FvH4_4g28241

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001591
Physical Location & Seq
Forward (+)
28925223 .. 28931194
5972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28241.t4

Sequence Viewer

Length: 3039 bp
ATGTCGGAAGTCGAGAGCCGGGAGGAGAATTTGAGGAAGATATTGGTGGAGGAAAAGAAGGCCGTAGCTGAGCTCGAAAAGTCTCTGCGTGAAATGCACGAGGAGTATACCCGGACAAAGCGTGCATCCGAGGCGAAGCTGGCTGATGCCAATGCGTTGATTGTTAGTGTTGAGGATAAATCTCTAGTGACAGATGAGAAGTTCCTTGCTGCGGAAGCCAAGCTTGCTGAGGCCAACAAAAAGAGTCTAGAGGTGGAGAGGAGGTTGCAAGAGGTGGAAACACAGGAGAATGTGCTTCGGAGGGAGCAAGCATCGTTAGCTACAGAGAGAGAGGCACACAAGGAAACCTTTTACAGGCAACGAGTAGACTTGAATGAGTGGGAGAAGAAGCTTAAAGAAGGGGAAGCGAGGCTGAGTAATCTTCGAAAACTTTTGAACGAGAAAGAGGAAAAAACAAATGAGAATGAGATAATTCTTAAGCAAAAAGAGAAAGACCTTTATGAGGCTGAAAGGAAGATTGAGTCTTCAAATGCTCTATTGAAAGACAAGGAAGATGATGTCAATAGACGACTAGCTGACCTAGTTTCAAAGGAAAAGGAGGTTGATTCAGCTTCATACATATTAGAGATGAAGGAGAAAGAATTACATGCATTGGAGGAAAAACTAAGTTCAAGAGAAAATGTAGAGATTCAAGAGCATCTTGACCAGCACAGGGCCATTCTTGATAGAAAAACACAAGCCTTTGAGTTGGGACTTGAGGAAAGAAGAAAAGAATTTGACAAAGAACTGAGTAGCAGGATAGATACGGTGGAACAAAAGGAACTTGAAATTAGTCACAAGGAAGAAATATTGAAGAAGCAAGAGAAAGCGTTGGATGAGAAATCTGAGAGGCTGAAGGAGAAAAATAAGGAAGTTGAAGTAAATTTGAAAAATTTGAAGGAGAGAGAGAAGAACTTCAAAGCTGATGAGAAAAAGTTAGAGCTGGAAAGGCAGCAAATACTTGTTAATATAGAGCACCTTCAGAATCTTAAAGATGAAATTCAGAAAATAAAAGATGAAAATGTTCAACTGGAGCAGCAAATTCGTGAAGGGAGAGAGAAGCATGCAATTACTGAGAAAGAGAAGTCAGACCACCTGCGTTTGCAGTCAGAGCTACAACAGGAAATAAACAATTATAGACTTCAGAATGAGTTACTTTTGAAGGAAGCTGAAGATCTGAAGCAGGAGAGGGAAAAGTTCGAAAAAGAGTGGGAAGATTTAGATGAGAGAAGAGCTAAAGTTGATGGAGAGCTAAGAAAAGTTGTTGAAGAGAAAGAACAATTGGAAAGATTGCAATGTATTGAAGCAGAGAGGTTGAAAGAAGAGAGAAAAGCAGTGGAGGATTACAGACAGAGGGAGATAGAAAATCTCAAACAGGAGAGAGAATCATTTACCGCTAAGATGACTAATGGGCAGATAGCCTTATCTGAAAAGGCCCAATCTGAGCATGCTCAAATGGTCCAAGATTTTGAGTCACGGAGAAGAGATCTTGAGACTGATATGCAGAAACGGCAAGATAAGATGGTAAAACAACTGCAGGAAAGGGAGACAGCATTTGAGGAGGAGAAGGATAGAGAATATACTAATATTAATTTCTTGAAGGGAGTTGCTGATAAACAAAGAGAAGAGCTATTATCTGAAAGGAATACGAATGAAAAGGAAAGGGAAGCACTTGCACTGCAGAAGAAGGAGCTAGAAGCCAACCAACTTGAAATGCGAGAAGACATAGATCAGCTTGACAAGCTTAGCAAGAAGATCAAGTGCCAGAGGGAACAGCTGATTGAGGAAAGAGGCCGCTTTCTTGCCTTTGTCGAGAGGGTTAAGAGTTGCAAGGACTGTGGAGAAATAACAAGGGAATTTGTGCTCTCTGATCTCCAAGTACCTGGGATGTATAATGTTGAGGCTGTTCCTAATTCAGAACATAAAGAGTCGGGATGGGGGGAAAAACTGCAACAGAAATGCAAGTTAGTGGTTTCCAAAGTAACTTCAAATAAAAAACTTGATGTGTCTACCGAGTTACCACGACCACCAGCTATGCAGAAAGGGAAGGAGCCTAAATTGCTTGCTAGTGAGGAAGCAAGAGGTCATAGCAGTCATGAAAATGAACCTCAGCCATCTCTTAGGAGATGCAATGACTCTGCCAATGCTGAAGCAGCTGTAGCTGATAACAATTGTAAAGCGGTGGATGGGTATGCTCCATCAATTGACGATTACAGTTTCATTAGCAGCCAGGAGCAAGACATTCCAGAAGATTCTGAGCAATCAGAGCTGAAGAGTGGCCGACGAAAACCAGCTAGGGGACGCAAGTCTAGATTGTCTAGAACACACTCAGTGAAGGCAGTTGTTGAAGATGCGAAGAAATTTTTAGGAGAAACTCCAGAACCATCAAATGCAAGTTTGCTCAATGAGAGTAGTTACATAAATGAGGGTGATTCCAGTTTTACTAGCATCGGTCGGAAACGACCACGCCCTCGTAGCTCCAGGGTAGAAAGCGAGCAAGATGATTGCGATAGTGAAGGACGTTCTGGTAGTGTCACAGCTGGTGGGCATAGGAAGAGGAGGCAACCTGTTGCTTCAGCAGTGCAAACCCCAGGTGGACAGCGATATAATCTCAGAAACCGCAAGACTGCAGGAACATTGGCAGCAGCGTCAGCAGCGCCTCACTTGAAAAGTAGAAGGAAGGAAGAATCAAAACCCGAATCTGTTGGCGCAGAGCTCATTCAGGTCACAACATTAAAACCTGTAGAGTCAACAGAGGAGCGAGTTGTGAGGTTTGCAACACCAGAACCACGAGACACTGTTAATGGCAAGGCTGATGCAACGAAATTGGTTGAAGAGGCAGAGTTGAGTACAGAATTGAATGGCACAGAATCTAGCCACAGCACAGGTGGTGAGAGTGGCGACAGCTCAGGTGATGAGAGCGGTGATGACTATGATGATGAGGATCATCCTGGTCAAGTGTCAATAGGGAAGAAGATCTGGACCTTCTTCAGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1013

Amino Acids

116.9

Weight (kDa)

5.37

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1143
Acc36I ACCTGC 1 cut(s) 1143
AccBSI CCGCTC 1 cut(s) 2961
AccI GTMKAC 3 cut(s) 107, 366, 2048
AciI CCGC 6 cut(s) 212, 1434, 1834, 2219, 2659, 2961
AclWI GGATC 1 cut(s) 2991
AcoI YGGCCR 1 cut(s) 2317
AcsI RAATTY 8 cut(s) 28, 773, 922, 931, 1038, 1080, 1895, 2399
AcuI CTGAAG 9 cut(s) 914, 1004, 1166, 1230, 1238, 2208, 2330, 2598, 3013
AdeI CACNNNGTG 1 cut(s) 2371
AfaI GTAC 2 cut(s) 1920, 2890
AfiI CCNNNNNNNGG 5 cut(s) 211, 354, 502, 712, 2336
AflII CTTAAG 1 cut(s) 476
AjnI CCWGG 5 cut(s) 1921, 2268, 2519, 2629, 2989
AjuI GAANNNNNNNTTGG 2 cut(s) 1304, 1336
Alw21I GWGCWC 4 cut(s) 75, 1017, 1905, 2757
Alw26I GTCTC 4 cut(s) 87, 1526, 1580, 2826
AlwI GGATC 1 cut(s) 2991
AoxI GGCC 6 cut(s) 60, 231, 714, 1473, 1831, 2317
ApeKI GCWGC 8 cut(s) 209, 991, 1075, 2192, 2265, 2681, 2684, 2693
ApoI RAATTY 8 cut(s) 28, 773, 922, 931, 1038, 1080, 1895, 2399
AseI ATTAAT 1 cut(s) 1629
Asp700I GAANNNNTTC 2 cut(s) 953, 1062
AspLEI GCGC 2 cut(s) 2698, 2750
AspS9I GGNCC 4 cut(s) 714, 1474, 1498, 3021
AsuC2I CCSGG 2 cut(s) 20, 112
AsuHPI GGTGA 4 cut(s) 2480, 2942, 2963, 2975
AsuII TTCGAA 2 cut(s) 424, 1239
AvaII GGWCC 2 cut(s) 1498, 3021
BanII GRGCYC 2 cut(s) 75, 2757
BauI CACGAG 2 cut(s) 98, 2829
