Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Forward (+)

5508311 .. 5511736

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTCATCGCCGTCGAAGTTTCTCCGGTAATGGAAGACATCACACGGCAGAGCAAAAAAACTTCGGTTGAGAATGAAACCGGCGATGATCAGTCAGCAACATCAGTAGTCCTTAAAGCTAAACGCAAACGCCGATCGCAACCACGAGACGCTCCACCCCAACGTAGCTCCGTCCATAGAGGCGTCACAAGGCATCGATGGACTGGAAGGTACGAAGCACATTTGTGGGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGGCATATGACGAGGAAGATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGGACGAGACACCATCTTGAACTTCCCTTTGTGTAATTATGAAGAAGACATCAAAGAAATGGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTCACGAGGTGTATCAAAATACAGAGGCGTTGCAAAGCATCACCACAATGGGAGATGGGAAGCTCGAATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGAAGAAGCAGCTATAGCGTACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTACTAACTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCTATCGATACCGCGAATAATCTCCTCGAGAGTCCGCATTCTGATCTTAGCCCATTTATAAAACCTAACCACGAGTCTGACTTATCACAGAGTCAATCTTCGTCAGAGGACAACGATGATCGGAAAACAAAGCTCTTGAAGTCGTCACCTTTAGTGGCAGAGGAGGTAATCGGACCATCGACGCCACCTGAGATTGCTCCGCCTCGTCGGAGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCCGGCAAGTTAACGGCGGAGGAAGATGATGTTATCTTCGGTGATTTAGATTCTTTCCTTACGCCTGATTTCTACAGCGAGTTAAATGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

345

Amino Acids

39.17

Weight (kDa)

