Rh4AG346000

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001591
Physical Location & Seq
Forward (+)
65432325 .. 65434607
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG346000.1

Sequence Viewer

Length: 699 bp
ATGAATGAAAAGGAAAGGGAAGCGCTTGCACTGCAGCAGAAGGAGCTGGAAGTGAACCAACTTGAAACGCGAGAAGACATAGATCAGCTTGACAAGCTTAGTAAGAAGATCAAGTGCCAGAGGGAACAGCTGATTGGGGAAAGAGGAAAGGAATCCAACTTTCTTGCTGATGAGGAAGCAAGAGGTCCTAGCAGTCATGAAGAGCCTCAGCCATCTCTTAGGAGATGTAATGACTCGGCCAATGCTCAAGCAGTCGTAACTGATAACAACTCTAAGGAGGCGGATGATGGGTATGCTCCATCAATTGAGGATCACAGTTTCATTGACAGCCATGAGCAAGACATTCCAGAAGATTCTGAGCGACACCACAAGACTGCAGGCACATTGGCAGCAGCATCAGCAGCGCCTCACCTGAAAAGTAGAAGGAAGGAAGAATCAAATCCTGAATCTGTTGGTGTAGACCTGATTCAGGTCACAACATTAAAAACTGTGGAGTCAACAGAGGAGCGAGTTGTGAGGTTTGCAACACCAGAACCACAAGACACTGTTAATGGCAATGCTGATGCTGATGCTGATGAAACGAAGTTGGTTGAAGAGAGAGAGTTGAGTACGGAAGTGAATGGCACAGAATCTAGTGGTGGCAACAGCACTGGCGGGGAGAGTGACAACAGCACAGGTGATGAGAGCGGTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.4

Weight (kDa)

