RchiOBHm_Chr4g0436091

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001591
Physical Location & Seq
Forward (+)
59463405 .. 59464307
903 bp
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UTR
Exon/CDS
Intron
PRQ40446

Sequence Viewer

Length: 174 bp
ATGAATGAAAAGGAAAGGGAAGCGCTTGCACTGCAGCAGAAGGAGCTGGAAGCGAACCAACTTGAAACGCGAGAAGACATAGATCAGCTTGACAAGCTTAGCAAGAAGATCAAGTGCCAGAGGGAACAGCTGATTGGGGAAAGCGGTCGCTTTCTTGCCTTTGTACCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.66

Weight (kDa)

5.08

Isoelectric Point (pI)

21.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 144
AfaI GTAC 1 cut(s) 165
AfeI AGCGCT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 65
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 4 cut(s) 46, 88, 97, 130
AluI AGCT 4 cut(s) 46, 88, 97, 130
Aor51HI AGCGCT 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 1 cut(s) 35
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 98
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 148
Bsp143I GATC 2 cut(s) 82, 108
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 1 cut(s) 144
BspFNI CGCG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 36
BssMI GATC 2 cut(s) 82, 108
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 98
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 85, 111
BstMBI GATC 2 cut(s) 82, 108
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 31, 43, 94
BstSFI CTRYAG 1 cut(s) 32
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 164
CviAII CATG 1 cut(s) 168
CviJI RGCY 4 cut(s) 46, 88, 97, 130
CviKI_1 RGCY 4 cut(s) 46, 88, 97, 130
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 98
DpnI GATC 2 cut(s) 84, 110
DpnII GATC 2 cut(s) 82, 108
Eco47III AGCGCT 1 cut(s) 24
FaeI CATG 1 cut(s) 171
FaiI YATR 2 cut(s) 80, 169
FatI CATG 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 26
HhaI GCGC 1 cut(s) 25
Hin1II CATG 1 cut(s) 171
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 29, 34
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 43, 94
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 1 cut(s) 171
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 82, 108
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 32, 131
Lsp1109I GCAGC 1 cut(s) 46
MalI GATC 2 cut(s) 84, 110
MboI GATC 2 cut(s) 82, 108
MboII GAAGA 2 cut(s) 86, 118
MnlI CCTC 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 130
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 31, 43, 94
NdeII GATC 2 cut(s) 82, 108
NlaIII CATG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 36
PstI CTGCAG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 82, 108
SetI ASST 4 cut(s) 48, 90, 99, 132
SfcI CTRYAG 1 cut(s) 32
SsiI CCGC 1 cut(s) 144
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 17, 21
TspRI CASTG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.