Rh4DG348700

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001591
Physical Location & Seq
Forward (+)
57018531 .. 57021055
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG348700.1

Sequence Viewer

Length: 867 bp
ATGAGTAATGAGCAGATAGCCTTATCTGAAAGGGCCCTATCTGAGCATGCTCAAATGGTCCAAGATTTTGAGTCACGGAGAAGAGATCTTGAGATTGATATGCAGAATTGGCAGGATAAGATGGGAGTAGCTGATAAGCAAAGAAAAGAGCTATTATCTGAAAGGAATATGAATGAAAAGGAAAGGGAAGCGCTTGCACTGCAGCAGAAGGAGCTGGAAGTGAACCAACTTGAAACGCGAGAAGACATAGATCAGCTTGACAAGCTTAGTAAGAAGATCAAGTGCCAGAGGGAACAGCTGATTGGGGAAAGAGGAAAGGAATCCAACTTTCTTGCTGATGAGGAAGCAAGAGGTCCTAGCAGTCATGAAGAGCCTCAGCCATCTCTTAGGAGATGTAATGACTCGGCCAATGCTCAAGCAGTCGTAACTGATAACAACTCTAAGGAGGCGGATGATGGGTATGCTCCATCAATTGAGGATCACAGTTTCATTGACAGCCATGAGCAAGACATTCCAGAAGATTCTGAGCGACACCACAAGACTGCAGGCACATTGGCAGCAGCATCAGCAGCGCCTCACCTGAAAAGTAGAAGGAAGGAAGAATCAAATCCTGAATCTGTTGGTGTAGACCTGATTCAGGTCACAACATTAAAAACTGTGGAGTCAACAGAGGAGCGAGTTGTGAGGTTTGCAACACCAGAACCACAAGACACTGTTAATGGCAATGCTGATGCTGATGCTGATGAAACGAAGTTGGTTGAAGAGAGAGAGTTGAGTACGGAAGTGAATGGCACAGAATCTAGTGGTGGCAACAGCACTGGCGGGGAGAGTGACAACAGCACAGGTGATGAGAGCGGTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.08

Weight (kDa)

