCGCC	1 cut(s)	829
MlyI	GAGTC	2 cut(s)	80, 395
MmeI	TCCRAC	2 cut(s)	348, 704
MnlI	CCTC	7 cut(s)	282, 305, 334, 344, 384, 439, 819
MseI	TTAA	1 cut(s)	672
MspA1I	CMGCKG	2 cut(s)	298, 809
MspR9I	CCNGG	2 cut(s)	751, 861
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	2 cut(s)	751, 861
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	7 cut(s)	109, 199, 211, 262, 535, 659, 744
NarI	GGCGCC	1 cut(s)	829
NdeII	GATC	4 cut(s)	85, 250, 276, 478
NlaIII	CATG	5 cut(s)	50, 65, 78, 368, 503
NlaIV	GGNNCC	1 cut(s)	830
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	802
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PagI	TCATGA	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	320, 521, 701
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	749
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	2 cut(s)	79, 395
PluTI	GGCGCC	1 cut(s)	832
PpsI	GAGTC	2 cut(s)	79, 395
PpuMI	RGGWCCY	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	749, 859
PspGI	CCWGG	2 cut(s)	749, 859
PspN4I	GGNNCC	1 cut(s)	830
PspPI	GGNCC	2 cut(s)	58, 353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	2 cut(s)	298, 809
SacI	GAGCTC	1 cut(s)	749
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	4 cut(s)	85, 250, 276, 478
Sau96I	GGNCC	2 cut(s)	58, 353
SchI	GAGTC	2 cut(s)	80, 395
ScrFI	CCNGG	2 cut(s)	751, 861
SduI	GDGCHC	2 cut(s)	37, 749
SfaNI	GCATC	2 cut(s)	662, 726
SfcI	CTRYAG	1 cut(s)	200
SfoI	GGCGCC	1 cut(s)	830
SinI	GGWCC	2 cut(s)	58, 353
SmlI	CTYRAG	2 cut(s)	89, 414
SmoI	CTYRAG	2 cut(s)	89, 414
SphI	GCATGC	1 cut(s)	50
Sse9I	AATT	3 cut(s)	106, 471, 629
SsiI	CCGC	2 cut(s)	449, 736
SspDI	GGCGCC	1 cut(s)	828
SspMI	CTAG	4 cut(s)	357, 564, 579, 588
SstI	GAGCTC	1 cut(s)	749
StyD4I	CCNGG	2 cut(s)	749, 859
TaaI	ACNGT	2 cut(s)	485, 870
TasI	AATT	3 cut(s)	106, 471, 629
TfiI	GAWTC	3 cut(s)	320, 521, 701
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	204, 606, 855
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	5 cut(s)	185, 189, 381, 478, 708
TspGWI	ACGGA	1 cut(s)	826
TspRI	CASTG	3 cut(s)	204, 606, 855
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	58, 353
XapI	RAATTY	1 cut(s)	629
XbaI	TCTAGA	2 cut(s)	578, 587
XceI	RCATGY	1 cut(s)	50
XspI	CTAG	4 cut(s)	357, 564, 579, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.