5.62

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	57 - 116	5.8e-11	AP2 domain
AP2	PF00847	159 - 210	1.6e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AccB1I	GGYRCC	1 cut(s)	679
AccII	CGCG	2 cut(s)	575, 704
AciI	CCGC	4 cut(s)	702, 725, 890, 959
AclWI	GGATC	1 cut(s)	442
AcvI	CACGTG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	183, 872
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	212, 602, 623
AfiI	CCNNNNNNNGG	2 cut(s)	418, 682
AgsI	TTSAA	3 cut(s)	337, 364, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AleI	CACNNNNGTG	1 cut(s)	223
AluBI	AGCT	7 cut(s)	119, 168, 524, 593, 614, 823, 903
AluI	AGCT	7 cut(s)	119, 168, 524, 593, 614, 823, 903
Alw26I	GTCTC	2 cut(s)	141, 345
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	716
ApeKI	GCWGC	5 cut(s)	305, 308, 329, 590, 611
AspS9I	GGNCC	1 cut(s)	863
AsuC2I	CCSGG	2 cut(s)	677, 908
AsuHPI	GGTGA	3 cut(s)	494, 828, 995
AvaI	CYCGRG	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	863
BanI	GGYRCC	1 cut(s)	679
BauI	CACGAG	3 cut(s)	144, 465, 761
BbrPI	CACGTG	1 cut(s)	314
BbsI	GAAGAC	3 cut(s)	42, 274, 396
BbvI	GCAGC	5 cut(s)	317, 320, 341, 602, 623
BccI	CCATC	4 cut(s)	192, 365, 510, 874
BceAI	ACGGC	4 cut(s)	62, 623, 645, 972
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	677, 908
BcoDI	GTCTC	2 cut(s)	141, 345
BfmI	CTRYAG	2 cut(s)	594, 1015
BisI	GCNGC	5 cut(s)	306, 309, 330, 591, 612
BlsI	GCNGC	5 cut(s)	307, 310, 331, 592, 613
Bme1390I	CCNGG	2 cut(s)	677, 908
Bme18I	GGWCC	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	863
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	2 cut(s)	677, 908
BmsI	GCATC	3 cut(s)	202, 292, 508
BpiI	GAAGAC	3 cut(s)	42, 274, 396
BpuMI	CCSGG	2 cut(s)	677, 908
Bsa29I	ATCGAT	2 cut(s)	196, 696
BsaAI	YACGTR	1 cut(s)	314
BsaHI	GRCGYC	2 cut(s)	183, 872
BsaJI	CCNNGG	2 cut(s)	562, 625
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 682
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	208, 412
BseCI	ATCGAT	2 cut(s)	196, 696
BseDI	CCNNGG	2 cut(s)	562, 625
BseLI	CCNNNNNNNGG	2 cut(s)	418, 682
BseMII	CTCAG	2 cut(s)	266, 870
BseNI	ACTGG	2 cut(s)	208, 412
BseRI	GAGGAG	2 cut(s)	704, 866
BseXI	GCAGC	5 cut(s)	317, 320, 341, 602, 623
Bsh1236I	CGCG	2 cut(s)	575, 704
Bsh1285I	CGRYCG	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	679
BshVI	ATCGAT	2 cut(s)	196, 696
BsiEI	CGRYCG	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	716
BsiSI	CCGG	6 cut(s)	26, 81, 677, 683, 908, 945
BsiWI	CGTACG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	418, 682
BsmAI	GTCTC	2 cut(s)	141, 345
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	727
BsoBI	CYCGRG	1 cut(s)	716
Bsp143I	GATC	5 cut(s)	88, 134, 434, 733, 808
BspACI	CCGC	4 cut(s)	702, 725, 890, 959
BspCNI	CTCAG	2 cut(s)	265, 871
BspDI	ATCGAT	2 cut(s)	196, 696
BspFNI	CGCG	2 cut(s)	575, 704
BspLI	GGNNCC	1 cut(s)	681
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	208, 412
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	562, 625
BssMI	GATC	5 cut(s)	88, 134, 434, 733, 808
BssNI	GRCGYC	2 cut(s)	183, 872
BssSI	CACGAG	3 cut(s)	144, 465, 761
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	3 cut(s)	144, 465, 761
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	2 cut(s)	417, 529
BstACI	GRCGYC	2 cut(s)	183, 872
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	252, 325, 737, 879
BstDSI	CCRYGG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	575, 704
BstKTI	GATC	5 cut(s)	91, 137, 437, 736, 811
BstMAI	GTCTC	2 cut(s)	141, 345
BstMBI	GATC	5 cut(s)	88, 134, 434, 733, 808
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 596
BstSCI	CCNGG	2 cut(s)	675, 906
BstSFI	CTRYAG	2 cut(s)	594, 1015
BstUI	CGCG	2 cut(s)	575, 704
BstV1I	GCAGC	5 cut(s)	317, 320, 341, 602, 623
BstV2I	GAAGAC	3 cut(s)	42, 274, 396
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
Bsu15I	ATCGAT	2 cut(s)	196, 696
BsuTUI	ATCGAT	2 cut(s)	196, 696
BtgI	CCRYGG	1 cut(s)	625
BtgZI	GCGATG	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	863
ClaI	ATCGAT	2 cut(s)	196, 696
CseI	GACGC	4 cut(s)	158, 172, 586, 880
Csp6I	GTAC	3 cut(s)	211, 601, 622
CviQI	GTAC	3 cut(s)	211, 601, 622
DdeI	CTNAG	4 cut(s)	252, 325, 737, 879
DpnI	GATC	5 cut(s)	90, 136, 436, 735, 810
