Rh4BG355100

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001591
Physical Location & Seq
Forward (+)
51486745 .. 51488629
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG355100.1

Sequence Viewer

Length: 414 bp
ATGGAGGCGGATGATGGACACCGCAAGACTGCAGGCACATTGGCAGCAGCATCAGCAGCGCCTCACCTGAAAAGTAGAAGGAAGGAAGAATCAAATCCTGAATCTGTTGGTGTAGACCTGATTCAGGTCACAACATTAAAAACTGTGGAGTCAACAGAGGAGCGAGTTGTGAGGTTTGCAACACCAGAACCACAAGACACTGTTAATGGCAATGCTGATGCTGATGCAACGAAGTTGGTTGAAGAGAGAGAGTTGAGTACGGAAGTGAATGGCACAGAATCTAGTGGTGGCAACAGCACAGGTGGGGAGAGTGACAACAGCACAGGTGATGAGAGCGGCGATGACTATGATGATGAGGATCATCCTGGTCAAGCGTCAATAGGGAAGAAGATCTGGACCTTCTTCAGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.54

Weight (kDa)

4.37

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 336
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 8, 22, 336
AclWI GGATC 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 388
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 364
AlwI GGATC 1 cut(s) 366
ApeKI GCWGC 3 cut(s) 44, 47, 56
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 56, 338
AvaII GGWCC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 56, 59, 68
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 366
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 62
BglII AGATCT 1 cut(s) 390
BisI GCNGC 4 cut(s) 45, 48, 57, 337
BlsI GCNGC 4 cut(s) 46, 49, 58, 338
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 59, 208, 214
BsaBI GATNNNNATC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 16, 361
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 56, 59, 68
BslI CCNNNNNNNGG 1 cut(s) 124
Bsp143I GATC 2 cut(s) 358, 390
BspACI CCGC 3 cut(s) 8, 22, 336
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 217
BssMI GATC 2 cut(s) 358, 390
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 145, 202
Bst6I CTCTTC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 16, 361
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 361, 393
BstMBI GATC 2 cut(s) 358, 390
BstMWI GCNNNNNNNGC 2 cut(s) 53, 56
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 3 cut(s) 56, 59, 68
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 16, 361
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 396
CseI GACGC 1 cut(s) 363
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 411
CviQI GTAC 1 cut(s) 258
DpnI GATC 2 cut(s) 360, 392
DpnII GATC 2 cut(s) 358, 390
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 388
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 1 cut(s) 414
FaiI YATR 2 cut(s) 348, 412
FatI CATG 1 cut(s) 410
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 45, 48, 57, 337
FokI GGATG 2 cut(s) 23, 348
Fsp4HI GCNGC 4 cut(s) 45, 48, 57, 337
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 60
GluI GCNGC 4 cut(s) 45, 48, 57, 337
HaeII RGCGCY 1 cut(s) 62
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 414
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 5 cut(s) 89, 101, 121, 149, 278
HphI GGTGA 2 cut(s) 56, 338
Hpy166II GTNNAC 2 cut(s) 115, 153
Hpy188III TCNNGA 2 cut(s) 98, 394
Hpy8I GTNNAC 2 cut(s) 115, 153
HpyAV CCTTC 3 cut(s) 72, 76, 409
HpyCH4III ACNGT 2 cut(s) 145, 202
HpyCH4V TGCA 3 cut(s) 32, 179, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 56
Hsp92II CATG 1 cut(s) 414
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 358, 390
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 3 cut(s) 56, 59, 68
LweI GCATC 3 cut(s) 59, 208, 214
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 127, 311
MalI GATC 2 cut(s) 360, 392
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 358, 390
MboII GAAGA 5 cut(s) 98, 254, 394, 397, 400
MflI RGATCY 1 cut(s) 390
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 4 cut(s) 72, 151, 165, 349
MseI TTAA 2 cut(s) 137, 204
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 53, 56
NdeII GATC 2 cut(s) 358, 390
NlaIII CATG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 127, 311
PfeI GAWTC 4 cut(s) 89, 101, 121, 278
PkrI GCNGC 4 cut(s) 46, 49, 58, 338
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 1 cut(s) 396
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 137, 204
SatI GCNGC 4 cut(s) 45, 48, 57, 337
Sau3AI GATC 2 cut(s) 358, 390
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 366
SetI ASST 7 cut(s) 69, 120, 129, 176, 304, 328, 401
SfaNI GCATC 3 cut(s) 59, 208, 214
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 396
SsiI CCGC 3 cut(s) 8, 22, 336
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 145, 202
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 4 cut(s) 89, 101, 121, 278
Tru1I TTAA 2 cut(s) 137, 204
Tru9I TTAA 2 cut(s) 137, 204
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 127, 311
TseI GCWGC 3 cut(s) 44, 47, 56
Tsp45I GTSAC 2 cut(s) 127, 311
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.