Rmu_co7990620.1_g000001

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7990620.1
OG0001591
Physical Location & Seq
Forward (+)
1 .. 520
520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7990620.1_g000001.1.cds

Sequence Viewer

Length: 358 bp
tgcaggcacattggcagcaacatcagcagcgcctcacctgaaaagtacaaggaaggaagaatcaaatcctgaatctgttggtgtagacctgatacaggtcacaacattaaaaaccgtggagtcaacagaggagcgagttgtgaggtttgcaacaccagaaccacaagacactgttaatggcaatgctgatgctgatgcaacgaagttggttgaagagacagagttgagtacggaagtgaatgacacagaatctagtggtggcaacagcacaggcggtgagagtgacaacagcacaggtgatgagagcggcgatgactatgatgatgaggatcatcctggtcaagcgtcaatagggaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.37

Weight (kDa)

4.05

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 85
AciI CCGC 2 cut(s) 274, 307
AclWI GGATC 1 cut(s) 337
AfaI GTAC 2 cut(s) 47, 230
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 213
AjnI CCWGG 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 15, 27
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 27, 288, 309
BbvI GCAGC 2 cut(s) 27, 39
BciT130I CCWGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 3 cut(s) 16, 28, 308
BlsI GCNGC 3 cut(s) 17, 29, 309
Bme1390I CCNGG 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 179, 185
BsaBI GATNNNNATC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 328
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 332
BseJI GATNNNNATC 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 27, 39
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 2 cut(s) 274, 307
BspPI GGATC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 116, 173
Bst6I CTCTTC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 115
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 27, 39
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 5
CfoI GCGC 1 cut(s) 32
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 46, 229
CviQI GTAC 2 cut(s) 46, 229
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 335
FaiI YATR 1 cut(s) 319
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 3 cut(s) 16, 28, 308
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 16, 28, 308
FspBI CTAG 1 cut(s) 253
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 16, 28, 308
HaeII RGCGCY 1 cut(s) 33
HgaI GACGC 1 cut(s) 334
HhaI GCGC 1 cut(s) 32
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 4 cut(s) 60, 72, 120, 249
HphI GGTGA 3 cut(s) 27, 288, 309
Hpy166II GTNNAC 2 cut(s) 86, 124
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 2 cut(s) 86, 124
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 116, 173
HpyCH4V TGCA 3 cut(s) 3, 150, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 9 cut(s) 51, 81, 82, 102, 169, 256, 280, 322, 349
Lsp1109I GCAGC 2 cut(s) 27, 39
LweI GCATC 2 cut(s) 179, 185
MaeI CTAG 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 98, 282
MalI GATC 1 cut(s) 331
MbiI CCGCTC 1 cut(s) 307
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 69, 225
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 4 cut(s) 43, 122, 136, 320
MseI TTAA 2 cut(s) 108, 175
MspR9I CCNGG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 1 cut(s) 329
NmuCI GTSAC 2 cut(s) 98, 282
PfeI GAWTC 3 cut(s) 60, 72, 249
PkrI GCNGC 3 cut(s) 17, 29, 309
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
RsaI GTAC 2 cut(s) 47, 230
RsaNI GTAC 2 cut(s) 46, 229
SaqAI TTAA 2 cut(s) 108, 175
SatI GCNGC 3 cut(s) 16, 28, 308
Sau3AI GATC 1 cut(s) 329
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 337
SetI ASST 5 cut(s) 40, 91, 100, 147, 299
SfaNI GCATC 2 cut(s) 179, 185
SsiI CCGC 2 cut(s) 274, 307
SspMI CTAG 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 335
TaaI ACNGT 2 cut(s) 116, 173
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 3 cut(s) 60, 72, 249
Tru1I TTAA 2 cut(s) 108, 175
Tru9I TTAA 2 cut(s) 108, 175
TscAI CASTG 1 cut(s) 176
TseFI GTSAC 2 cut(s) 98, 282
TseI GCWGC 2 cut(s) 15, 27
Tsp45I GTSAC 2 cut(s) 98, 282
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 176
XagI CCTNNNNNAGG 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.