DpnII	GATC	5 cut(s)	88, 134, 434, 733, 808
DraIII	CACNNNGTG	1 cut(s)	470
Eam1104I	CTCTTC	2 cut(s)	417, 529
EarI	CTCTTC	2 cut(s)	417, 529
EciI	GGCGGA	2 cut(s)	879, 974
Eco130I	CCWWGG	1 cut(s)	562
Eco32I	GATATC	2 cut(s)	607, 916
Eco47I	GGWCC	1 cut(s)	863
Eco72I	CACGTG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	716
EcoRV	GATATC	2 cut(s)	607, 916
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	141
FaiI	YATR	9 cut(s)	177, 277, 289, 291, 384, 429, 559, 596, 749
FaqI	GGGAC	1 cut(s)	360
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	5 cut(s)	306, 309, 330, 591, 612
Fsp4HI	GCNGC	5 cut(s)	306, 309, 330, 591, 612
GluI	GCNGC	5 cut(s)	306, 309, 330, 591, 612
HapII	CCGG	6 cut(s)	26, 81, 677, 683, 908, 945
HgaI	GACGC	4 cut(s)	158, 172, 586, 880
Hin1I	GRCGYC	2 cut(s)	183, 872
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	6 cut(s)	528, 630, 721, 764, 781, 992
HpaI	GTTAAC	1 cut(s)	954
HpaII	CCGG	6 cut(s)	26, 81, 677, 683, 908, 945
HphI	GGTGA	3 cut(s)	494, 828, 995
Hpy166II	GTNNAC	2 cut(s)	629, 954
Hpy188I	TCNGA	9 cut(s)	255, 533, 669, 733, 769, 796, 813, 863, 900
Hpy188III	TCNNGA	5 cut(s)	361, 465, 718, 826, 919
Hpy8I	GTNNAC	2 cut(s)	629, 954
Hpy99I	CGWCG	4 cut(s)	17, 580, 874, 900
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	3 cut(s)	163, 313, 923
HpyCH4V	TGCA	2 cut(s)	305, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 596
HpyF3I	CTNAG	4 cut(s)	252, 325, 737, 879
HpySE526I	ACGT	3 cut(s)	163, 313, 923
Hsp92I	GRCGYC	2 cut(s)	183, 872
Ksp22I	TGATCA	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	954
Kzo9I	GATC	5 cut(s)	88, 134, 434, 733, 808
LmnI	GCTCC	4 cut(s)	157, 173, 892, 900
Lsp1109I	GCAGC	5 cut(s)	317, 320, 341, 602, 623
LweI	GCATC	3 cut(s)	202, 292, 508
MaeII	ACGT	3 cut(s)	163, 313, 923
MaeIII	GTNAC	3 cut(s)	184, 640, 834
MalI	GATC	5 cut(s)	90, 136, 436, 735, 810
MboI	GATC	5 cut(s)	88, 134, 434, 733, 808
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	4 cut(s)	624, 730, 773, 790
MmeI	TCCRAC	2 cut(s)	221, 878
MseI	TTAA	3 cut(s)	114, 953, 1025
MslI	CAYNNNNRTG	2 cut(s)	223, 507
MspI	CCGG	6 cut(s)	26, 81, 677, 683, 908, 945
MspR9I	CCNGG	2 cut(s)	677, 908
Mva1269I	GAATGC	1 cut(s)	727
MvnI	CGCG	2 cut(s)	575, 704
MwoI	GCNNNNNNNGC	2 cut(s)	314, 596
NciI	CCSGG	2 cut(s)	677, 908
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	5 cut(s)	88, 134, 434, 733, 808
NlaIV	GGNNCC	1 cut(s)	681
NmuCI	GTSAC	2 cut(s)	184, 834
OliI	CACNNNNGTG	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	2 cut(s)	130, 615
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	528, 992
Pfl23II	CGTACG	1 cut(s)	600
PfoI	TCCNGGA	1 cut(s)	906
PkrI	GCNGC	5 cut(s)	307, 310, 331, 592, 613
Ple19I	CGATCG	1 cut(s)	137
PleI	GAGTC	4 cut(s)	624, 729, 772, 789
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
PpsI	GAGTC	4 cut(s)	624, 729, 772, 789
Ppu21I	YACGTR	1 cut(s)	314
PsiI	TTATAA	1 cut(s)	749
PspCI	CACGTG	1 cut(s)	314
PspLI	CGTACG	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	434
PvuI	CGATCG	1 cut(s)	137
RsaI	GTAC	3 cut(s)	212, 602, 623
RsaNI	GTAC	3 cut(s)	211, 601, 622
RseI	CAYNNNNRTG	2 cut(s)	223, 507
SaqAI	TTAA	3 cut(s)	114, 953, 1025
SatI	GCNGC	5 cut(s)	306, 309, 330, 591, 612
Sau3AI	GATC	5 cut(s)	88, 134, 434, 733, 808
Sau96I	GGNCC	1 cut(s)	863
SchI	GAGTC	4 cut(s)	624, 730, 773, 790
ScrFI	CCNGG	2 cut(s)	677, 908
SfaNI	GCATC	3 cut(s)	202, 292, 508
SfcI	CTRYAG	2 cut(s)	594, 1015
Sfr274I	CTCGAG	1 cut(s)	716
SinI	GGWCC	1 cut(s)	863
SlaI	CTCGAG	1 cut(s)	716
SmiMI	CAYNNNNRTG	2 cut(s)	223, 507
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	4 cut(s)	702, 725, 890, 959
SspI	AATATT	2 cut(s)	341, 554
StyD4I	CCNGG	2 cut(s)	675, 906
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	3 cut(s)	166, 316, 926
TaqI	TCGA	8 cut(s)	15, 196, 526, 618, 651, 696, 717, 869
TasI	AATT	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	528, 992
Tru1I	TTAA	3 cut(s)	114, 953, 1025
Tru9I	TTAA	3 cut(s)	114, 953, 1025
TseFI	GTSAC	2 cut(s)	184, 834
TseI	GCWGC	5 cut(s)	305, 308, 329, 590, 611
Tsp45I	GTSAC	2 cut(s)	184, 834
TspDTI	ATGAA	2 cut(s)	90, 399
TspGWI	ACGGA	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	863
XhoI	CTCGAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.