Rh4CG369700

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001591
Physical Location & Seq
Forward (+)
62388596 .. 62390160
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG369700.1

Sequence Viewer

Length: 429 bp
ATGATTGTGATAGCGAAGGACGTTCTGGTAGTACACCGCAAGACTGCAGGCACATTGGCAGCAGCATCAGCAGCGCCTCACCTGAAAAGTAGAAGGAAGGAAGAATCAAATCCTGAATCTGTTGGTGTAGACCTGATTCAGGTCACAACATTAAAAACTGTGGAGTCAACAGAGGAGCGAGTTGTGAGGTTTGCAACACCAGAACCACAAGACACTGTTAATGGCAATGCTGATGCTGATGCAACGAAGTTGGTTGAAGAGAGAGAGTTGAGTACGGAAGTGAATGGCACAGAATCTAGTGGTGGCAACAGCACAGGTGGGGAGAGTGACAACAGCACAGGTGATGAGAGCGGCGATGACTATGATGATGAGGATCATCCTGGTCAAGCGTCAATAGGGAAGAAGATCTGGACCTTCTTCAGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.11

Weight (kDa)

4.51

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 351
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 37, 351
AclWI GGATC 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 2 cut(s) 33, 274
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 257
AjnI CCWGG 1 cut(s) 379
AlwI GGATC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 59, 62, 71
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 71, 353
AvaII GGWCC 1 cut(s) 411
BbvI GCAGC 3 cut(s) 71, 74, 83
BciT130I CCWGG 1 cut(s) 381
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 77
BglII AGATCT 1 cut(s) 405
BisI GCNGC 4 cut(s) 60, 63, 72, 352
BlsI GCNGC 4 cut(s) 61, 64, 73, 353
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 74, 223, 229
BsaBI GATNNNNATC 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 376
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 71, 74, 83
BslI CCNNNNNNNGG 1 cut(s) 139
Bsp143I GATC 2 cut(s) 373, 405
BspACI CCGC 2 cut(s) 37, 351
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 1 cut(s) 381
BsrBI CCGCTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 232
BssMI GATC 2 cut(s) 373, 405
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 160, 217
Bst6I CTCTTC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 49
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 376, 408
BstMBI GATC 2 cut(s) 373, 405
BstMWI GCNNNNNNNGC 2 cut(s) 68, 71
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 71, 74, 83
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 411
CseI GACGC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 32, 273
CviAII CATG 1 cut(s) 426
CviQI GTAC 2 cut(s) 32, 273
DpnI GATC 2 cut(s) 375, 407
DpnII GATC 2 cut(s) 373, 405
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 403
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 379
FaeI CATG 1 cut(s) 429
FaiI YATR 2 cut(s) 363, 427
FatI CATG 1 cut(s) 425
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 60, 63, 72, 352
FokI GGATG 1 cut(s) 363
Fsp4HI GCNGC 4 cut(s) 60, 63, 72, 352
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 75
GluI GCNGC 4 cut(s) 60, 63, 72, 352
HaeII RGCGCY 1 cut(s) 77
HgaI GACGC 1 cut(s) 378
HhaI GCGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 429
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 5 cut(s) 104, 116, 136, 164, 293
HphI GGTGA 2 cut(s) 71, 353
Hpy166II GTNNAC 3 cut(s) 34, 130, 168
Hpy188III TCNNGA 2 cut(s) 113, 409
Hpy8I GTNNAC 3 cut(s) 34, 130, 168
HpyAV CCTTC 4 cut(s) 10, 87, 91, 424
HpyCH4III ACNGT 2 cut(s) 160, 217
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 47, 194, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 71
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 429
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 373, 405
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 3 cut(s) 71, 74, 83
LweI GCATC 3 cut(s) 74, 223, 229
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 142, 326
MalI GATC 2 cut(s) 375, 407
MbiI CCGCTC 1 cut(s) 351
MboI GATC 2 cut(s) 373, 405
MboII GAAGA 5 cut(s) 113, 269, 409, 412, 415
MflI RGATCY 1 cut(s) 405
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 4 cut(s) 87, 166, 180, 364
MseI TTAA 2 cut(s) 152, 219
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 68, 71
NdeII GATC 2 cut(s) 373, 405
NlaIII CATG 1 cut(s) 429
NmuCI GTSAC 2 cut(s) 142, 326
PfeI GAWTC 4 cut(s) 104, 116, 136, 293
PkrI GCNGC 4 cut(s) 61, 64, 73, 353
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspPI GGNCC 1 cut(s) 411
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 405
RsaI GTAC 2 cut(s) 33, 274
RsaNI GTAC 2 cut(s) 32, 273
SaqAI TTAA 2 cut(s) 152, 219
SatI GCNGC 4 cut(s) 60, 63, 72, 352
Sau3AI GATC 2 cut(s) 373, 405
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 381
SetI ASST 8 cut(s) 24, 84, 135, 144, 191, 319, 343, 416
SfaNI GCATC 3 cut(s) 74, 223, 229
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 411
SsiI CCGC 2 cut(s) 37, 351
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 160, 217
TaiI ACGT 1 cut(s) 24
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 4 cut(s) 104, 116, 136, 293
Tru1I TTAA 2 cut(s) 152, 219
Tru9I TTAA 2 cut(s) 152, 219
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 142, 326
TseI GCWGC 3 cut(s) 59, 62, 71
Tsp45I GTSAC 2 cut(s) 142, 326
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 411
XagI CCTNNNNNAGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.