Rorug07G0235000

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001591
Physical Location & Seq
Forward (+)
21567606 .. 21568562
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0235000.1

Sequence Viewer

Length: 633 bp
ATGGAAAAAATTGATCAGAGAAGCTGCAGTACCCTAGCTAAAACCTTGGGAACAATAGTTTCAATATCAGGGGCTTTCATTGTGACTCTTTACAAGGGACCCCCACAACTGATGACAACCTCAGTTGATTTATTGTCTCACAATCAACTTTTCTTGCCGCAGTCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGCCTGCAGCATTTCTTATCGTACAGGCATCAGTATTAAAAAAATACCCAGTAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTATAGTGGTGTTGTGGTTTGTGGAAAGAGACTTAAGTGCTTTAGCCTTAAACCCTAAGTTAAGGGAGTTTTTGGCTCAGCGTTACATGGTGTCTATGTTCAAGCCTTTAGGTATTGTAGTTGCAGTTGCCATTGGTGTTATCTTCTTGGGGGATACTTTCTACCTTGGAAGTTTGATAGGAGCAATTGTAATTGTCATTGGATTTTACTCTGTGATATGGGGCAAAGCCAATGAGGAGAAGATGGATGATGATGCAGGGGCAAGGAGTTTGGCATCAAAGAAACAACGGATTCCATTACTGCAAAACATTATTGAAGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.28

Weight (kDa)

8.39

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 1 cut(s) 158
AfaI GTAC 2 cut(s) 31, 231
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 4 cut(s) 63, 305, 409, 623
AluBI AGCT 3 cut(s) 24, 38, 265
AluI AGCT 3 cut(s) 24, 38, 265
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 2 cut(s) 141, 330
ApeKI GCWGC 2 cut(s) 24, 215
AspS9I GGNCC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 11, 227
BccI CCATC 1 cut(s) 544
BciVI GTATCC 1 cut(s) 454
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 141, 330
BfaI CTAG 2 cut(s) 35, 631
BfmI CTRYAG 3 cut(s) 25, 213, 309
BfrI CTTAAG 1 cut(s) 340
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 3 cut(s) 25, 158, 216
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 3 cut(s) 26, 159, 217
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 3 cut(s) 99, 100, 210
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 245, 550, 590
BmuI ACTGGG 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 171, 203
Bpu1102I GCTNAGC 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 45, 190, 472
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bse1I ACTGG 1 cut(s) 257
BseDI CCNNGG 3 cut(s) 45, 190, 472
BseGI GGATG 1 cut(s) 559
BseMII CTCAG 2 cut(s) 135, 398
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 2 cut(s) 11, 227
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 267
BslFI GGGAC 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 141, 330
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 13
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 1 cut(s) 158
BspCNI CTCAG 2 cut(s) 134, 397
BspLI GGNNCC 3 cut(s) 99, 100, 210
BspMAI CTGCAG 2 cut(s) 29, 217
BspT107I GGYRCC 1 cut(s) 208
BspTI CTTAAG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 45, 190, 472
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 3 cut(s) 45, 190, 472
BstAFI CTTAAG 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 121, 363, 384
BstF5I GGATG 1 cut(s) 559
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 2 cut(s) 141, 330
BstMBI GATC 1 cut(s) 13
BstSFI CTRYAG 3 cut(s) 25, 213, 309
BstV1I GCAGC 2 cut(s) 11, 227
BsuI GTATCC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 30, 230
CviAII CATG 1 cut(s) 394
CviJI RGCY 9 cut(s) 24, 38, 74, 265, 299, 353, 383, 412, 536
CviKI_1 RGCY 9 cut(s) 24, 38, 74, 265, 299, 353, 383, 412, 536
CviQI GTAC 2 cut(s) 30, 230
DdeI CTNAG 3 cut(s) 121, 363, 384
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 45, 190, 472
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 98
EcoT14I CCWWGG 3 cut(s) 45, 190, 472
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 3 cut(s) 45, 190, 472
FaeI CATG 1 cut(s) 397
FaiI YATR 5 cut(s) 272, 311, 395, 404, 526
FaqI GGGAC 1 cut(s) 111
FatI CATG 1 cut(s) 393
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 25, 158, 216
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 25, 158, 216
FspBI CTAG 2 cut(s) 35, 631
GluI GCNGC 3 cut(s) 25, 158, 216
Hin1II CATG 1 cut(s) 397
HinfI GANTC 2 cut(s) 85, 598
Hpy188I TCNGA 1 cut(s) 18
HpyCH4V TGCA 5 cut(s) 27, 215, 431, 563, 610
HpyF3I CTNAG 3 cut(s) 121, 363, 384
Hsp92II CATG 1 cut(s) 397
KflI GGGWCCC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 2 cut(s) 192, 488
LpnPI CCDG 5 cut(s) 54, 218, 225, 270, 549
Lsp1109I GCAGC 2 cut(s) 11, 227
LweI GCATC 3 cut(s) 245, 550, 590
MaeI CTAG 2 cut(s) 35, 631
MaeIII GTNAC 2 cut(s) 82, 389
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 442, 559
MfeI CAATTG 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 9, 166, 492, 498
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 3 cut(s) 130, 173, 535
MseI TTAA 4 cut(s) 245, 341, 356, 368
MspCI CTTAAG 1 cut(s) 340
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 189
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 3 cut(s) 99, 100, 210
NmuCI GTSAC 1 cut(s) 82
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 598
PkrI GCNGC 3 cut(s) 26, 159, 217
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 99, 100, 210
PspPI GGNCC 1 cut(s) 98
PspPPI RGGWCCY 1 cut(s) 98
PstI CTGCAG 2 cut(s) 29, 217
RsaI GTAC 2 cut(s) 31, 231
RsaNI GTAC 2 cut(s) 30, 230
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 4 cut(s) 245, 341, 356, 368
SatI GCNGC 3 cut(s) 25, 158, 216
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 267
SetI ASST 7 cut(s) 26, 40, 47, 122, 267, 421, 474
SfaNI GCATC 3 cut(s) 245, 550, 590
SfcI CTRYAG 3 cut(s) 25, 213, 309
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 4 cut(s) 9, 166, 492, 498
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 35, 631
SstI GAGCTC 1 cut(s) 267
StyI CCWWGG 3 cut(s) 45, 190, 472
TaqI TCGA 1 cut(s) 164
TasI AATT 4 cut(s) 9, 166, 492, 498
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 4 cut(s) 245, 341, 356, 368
Tru9I TTAA 4 cut(s) 245, 341, 356, 368
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 24, 215
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 610
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 98
XspI CTAG 2 cut(s) 35, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.