Rmu_sc0000456.1_g000001

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000456.1
OG0001591
Physical Location & Seq
Reverse (-)
123 .. 520
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000456.1_g000001.1.cds

Sequence Viewer

Length: 297 bp
ctgattcaggtcacaacgttaaaaactgtggagtcaacagaggaacgagttgtgaggtttgcaacaccagaaccacaagacactgttaatggcaatgctgatgctgatgaaacgaagttggttgaagagagagagttgagtacggaagtgaatggcacagaatctagtggtggcaacagcacaggcggggagagtgacaacagcacaggtgatgagagcggcgatgactatgatgatgaggatcatcctggtcaagcgtcaatagggaagaagatctggaccttcttcagcacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.53

Weight (kDa)

4.05

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 2 cut(s) 186, 219
AclI AACGTT 1 cut(s) 17
AclWI GGATC 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 1 cut(s) 247
AlwI GGATC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 273
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 240
BseMI GCAATG 1 cut(s) 100
Bsp143I GATC 2 cut(s) 241, 273
BspACI CCGC 2 cut(s) 186, 219
BspPI GGATC 1 cut(s) 249
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 2 cut(s) 241, 273
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 28, 85
Bst6I CTCTTC 1 cut(s) 120
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 244, 276
BstMBI GATC 2 cut(s) 241, 273
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 141
CviAII CATG 1 cut(s) 294
CviQI GTAC 1 cut(s) 141
DpnI GATC 2 cut(s) 243, 275
DpnII GATC 2 cut(s) 241, 273
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 1 cut(s) 297
FaiI YATR 2 cut(s) 231, 295
FatI CATG 1 cut(s) 293
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 165
GluI GCNGC 1 cut(s) 220
HgaI GACGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 297
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 3 cut(s) 4, 32, 161
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 28, 85
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 1 cut(s) 297
Kzo9I GATC 2 cut(s) 241, 273
LpnPI CCDG 6 cut(s) 81, 168, 192, 234, 261, 262
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 10, 194
MalI GATC 2 cut(s) 243, 275
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 241, 273
MboII GAAGA 4 cut(s) 137, 277, 280, 283
MflI RGATCY 1 cut(s) 273
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 34, 48, 232
MseI TTAA 2 cut(s) 20, 87
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
NdeII GATC 2 cut(s) 241, 273
NlaIII CATG 1 cut(s) 297
NmuCI GTSAC 2 cut(s) 10, 194
PfeI GAWTC 2 cut(s) 4, 161
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp1406I AACGTT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 20, 87
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 2 cut(s) 241, 273
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 249
SetI ASST 5 cut(s) 12, 20, 59, 211, 284
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 279
SsiI CCGC 2 cut(s) 186, 219
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 28, 85
TaiI ACGT 1 cut(s) 20
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 2 cut(s) 4, 161
Tru1I TTAA 2 cut(s) 20, 87
Tru9I TTAA 2 cut(s) 20, 87
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 10, 194
Tsp45I GTSAC 2 cut(s) 10, 194
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 279
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.