4.46

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 687
AccI GTMKAC 1 cut(s) 459
AccII CGCG 1 cut(s) 70
AciI CCGC 3 cut(s) 281, 654, 687
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 1 cut(s) 237
AfaI GTAC 1 cut(s) 610
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 2 cut(s) 65, 593
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 4 cut(s) 46, 88, 97, 130
AluI AGCT 4 cut(s) 46, 88, 97, 130
AlwI GGATC 1 cut(s) 318
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 4 cut(s) 34, 389, 392, 401
AspLEI GCGC 2 cut(s) 25, 406
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 401, 689
AvaII GGWCC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 46, 401, 404, 413
BccI CCATC 3 cut(s) 220, 281, 307
BfaI CTAG 2 cut(s) 189, 633
BfmI CTRYAG 2 cut(s) 32, 375
BfoI RGCGCY 2 cut(s) 26, 407
BisI GCNGC 4 cut(s) 35, 390, 393, 402
BlsI GCNGC 4 cut(s) 36, 391, 394, 403
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmsI GCATC 3 cut(s) 404, 553, 559
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 1 cut(s) 562
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 221, 348
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 4 cut(s) 46, 401, 404, 413
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 469
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 3 cut(s) 82, 108, 310
BspACI CCGC 3 cut(s) 281, 654, 687
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 2 cut(s) 220, 349
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 196
BspMAI CTGCAG 2 cut(s) 36, 379
BspPI GGATC 1 cut(s) 318
BspQI GCTCTTC 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 687
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 1 cut(s) 655
BssMI GATC 3 cut(s) 82, 108, 310
Bst4CI ACNGT 3 cut(s) 317, 490, 547
Bst6I CTCTTC 2 cut(s) 195, 588
BstC8I GCNNGC 2 cut(s) 27, 379
BstDEI CTNAG 5 cut(s) 98, 207, 218, 273, 357
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 2 cut(s) 26, 407
BstHHI GCGC 2 cut(s) 25, 406
BstKTI GATC 3 cut(s) 85, 111, 313
BstMBI GATC 3 cut(s) 82, 108, 310
BstMWI GCNNNNNNNGC 5 cut(s) 31, 43, 94, 398, 401
BstSFI CTRYAG 2 cut(s) 32, 375
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 4 cut(s) 46, 401, 404, 413
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 3 cut(s) 29, 543, 648
Cac8I GCNNGC 2 cut(s) 27, 379
CciI TCATGA 1 cut(s) 196
CfoI GCGC 2 cut(s) 25, 406
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 609
CviAII CATG 2 cut(s) 197, 332
CviJI RGCY 8 cut(s) 46, 88, 97, 130, 205, 211, 239, 330
CviKI_1 RGCY 8 cut(s) 46, 88, 97, 130, 205, 211, 239, 330
CviQI GTAC 1 cut(s) 609
DdeI CTNAG 5 cut(s) 98, 207, 218, 273, 357
DpnI GATC 3 cut(s) 84, 110, 312
DpnII GATC 3 cut(s) 82, 108, 310
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 195, 588
EarI CTCTTC 2 cut(s) 195, 588
EciI GGCGGA 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 185
FaeI CATG 2 cut(s) 200, 335
FaiI YATR 4 cut(s) 80, 198, 294, 333
FatI CATG 2 cut(s) 196, 331
FauI CCCGC 1 cut(s) 647
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 4 cut(s) 35, 390, 393, 402
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 4 cut(s) 35, 390, 393, 402
FspBI CTAG 2 cut(s) 189, 633
GlaI GCGC 2 cut(s) 24, 405
GluI GCNGC 4 cut(s) 35, 390, 393, 402
HaeII RGCGCY 2 cut(s) 26, 407
HaeIII GGCC 1 cut(s) 239
HhaI GCGC 2 cut(s) 25, 406
Hin1II CATG 2 cut(s) 200, 335
Hin6I GCGC 2 cut(s) 23, 404
HinP1I GCGC 2 cut(s) 23, 404
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 8 cut(s) 152, 233, 353, 434, 446, 466, 494, 629
HphI GGTGA 2 cut(s) 401, 689
Hpy166II GTNNAC 3 cut(s) 55, 460, 498
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 197, 347, 443
Hpy8I GTNNAC 3 cut(s) 55, 460, 498
HpyAV CCTTC 3 cut(s) 34, 417, 421
HpyCH4III ACNGT 3 cut(s) 317, 490, 547
HpyCH4V TGCA 4 cut(s) 29, 34, 377, 524
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 43, 94, 398, 401
HpyF3I CTNAG 5 cut(s) 98, 207, 218, 273, 357
Hsp92II CATG 2 cut(s) 200, 335
HspAI GCGC 2 cut(s) 23, 404
Kzo9I GATC 3 cut(s) 82, 108, 310
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 43, 301, 505
Lsp1109I GCAGC 4 cut(s) 46, 401, 404, 413
LweI GCATC 3 cut(s) 404, 553, 559
MaeI CTAG 2 cut(s) 189, 633
MaeIII GTNAC 3 cut(s) 256, 472, 662
MalI GATC 3 cut(s) 84, 110, 312
MbiI CCGCTC 1 cut(s) 687
MboI GATC 3 cut(s) 82, 108, 310
MboII GAAGA 6 cut(s) 86, 118, 212, 362, 443, 605
MfeI CAATTG 1 cut(s) 303
MluCI AATT 1 cut(s) 303
MlyI GAGTC 2 cut(s) 227, 503
MmeI TCCRAC 1 cut(s) 180
MseI TTAA 2 cut(s) 482, 549
MspA1I CMGCKG 1 cut(s) 130
MunI CAATTG 1 cut(s) 303
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 5 cut(s) 31, 43, 94, 398, 401
NdeII GATC 3 cut(s) 82, 108, 310
NlaIII CATG 2 cut(s) 200, 335
NmeAIII GCCGAG 1 cut(s) 215
NmuCI GTSAC 2 cut(s) 472, 662
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 195
PfeI GAWTC 6 cut(s) 152, 353, 434, 446, 466, 629
PkrI GCNGC 4 cut(s) 36, 391, 394, 403
PleI GAGTC 2 cut(s) 227, 502
PpsI GAGTC 2 cut(s) 227, 502
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
PspPI GGNCC 1 cut(s) 185
PspPPI RGGWCCY 1 cut(s) 185
PstI CTGCAG 2 cut(s) 36, 379
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 482, 549
SatI GCNGC 4 cut(s) 35, 390, 393, 402
Sau3AI GATC 3 cut(s) 82, 108, 310
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 2 cut(s) 227, 503
SfaNI GCATC 3 cut(s) 404, 553, 559
SfcI CTRYAG 2 cut(s) 32, 375
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 1 cut(s) 303
SsiI CCGC 3 cut(s) 281, 654, 687
SspMI CTAG 2 cut(s) 189, 633
TaaI ACNGT 3 cut(s) 317, 490, 547
TasI AATT 1 cut(s) 303
TfiI GAWTC 6 cut(s) 152, 353, 434, 446, 466, 629
Tru1I TTAA 2 cut(s) 482, 549
Tru9I TTAA 2 cut(s) 482, 549
TscAI CASTG 3 cut(s) 36, 550, 655
TseFI GTSAC 2 cut(s) 472, 662
TseI GCWGC 4 cut(s) 34, 389, 392, 401
Tsp45I GTSAC 2 cut(s) 472, 662
TspDTI ATGAA 5 cut(s) 17, 21, 213, 310, 591
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 3 cut(s) 36, 550, 655
VpaK11BI GGWCC 1 cut(s) 185
XagI CCTNNNNNAGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 189, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.