Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001591

Physical Location & Seq

Genomic Coordinates Forward (+)

51486055 .. 51486474

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG355000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGTAATGAGCAGATAGCCTTATCTGAAAGGGCCCTATCTGAGCATGCTCAAATGGTCCAAGATTTTGAGTCACGGAGAAGAGATCTTGAGATTGATATGCAGAATTGGCAGGATAAGATGGTAAAACAACTGCAGGAAAGGGAGAGAGCATTTGAGGAGGAGAAGGATAGAGAACATACTAATATTAATTTCTTGAAGGGAGTTGCTGATAAGCAAAGAAAAGAGCTATTATCTGAAAGGAATATGAATGAAAAGGAAAGGGAAGCGCTTGCACTGCAGCAGAAGGAGCTGGAAGCGAACCAACTTGAAACGCGAGAAGACATAGATCAGCTTGACAAGCTTAGCAAGAAGATCAAGTGCCAGAGGGAACAGCTGATTGAGGAAAGAGGTCGCTTTCTTGCCTTTGTACCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

16.75

Weight (kDa)

5.18

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13220 AT1G13220 AT1G13220
fragaria_vesca	FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241 FvH4_4g28241
malus_domestica	MD13G1048500.v1.1 MD16G1049800.v1.1
prunus_persica	Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1 Prupe.1G303700_v2.0.a1
pyrus_communis	pycom13g04280 pycom16g04330 pycom16g04350
rosa_chinensis	RchiOBHm_Chr4g0436091 RchiOBHm_Chr4g0436101 RchiOBHm_Chr7g0226101
rosa_laevigata	RLG00000001768 RLG00000006539
rosa_multiflora	Rmu_co7990620.1_g000001 Rmu_co8047562.1_g000001 Rmu_co8303205.1_g000001 Rmu_sc0000456.1_g000001 Rmu_sc0006301.1_g000004 Rmu_sc0027081.1_g000001 Rmu_sc0043134.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233250 Rroxscaffold_5G00377210
rosa_rugosa	Rorug04G0291800 Rorug04G0291900 Rorug04G0292000 Rorug07G0234900 Rorug07G0235000
rosa_samantha	Rh4AG346000 Rh4BG355000 Rh4BG355100 Rh4CG369500 Rh4CG369600 Rh4CG369700 Rh4DG348700 Rh7AG368200 Rh7BG369100 Rh7CG386500 Rh7DG380100
rosa_wichuraiana	Rw2G017160 Rw4G030240 Rw7G031950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	316
AfaI	GTAC	1 cut(s)	411
AfeI	AGCGCT	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	199, 311
AluBI	AGCT	5 cut(s)	229, 292, 334, 343, 376
AluI	AGCT	5 cut(s)	229, 292, 334, 343, 376
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	1 cut(s)	33
ApaI	GGGCCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	33, 34, 58
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	115
BfmI	CTRYAG	2 cut(s)	134, 278
BfoI	RGCGCY	1 cut(s)	272
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	281
BlpI	GCTNAGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	33, 34, 58
BmiI	GGNNCC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	173, 176
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	35
Bsp120I	GGGCCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	85, 328, 354
Bsp1720I	GCTNAGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	2 cut(s)	138, 282
BssMI	GATC	3 cut(s)	85, 328, 354
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	48, 273
BstDEI	CTNAG	2 cut(s)	42, 344
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	88, 331, 357
BstMBI	GATC	3 cut(s)	85, 328, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 277, 289, 340
BstNSI	RCATGY	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	134, 278
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	48, 273
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	33, 34, 58
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	2 cut(s)	47, 414
CviJI	RGCY	7 cut(s)	20, 35, 229, 292, 334, 343, 376
CviKI_1	RGCY	7 cut(s)	20, 35, 229, 292, 334, 343, 376
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	42, 344
DpnI	GATC	3 cut(s)	87, 330, 356
DpnII	GATC	3 cut(s)	85, 328, 354
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	270
EcoO109I	RGGNCCY	2 cut(s)	33, 34
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	2 cut(s)	50, 417
FaiI	YATR	6 cut(s)	48, 101, 180, 248, 326, 415
FatI	CATG	2 cut(s)	46, 413
Fnu4HI	GCNGC	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	281
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	2 cut(s)	50, 417
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	28, 43, 238
Hpy188III	TCNNGA	2 cut(s)	89, 196
HpyAV	CCTTC	3 cut(s)	160, 193, 280
HpyCH4V	TGCA	4 cut(s)	103, 136, 275, 280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 277, 289, 340
HpyF3I	CTNAG	2 cut(s)	42, 344
Hsp92II	CATG	2 cut(s)	50, 417
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	85, 328, 354
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	4 cut(s)	98, 122, 278, 377
Lsp1109I	GCAGC	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	87, 330, 356
MboI	GATC	3 cut(s)	85, 328, 354
MboII	GAAGA	3 cut(s)	93, 332, 364
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	106, 190
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	151, 154, 360, 376, 383
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	109, 277, 289, 340
NdeII	GATC	3 cut(s)	85, 328, 354
NlaIII	CATG	2 cut(s)	50, 417
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	35
PspOMI	GGGCCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	33, 34, 58
PstI	CTGCAG	2 cut(s)	138, 282
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	85, 328, 354
Sau96I	GGNCC	3 cut(s)	33, 34, 58
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	231, 294, 336, 345, 378, 394
SfcI	CTRYAG	2 cut(s)	134, 278
SinI	GGWCC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	50
Sse9I	AATT	2 cut(s)	106, 190
SspI	AATATT	1 cut(s)	187
TasI	AATT	2 cut(s)	106, 190
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	263, 267
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	189
XceI	RCATGY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.