BbsI GAAGAC 2 cut(s) 516, 1767
Bbv12I GWGCWC 4 cut(s) 75, 1017, 1905, 2757
BbvCI CCTCAGC 2 cut(s) 228, 2148
BbvI GCAGC 8 cut(s) 196, 1003, 1087, 2204, 2277, 2693, 2696, 2705
BccI CCATC 7 cut(s) 1277, 1555, 1968, 2161, 2219, 2245, 2431
BceAI ACGGC 2 cut(s) 47, 1565
BcgI CGANNNNNNTGC 2 cut(s) 1064, 1098
BciT130I CCWGG 5 cut(s) 1923, 2270, 2521, 2631, 2991
BcnI CCSGG 2 cut(s) 20, 112
BcoDI GTCTC 4 cut(s) 87, 1526, 1580, 2826
BfmI CTRYAG 6 cut(s) 321, 1574, 1718, 2196, 2667, 2781
BfoI RGCGCY 1 cut(s) 2699
BfrI CTTAAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 1143
BglII AGATCT 3 cut(s) 1213, 1525, 3015
BisI GCNGC 9 cut(s) 210, 992, 1076, 1834, 2193, 2266, 2682, 2685, 2694
BlpI GCTNAGC 2 cut(s) 69, 1784
BlsI GCNGC 9 cut(s) 211, 993, 1077, 1835, 2194, 2267, 2683, 2686, 2695
Bme1390I CCNGG 7 cut(s) 20, 112, 1923, 2270, 2521, 2631, 2991
Bme18I GGWCC 2 cut(s) 1498, 3021
BmgT120I GGNCC 4 cut(s) 714, 1474, 1498, 3021
BmiI GGNNCC 1 cut(s) 2091
BmrFI CCNGG 7 cut(s) 20, 112, 1923, 2270, 2521, 2631, 2991
BmsI GCATC 8 cut(s) 134, 136, 320, 706, 2156, 2380, 2496, 2845
BoxI GACNNNNGTC 1 cut(s) 2344
BpiI GAAGAC 2 cut(s) 516, 1767
BpmI CTGGAG 3 cut(s) 1091, 2400, 2503
Bpu10I CCTNAGC 3 cut(s) 228, 2148, 2947
Bpu1102I GCTNAGC 2 cut(s) 69, 1784
Bpu14I TTCGAA 2 cut(s) 424, 1239
BpuEI CTTGAG 2 cut(s) 776, 1550
BpuMI CCSGG 2 cut(s) 20, 112
BsaBI GATNNNNATC 1 cut(s) 2982
BsaJI CCNNGG 4 cut(s) 129, 1922, 2520, 2629
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 5 cut(s) 211, 354, 502, 712, 2336
Bse1I ACTGG 2 cut(s) 1074, 2475
Bse3DI GCAATG 2 cut(s) 1340, 2176
Bse8I GATNNNNATC 1 cut(s) 2982
BseBI CCWGG 5 cut(s) 1923, 2270, 2521, 2631, 2991
BseDI CCNNGG 4 cut(s) 129, 1922, 2520, 2629
BseGI GGATG 6 cut(s) 125, 880, 1932, 1979, 2230, 2986
BseJI GATNNNNATC 1 cut(s) 2982
BseLI CCNNNNNNNGG 5 cut(s) 211, 354, 502, 712, 2336
BseMI GCAATG 2 cut(s) 1340, 2176
BseNI ACTGG 2 cut(s) 1074, 2475
BseRI GAGGAG 7 cut(s) 38, 116, 274, 1613, 1616, 2611, 2810
BseXI GCAGC 8 cut(s) 196, 1003, 1087, 2204, 2277, 2693, 2696, 2705
Bsh1285I CGRYCG 1 cut(s) 2494
BshFI GGCC 6 cut(s) 62, 233, 716, 1475, 1833, 2319
BsiEI CGRYCG 1 cut(s) 2494
BsiHKAI GWGCWC 4 cut(s) 75, 1017, 1905, 2757
BsiSI CCGG 2 cut(s) 19, 112
BslFI GGGAC 2 cut(s) 765, 2352
BslI CCNNNNNNNGG 5 cut(s) 211, 354, 502, 712, 2336
