Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8047562.1

Orthogroup ID

OG0001591

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 384

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8047562.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgttcacgccgctgaggaaggcgccggcgacgccgaggaccaccgacaagggcaaggccgtggcgtacgtcgacggtcctccgccgccacttggttctctgagcgaaatcagaagcggcggcggtggggccaaaacgttgccggatttggacaatgccgattggaggcggtttaaggaggttgggctgctagatgaggcggccatggagcgccgggaccgccaagaactcgccaataaggtcgctaggcttgagtctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.49

Weight (kDa)

8.07

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13220 AT1G13220 AT1G13220
fragaria_vesca	FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241
malus_domestica	MD13G1048500.v1.1 MD16G1049800.v1.1
prunus_persica	Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1
pyrus_communis	pycom13g04280 pycom16g04330 pycom16g04350
rosa_chinensis	RchiOBHm_Chr4g0436091 RchiOBHm_Chr4g0436101 RchiOBHm_Chr7g0226101
rosa_laevigata	RLG00000001768 RLG00000006539
rosa_multiflora	Rmu_co7990620.1_g000001 Rmu_co8047562.1_g000001 Rmu_co8303205.1_g000001 Rmu_sc0000456.1_g000001 Rmu_sc0006301.1_g000004 Rmu_sc0027081.1_g000001 Rmu_sc0043134.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233250 Rroxscaffold_5G00377210
rosa_rugosa	Rorug04G0291800 Rorug04G0291900 Rorug04G0292000 Rorug07G0234900 Rorug07G0235000
rosa_samantha	Rh4AG346000 Rh4BG355000 Rh4BG355100 Rh4CG369500 Rh4CG369600 Rh4CG369700 Rh4DG348700 Rh7AG368200 Rh7BG369100 Rh7CG386500 Rh7DG380100
rosa_wichuraiana	Rw2G017160 Rw4G030240 Rw7G031950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	9 cut(s)	11, 83, 86, 117, 120, 123, 169, 200, 220
AclI	AACGTT	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	201
AcyI	GRCGYC	2 cut(s)	23, 32
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	92, 165
AoxI	GGCC	3 cut(s)	57, 129, 201
ApeKI	GCWGC	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	25, 213
AspS9I	GGNCC	4 cut(s)	39, 77, 129, 217
AsuC2I	CCSGG	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	39, 77, 217
BanI	GGYRCC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	174
BceAI	ACGGC	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	2 cut(s)	191, 246
BfoI	RGCGCY	2 cut(s)	26, 214
BisI	GCNGC	6 cut(s)	11, 86, 118, 121, 188, 201
BlsI	GCNGC	6 cut(s)	12, 87, 119, 122, 189, 202
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	3 cut(s)	39, 77, 217
BmgT120I	GGNCC	4 cut(s)	39, 77, 129, 217
BmiI	GGNNCC	3 cut(s)	24, 130, 218
BmrFI	CCNGG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	215
BsaHI	GRCGYC	2 cut(s)	23, 32
BsaJI	CCNNGG	3 cut(s)	35, 60, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 165
Bse118I	RCCGGY	1 cut(s)	25
BseDI	CCNNGG	3 cut(s)	35, 60, 204
BseLI	CCNNNNNNNGG	2 cut(s)	92, 165
BseMII	CTCAG	3 cut(s)	5, 92, 249
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	3 cut(s)	59, 131, 203
BshNI	GGYRCC	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	26, 143, 214
BsiWI	CGTACG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	92, 165
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	59, 131, 203
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	9 cut(s)	11, 83, 86, 117, 120, 123, 169, 200, 220
BspANI	GGCC	3 cut(s)	59, 131, 203
BspCNI	CTCAG	3 cut(s)	6, 93, 250
BspLI	GGNNCC	3 cut(s)	24, 130, 218
BspT107I	GGYRCC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	3 cut(s)	35, 60, 204
BssNI	GRCGYC	2 cut(s)	23, 32
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	77
BstACI	GRCGYC	2 cut(s)	23, 32
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	14, 101, 258
BstDSI	CCRYGG	2 cut(s)	60, 204
BstH2I	RGCGCY	2 cut(s)	26, 214
BstHHI	GCGC	2 cut(s)	25, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 219
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	59, 131, 203
BtgI	CCRYGG	2 cut(s)	60, 204
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	2 cut(s)	25, 213
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	39, 77, 129, 217
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	5 cut(s)	59, 131, 187, 203, 250
CviKI_1	RGCY	5 cut(s)	59, 131, 187, 203, 250
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	14, 101, 258
DinI	GGCGCC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	3 cut(s)	39, 77, 217
EcoT14I	CCWWGG	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	208
FaiI	YATR	1 cut(s)	206
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	6 cut(s)	11, 86, 118, 121, 188, 201
Fsp4HI	GCNGC	6 cut(s)	11, 86, 118, 121, 188, 201
FspBI	CTAG	2 cut(s)	191, 246
GlaI	GCGC	2 cut(s)	24, 212
GluI	GCNGC	6 cut(s)	11, 86, 118, 121, 188, 201
HaeII	RGCGCY	2 cut(s)	26, 214
HaeIII	GGCC	3 cut(s)	59, 131, 203
HapII	CCGG	3 cut(s)	26, 143, 214
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	25, 213
Hin1I	GRCGYC	2 cut(s)	23, 32
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	2 cut(s)	23, 211
HinP1I	GCGC	2 cut(s)	23, 211
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	3 cut(s)	26, 143, 214
Hpy166II	GTNNAC	2 cut(s)	6, 73
Hpy188I	TCNGA	3 cut(s)	102, 113, 259
Hpy8I	GTNNAC	2 cut(s)	6, 73
Hpy99I	CGWCG	3 cut(s)	34, 74, 77
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	69, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 219
HpyF3I	CTNAG	3 cut(s)	14, 101, 258
HpySE526I	ACGT	2 cut(s)	69, 137
Hsp92I	GRCGYC	2 cut(s)	23, 32
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	2 cut(s)	23, 211
KasI	GGCGCC	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	3 cut(s)	39, 156, 227
Lsp1109I	GCAGC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	191, 246
MaeII	ACGT	2 cut(s)	69, 137
Mly113I	GGCGCC	1 cut(s)	23
MnlI	CCTC	6 cut(s)	9, 30, 90, 159, 172, 190
MreI	CGCCGGCG	1 cut(s)	25
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	3 cut(s)	26, 143, 214
MspR9I	CCNGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	31, 219
NaeI	GCCGGC	1 cut(s)	27
NarI	GGCGCC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	204
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	3 cut(s)	24, 130, 218
NmeAIII	GCCGAG	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	27
Pfl23II	CGTACG	1 cut(s)	66
PkrI	GCNGC	6 cut(s)	12, 87, 119, 122, 189, 202
PluTI	GGCGCC	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	137
PspLI	CGTACG	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	24, 130, 218
PspPI	GGNCC	4 cut(s)	39, 77, 129, 217
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	6 cut(s)	11, 86, 118, 121, 188, 201
Sau96I	GGNCC	4 cut(s)	39, 77, 129, 217
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	4 cut(s)	72, 140, 183, 243
SfoI	GGCGCC	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	25
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	3 cut(s)	39, 77, 217
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SsiI	CCGC	9 cut(s)	11, 83, 86, 117, 120, 123, 169, 200, 220
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	191, 246
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	2 cut(s)	72, 140
TaqI	TCGA	1 cut(s)	72
TauI	GCSGC	5 cut(s)	13, 88, 120, 123, 203
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	187
VpaK11BI	GGWCC	3 cut(s)	39, 77, 217
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	2 cut(s)	191, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.