4.54

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 855
AccI GTMKAC 1 cut(s) 627
AccII CGCG 1 cut(s) 238
AciI CCGC 3 cut(s) 449, 822, 855
AclWI GGATC 1 cut(s) 486
AcoI YGGCCR 1 cut(s) 405
AfaI GTAC 1 cut(s) 778
AfeI AGCGCT 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 2 cut(s) 233, 761
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 6 cut(s) 131, 151, 214, 256, 265, 298
AluI AGCT 6 cut(s) 131, 151, 214, 256, 265, 298
AlwI GGATC 1 cut(s) 486
Aor51HI AGCGCT 1 cut(s) 192
AoxI GGCC 2 cut(s) 33, 405
ApaI GGGCCC 1 cut(s) 37
ApeKI GCWGC 4 cut(s) 202, 557, 560, 569
AspLEI GCGC 2 cut(s) 193, 574
AspS9I GGNCC 4 cut(s) 33, 34, 58, 353
AsuHPI GGTGA 2 cut(s) 569, 857
AvaII GGWCC 2 cut(s) 58, 353
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 4 cut(s) 214, 569, 572, 581
BccI CCATC 4 cut(s) 115, 388, 449, 475
BfaI CTAG 2 cut(s) 357, 801
BfmI CTRYAG 2 cut(s) 200, 543
BfoI RGCGCY 2 cut(s) 194, 575
BglII AGATCT 1 cut(s) 85
BisI GCNGC 4 cut(s) 203, 558, 561, 570
BlsI GCNGC 4 cut(s) 204, 559, 562, 571
Bme18I GGWCC 2 cut(s) 58, 353
BmgT120I GGNCC 4 cut(s) 33, 34, 58, 353
BmiI GGNNCC 1 cut(s) 35
BmsI GCATC 3 cut(s) 572, 721, 727
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 110, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 1 cut(s) 823
Bse3DI GCAATG 1 cut(s) 730
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 3 cut(s) 33, 389, 516
BseNI ACTGG 1 cut(s) 823
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 4 cut(s) 214, 569, 572, 581
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 35, 407
BslI CCNNNNNNNGG 1 cut(s) 637
BsnI GGCC 2 cut(s) 35, 407
Bsp120I GGGCCC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 4 cut(s) 85, 250, 276, 478
BspACI CCGC 3 cut(s) 449, 822, 855
BspANI GGCC 2 cut(s) 35, 407
BspCNI CTCAG 3 cut(s) 34, 388, 517
BspFNI CGCG 1 cut(s) 238
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 35
BspMAI CTGCAG 2 cut(s) 204, 547
BspPI GGATC 1 cut(s) 486
BspQI GCTCTTC 1 cut(s) 363
BsrBI CCGCTC 1 cut(s) 855
BsrDI GCAATG 1 cut(s) 730
BsrI ACTGG 1 cut(s) 823
BssMI GATC 4 cut(s) 85, 250, 276, 478
Bst4CI ACNGT 3 cut(s) 485, 658, 715
Bst6I CTCTTC 3 cut(s) 76, 363, 756
BstC8I GCNNGC 3 cut(s) 48, 195, 547
BstDEI CTNAG 6 cut(s) 42, 266, 375, 386, 441, 525
BstENI CCTNNNNNAGG 1 cut(s) 635
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 238
BstH2I RGCGCY 2 cut(s) 194, 575
BstHHI GCGC 2 cut(s) 193, 574
BstKTI GATC 4 cut(s) 88, 253, 279, 481
BstMBI GATC 4 cut(s) 85, 250, 276, 478
BstMWI GCNNNNNNNGC 6 cut(s) 109, 199, 211, 262, 566, 569
BstNSI RCATGY 1 cut(s) 50
BstSFI CTRYAG 2 cut(s) 200, 543
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 4 cut(s) 214, 569, 572, 581
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 2 cut(s) 35, 407
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 3 cut(s) 197, 711, 816
Cac8I GCNNGC 3 cut(s) 48, 195, 547
CciI TCATGA 1 cut(s) 364
CfoI GCGC 2 cut(s) 193, 574
Cfr13I GGNCC 4 cut(s) 33, 34, 58, 353
Csp6I GTAC 1 cut(s) 777
CviAII CATG 3 cut(s) 47, 365, 500
CviQI GTAC 1 cut(s) 777
DdeI CTNAG 6 cut(s) 42, 266, 375, 386, 441, 525
DpnI GATC 4 cut(s) 87, 252, 278, 480
DpnII GATC 4 cut(s) 85, 250, 276, 478
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 3 cut(s) 76, 363, 756
EarI CTCTTC 3 cut(s) 76, 363, 756
EciI GGCGGA 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 58, 353
Eco47III AGCGCT 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 635
EcoO109I RGGNCCY 3 cut(s) 33, 34, 353
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 3 cut(s) 50, 368, 503
FaiI YATR 7 cut(s) 48, 101, 170, 248, 366, 462, 501
FatI CATG 3 cut(s) 46, 364, 499