BsmAI GTCTC 4 cut(s) 87, 1526, 1580, 2826
BsmFI GGGAC 2 cut(s) 765, 2352
BsnI GGCC 6 cut(s) 62, 233, 716, 1475, 1833, 2319
Bsp119I TTCGAA 2 cut(s) 424, 1239
Bsp1286I GDGCHC 4 cut(s) 75, 1017, 1905, 2757
Bsp143I GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
Bsp1720I GCTNAGC 2 cut(s) 69, 1784
BspACI CCGC 6 cut(s) 212, 1434, 1834, 2219, 2659, 2961
BspANI GGCC 6 cut(s) 62, 233, 716, 1475, 1833, 2319
BspHI TCATGA 1 cut(s) 2134
BspLI GGNNCC 1 cut(s) 2091
BspMAI CTGCAG 3 cut(s) 1578, 1722, 2671
BspMI ACCTGC 1 cut(s) 1143
BspPI GGATC 1 cut(s) 2991
BspQI GCTCTTC 2 cut(s) 1264, 1659
BspT104I TTCGAA 2 cut(s) 424, 1239
BspTI CTTAAG 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 2961
BsrDI GCAATG 2 cut(s) 1340, 2176
BsrI ACTGG 2 cut(s) 1074, 2475
BssECI CCNNGG 4 cut(s) 129, 1922, 2520, 2629
BssMI GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
BssNAI GTATAC 1 cut(s) 108
BssSI CACGAG 2 cut(s) 98, 2829
Bst1107I GTATAC 1 cut(s) 108
Bst2BI CACGAG 2 cut(s) 98, 2829
Bst2UI CCWGG 5 cut(s) 1923, 2270, 2521, 2631, 2991
Bst4CI ACNGT 4 cut(s) 808, 1877, 2255, 2839
Bst6I CTCTTC 8 cut(s) 1264, 1302, 1356, 1516, 1659, 2306, 2588, 2868
BstAFI CTTAAG 1 cut(s) 476
BstBI TTCGAA 2 cut(s) 424, 1239
BstC8I GCNNGC 8 cut(s) 123, 141, 225, 309, 1104, 1488, 2103, 2534
BstENI CCTNNNNNAGG 2 cut(s) 352, 500
BstF5I GGATG 6 cut(s) 125, 880, 1932, 1979, 2230, 2986
BstH2I RGCGCY 1 cut(s) 2699
BstHHI GCGC 2 cut(s) 2698, 2750
BstKTI GATC 7 cut(s) 1216, 1528, 1771, 1797, 1912, 2986, 3018
BstMAI GTCTC 4 cut(s) 87, 1526, 1580, 2826
BstMBI GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
BstMCI CGRYCG 1 cut(s) 2494
BstNI CCWGG 5 cut(s) 1923, 2270, 2521, 2631, 2991
BstNSI RCATGY 3 cut(s) 650, 1106, 1490
BstPAI GACNNNNGTC 1 cut(s) 2344
BstSCI CCNGG 7 cut(s) 18, 110, 1921, 2268, 2519, 2629, 2989
BstSFI CTRYAG 6 cut(s) 321, 1574, 1718, 2196, 2667, 2781
BstV1I GCAGC 8 cut(s) 196, 1003, 1087, 2204, 2277, 2693, 2696, 2705
BstV2I GAAGAC 2 cut(s) 516, 1767
BstX2I RGATCY 3 cut(s) 1213, 1525, 3015
BstXI CCANNNNNNTGG 1 cut(s) 1922
BstYI RGATCY 3 cut(s) 1213, 1525, 3015
BstZ17I GTATAC 1 cut(s) 108
BsuRI GGCC 6 cut(s) 62, 233, 716, 1475, 1833, 2319
BtsCI GGATG 6 cut(s) 125, 880, 1932, 1979, 2230, 2986
BtsI GCAGTG 3 cut(s) 1380, 1715, 2625
BtsIMutI CAGTG 5 cut(s) 1380, 1715, 2376, 2625, 2835
BveI ACCTGC 1 cut(s) 1143
Cac8I GCNNGC 8 cut(s) 123, 141, 225, 309, 1104, 1488, 2103, 2534
CciI TCATGA 1 cut(s) 2134
CfoI GCGC 2 cut(s) 2698, 2750
Cfr13I GGNCC 4 cut(s) 714, 1474, 1498, 3021
CseI GACGC 2 cut(s) 2349, 2676
Csp6I GTAC 2 cut(s) 1919, 2889
CspCI CAANNNNNGTGG 2 cut(s) 1858, 1893
CviAII CATG 5 cut(s) 647, 1103, 1487, 2135, 3036
CviQI GTAC 2 cut(s) 1919, 2889
DpnI GATC 7 cut(s) 1215, 1527, 1770, 1796, 1911, 2985, 3017
DpnII GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
DraIII CACNNNGTG 1 cut(s) 2371
EaeI YGGCCR 1 cut(s) 2317
Eam1104I CTCTTC 8 cut(s) 1264, 1302, 1356, 1516, 1659, 2306, 2588, 2868
EarI CTCTTC 8 cut(s) 1264, 1302, 1356, 1516, 1659, 2306, 2588, 2868
Ecl136II GAGCTC 2 cut(s) 73, 2755
Eco24I GRGCYC 2 cut(s) 75, 2757
Eco47I GGWCC 2 cut(s) 1498, 3021
Eco53kI GAGCTC 2 cut(s) 73, 2755
Eco57I CTGAAG 9 cut(s) 914, 1004, 1166, 1230, 1238, 2208, 2330, 2598, 3013
EcoICRI GAGCTC 2 cut(s) 73, 2755
EcoNI CCTNNNNNAGG 2 cut(s) 352, 500
EcoRII CCWGG 5 cut(s) 1921, 2268, 2519, 2629, 2989
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 75, 2757
FaeI CATG 5 cut(s) 650, 1106, 1490, 2138, 3039
FalI AAGNNNNNCTT 6 cut(s) 207, 239, 332, 364, 684, 716
FaqI GGGAC 2 cut(s) 765, 2352
FatI CATG 5 cut(s) 646, 1102, 1486, 2134, 3035
FblI GTMKAC 3 cut(s) 107, 366, 2048
Fnu4HI GCNGC 9 cut(s) 210, 992, 1076, 1834, 2193, 2266, 2682, 2685, 2694
FokI GGATG 6 cut(s) 112, 887, 1939, 1986, 2237, 2973
FriOI GRGCYC 2 cut(s) 75, 2757
Fsp4HI GCNGC 9 cut(s) 210, 992, 1076, 1834, 2193, 2266, 2682, 2685, 2694
GlaI GCGC 2 cut(s) 2697, 2749
GluI GCNGC 9 cut(s) 210, 992, 1076, 1834, 2193, 2266, 2682, 2685, 2694
GsuI CTGGAG 3 cut(s) 1091, 2400, 2503
HaeII RGCGCY 1 cut(s) 2699
HaeIII GGCC 6 cut(s) 62, 233, 716, 1475, 1833, 2319
HapII CCGG 2 cut(s) 19, 112
HgaI GACGC 2 cut(s) 2349, 2676
HhaI GCGC 2 cut(s) 2698, 2750
Hin1II CATG 5 cut(s) 650, 1106, 1490, 2138, 3039
Hin6I GCGC 2 cut(s) 2696, 2748
HinP1I GCGC 2 cut(s) 2696, 2748
HincII GTYRAC 1 cut(s) 2790
HindII GTYRAC 1 cut(s) 2790
HindIII AAGCTT 3 cut(s) 221, 389, 1781
HpaII CCGG 2 cut(s) 19, 112
HphI GGTGA 4 cut(s) 2480, 2942, 2963, 2975
Hpy166II GTNNAC 5 cut(s) 108, 367, 2049, 2636, 2790
Hpy8I GTNNAC 5 cut(s) 108, 367, 2049, 2636, 2790
Hpy99I CGWCG 1 cut(s) 2325
HpyCH4III ACNGT 4 cut(s) 808, 1877, 2255, 2839