FauI CCCGC 1 cut(s) 815
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 4 cut(s) 203, 558, 561, 570
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 4 cut(s) 203, 558, 561, 570
FspBI CTAG 2 cut(s) 357, 801
GlaI GCGC 2 cut(s) 192, 573
GluI GCNGC 4 cut(s) 203, 558, 561, 570
HaeII RGCGCY 2 cut(s) 194, 575
HaeIII GGCC 2 cut(s) 35, 407
HhaI GCGC 2 cut(s) 193, 574
Hin1II CATG 3 cut(s) 50, 368, 503
Hin6I GCGC 2 cut(s) 191, 572
HinP1I GCGC 2 cut(s) 191, 572
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 9 cut(s) 71, 320, 401, 521, 602, 614, 634, 662, 797
HphI GGTGA 2 cut(s) 569, 857
Hpy166II GTNNAC 3 cut(s) 223, 628, 666
Hpy188I TCNGA 4 cut(s) 28, 43, 160, 526
Hpy188III TCNNGA 4 cut(s) 89, 365, 515, 611
Hpy8I GTNNAC 3 cut(s) 223, 628, 666
HpyAV CCTTC 3 cut(s) 202, 585, 589
HpyCH4III ACNGT 3 cut(s) 485, 658, 715
HpyCH4V TGCA 5 cut(s) 103, 197, 202, 545, 692
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 199, 211, 262, 566, 569
HpyF3I CTNAG 6 cut(s) 42, 266, 375, 386, 441, 525
Hsp92II CATG 3 cut(s) 50, 368, 503
HspAI GCGC 2 cut(s) 191, 572
Kzo9I GATC 4 cut(s) 85, 250, 276, 478
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 3 cut(s) 211, 469, 673
Lsp1109I GCAGC 4 cut(s) 214, 569, 572, 581
LweI GCATC 3 cut(s) 572, 721, 727
MaeI CTAG 2 cut(s) 357, 801
MaeIII GTNAC 4 cut(s) 72, 424, 640, 830
MalI GATC 4 cut(s) 87, 252, 278, 480
MbiI CCGCTC 1 cut(s) 855
MboI GATC 4 cut(s) 85, 250, 276, 478
MboII GAAGA 7 cut(s) 93, 254, 286, 380, 530, 611, 773
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 106, 471
MlyI GAGTC 3 cut(s) 80, 395, 671
MmeI TCCRAC 1 cut(s) 348
MseI TTAA 2 cut(s) 650, 717
MspA1I CMGCKG 1 cut(s) 298
MunI CAATTG 1 cut(s) 471
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 6 cut(s) 109, 199, 211, 262, 566, 569
NdeII GATC 4 cut(s) 85, 250, 276, 478
NlaIII CATG 3 cut(s) 50, 368, 503
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 3 cut(s) 72, 640, 830
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PagI TCATGA 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 6 cut(s) 320, 521, 602, 614, 634, 797
PkrI GCNGC 4 cut(s) 204, 559, 562, 571
PleI GAGTC 3 cut(s) 79, 395, 670
PpsI GAGTC 3 cut(s) 79, 395, 670
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 35
PspOMI GGGCCC 1 cut(s) 33
PspPI GGNCC 4 cut(s) 33, 34, 58, 353
PspPPI RGGWCCY 1 cut(s) 353
PstI CTGCAG 2 cut(s) 204, 547
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 778
RsaNI GTAC 1 cut(s) 777
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 650, 717
SatI GCNGC 4 cut(s) 203, 558, 561, 570
Sau3AI GATC 4 cut(s) 85, 250, 276, 478
Sau96I GGNCC 4 cut(s) 33, 34, 58, 353
SchI GAGTC 3 cut(s) 80, 395, 671
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 3 cut(s) 572, 721, 727
SfcI CTRYAG 2 cut(s) 200, 543
SinI GGWCC 2 cut(s) 58, 353
SmlI CTYRAG 2 cut(s) 89, 414
SmoI CTYRAG 2 cut(s) 89, 414
SphI GCATGC 1 cut(s) 50
Sse9I AATT 2 cut(s) 106, 471
SsiI CCGC 3 cut(s) 449, 822, 855
SspMI CTAG 2 cut(s) 357, 801
TaaI ACNGT 3 cut(s) 485, 658, 715
TasI AATT 2 cut(s) 106, 471
TfiI GAWTC 6 cut(s) 320, 521, 602, 614, 634, 797
Tru1I TTAA 2 cut(s) 650, 717
Tru9I TTAA 2 cut(s) 650, 717
TscAI CASTG 3 cut(s) 204, 718, 823
TseFI GTSAC 3 cut(s) 72, 640, 830
TseI GCWGC 4 cut(s) 202, 557, 560, 569
Tsp45I GTSAC 3 cut(s) 72, 640, 830
TspDTI ATGAA 5 cut(s) 185, 189, 381, 478, 759
TspGWI ACGGA 2 cut(s) 91, 794
TspRI CASTG 3 cut(s) 204, 718, 823
VpaK11BI GGWCC 2 cut(s) 58, 353
XagI CCTNNNNNAGG 1 cut(s) 635
XceI RCATGY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 2 cut(s) 357, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.