HpyCH4IV ACGT 1 cut(s) 2560
HpySE526I ACGT 1 cut(s) 2560
Hsp92II CATG 5 cut(s) 650, 1106, 1490, 2138, 3039
HspAI GCGC 2 cut(s) 2696, 2748
Kzo9I GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
LguI GCTCTTC 2 cut(s) 1264, 1659
LmnI GCTCC 8 cut(s) 304, 1072, 1729, 2089, 2239, 2272, 2522, 2797
Lsp1109I GCAGC 8 cut(s) 196, 1003, 1087, 2204, 2277, 2693, 2696, 2705
LweI GCATC 8 cut(s) 134, 136, 320, 706, 2156, 2380, 2496, 2845
MaeII ACGT 1 cut(s) 2560
MaeIII GTNAC 9 cut(s) 187, 833, 1191, 1512, 2020, 2055, 2453, 2572, 2764
MalI GATC 7 cut(s) 1215, 1527, 1770, 1796, 1911, 2985, 3017
MbiI CCGCTC 1 cut(s) 2961
MboI GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
MfeI CAATTG 3 cut(s) 1319, 2209, 2241
MflI RGATCY 3 cut(s) 1213, 1525, 3015
MhlI GDGCHC 4 cut(s) 75, 1017, 1905, 2757
MlyI GAGTC 6 cut(s) 253, 530, 1520, 1976, 2168, 2795
MmeI TCCRAC 2 cut(s) 852, 2474
Mph1103I ATGCAT 1 cut(s) 652
MroXI GAANNNNTTC 2 cut(s) 953, 1062
MseI TTAA 8 cut(s) 393, 477, 1005, 1029, 1629, 1860, 2774, 2841
MslI CAYNNNNRTG 1 cut(s) 2139
MspA1I CMGCKG 3 cut(s) 1816, 2195, 2579
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 2 cut(s) 19, 112
MspR9I CCNGG 7 cut(s) 20, 112, 1923, 2270, 2521, 2631, 2991
MunI CAATTG 3 cut(s) 1319, 2209, 2241
MvaI CCWGG 5 cut(s) 1923, 2270, 2521, 2631, 2991
NciI CCSGG 2 cut(s) 20, 112
NdeII GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
NlaIII CATG 5 cut(s) 650, 1106, 1490, 2138, 3039
NlaIV GGNNCC 1 cut(s) 2091
NmuCI GTSAC 5 cut(s) 187, 833, 1512, 2572, 2764
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 3 cut(s) 650, 1106, 1490
NspV TTCGAA 2 cut(s) 424, 1239
PaeI GCATGC 2 cut(s) 1106, 1490
PagI TCATGA 1 cut(s) 2134
PaqCI CACCTGC 1 cut(s) 1143
PciSI GCTCTTC 2 cut(s) 1264, 1659
PdmI GAANNNNTTC 2 cut(s) 953, 1062
PfeI GAWTC 9 cut(s) 605, 688, 1024, 1424, 2291, 2471, 2726, 2738, 2909
PkrI GCNGC 9 cut(s) 211, 993, 1077, 1835, 2194, 2267, 2683, 2686, 2695
PleI GAGTC 6 cut(s) 252, 529, 1519, 1975, 2168, 2794
PpsI GAGTC 6 cut(s) 252, 529, 1519, 1975, 2168, 2794
PshAI GACNNNNGTC 1 cut(s) 2344
PshBI ATTAAT 1 cut(s) 1629
Psp124BI GAGCTC 2 cut(s) 75, 2757
Psp6I CCWGG 5 cut(s) 1921, 2268, 2519, 2629, 2989
PspGI CCWGG 5 cut(s) 1921, 2268, 2519, 2629, 2989
PspN4I GGNNCC 1 cut(s) 2091
PspPI GGNCC 4 cut(s) 714, 1474, 1498, 3021
PstI CTGCAG 3 cut(s) 1578, 1722, 2671
PsuI RGATCY 3 cut(s) 1213, 1525, 3015
PvuII CAGCTG 3 cut(s) 1816, 2195, 2579
RsaI GTAC 2 cut(s) 1920, 2890
RsaNI GTAC 2 cut(s) 1919, 2889
RseI CAYNNNNRTG 1 cut(s) 2139
SacI GAGCTC 2 cut(s) 75, 2757
SapI GCTCTTC 2 cut(s) 1264, 1659
SaqAI TTAA 8 cut(s) 393, 477, 1005, 1029, 1629, 1860, 2774, 2841
SatI GCNGC 9 cut(s) 210, 992, 1076, 1834, 2193, 2266, 2682, 2685, 2694
Sau3AI GATC 7 cut(s) 1213, 1525, 1768, 1794, 1909, 2983, 3015
Sau96I GGNCC 4 cut(s) 714, 1474, 1498, 3021
SchI GAGTC 6 cut(s) 253, 530, 1520, 1976, 2168, 2795
ScrFI CCNGG 7 cut(s) 20, 112, 1923, 2270, 2521, 2631, 2991
SduI GDGCHC 4 cut(s) 75, 1017, 1905, 2757
SfaNI GCATC 8 cut(s) 134, 136, 320, 706, 2156, 2380, 2496, 2845
SfcI CTRYAG 6 cut(s) 321, 1574, 1718, 2196, 2667, 2781
SfuI TTCGAA 2 cut(s) 424, 1239
SinI GGWCC 2 cut(s) 1498, 3021
SmiMI CAYNNNNRTG 1 cut(s) 2139
SmlI CTYRAG 3 cut(s) 476, 755, 1529
SmoI CTYRAG 3 cut(s) 476, 755, 1529
SphI GCATGC 2 cut(s) 1106, 1490
SsiI CCGC 6 cut(s) 212, 1434, 1834, 2219, 2659, 2961
SspI AATATT 2 cut(s) 849, 1627
SstI GAGCTC 2 cut(s) 75, 2757
StyD4I CCNGG 7 cut(s) 18, 110, 1921, 2268, 2519, 2629, 2989
TaaI ACNGT 4 cut(s) 808, 1877, 2255, 2839
TaiI ACGT 1 cut(s) 2563
TaqI TCGA 5 cut(s) 12, 75, 424, 1239, 1851
TaqII GACCGA 1 cut(s) 2480
TatI WGTACW 1 cut(s) 2888
TauI GCSGC 1 cut(s) 1836
TfiI GAWTC 9 cut(s) 605, 688, 1024, 1424, 2291, 2471, 2726, 2738, 2909
Tru1I TTAA 8 cut(s) 393, 477, 1005, 1029, 1629, 1860, 2774, 2841
Tru9I TTAA 8 cut(s) 393, 477, 1005, 1029, 1629, 1860, 2774, 2841
TscAI CASTG 5 cut(s) 1380, 1722, 2376, 2625, 2842
TseFI GTSAC 5 cut(s) 187, 833, 1512, 2572, 2764
TseI GCWGC 8 cut(s) 209, 991, 1075, 2192, 2265, 2681, 2684, 2693
Tsp45I GTSAC 5 cut(s) 187, 833, 1512, 2572, 2764
TspDTI ATGAA 8 cut(s) 603, 644, 1050, 1071, 1707, 2151, 2157, 2248
TspGWI ACGGA 1 cut(s) 1531
TspRI CASTG 5 cut(s) 1380, 1722, 2376, 2625, 2842
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 1498, 3021
VspI ATTAAT 1 cut(s) 1629
XagI CCTNNNNNAGG 2 cut(s) 352, 500
XapI RAATTY 8 cut(s) 28, 773, 922, 931, 1038, 1080, 1895, 2399
XbaI TCTAGA 3 cut(s) 247, 2348, 2357
XceI RCATGY 3 cut(s) 650, 1106, 1490
XcmI CCANNNNNNNNNTGG 1 cut(s) 2924
XmiI GTMKAC 3 cut(s) 107, 366, 2048
XmnI GAANNNNTTC 2 cut(s) 953, 1062
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.