Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002197

Physical Location & Seq

Genomic Coordinates Reverse (-)

54493432 .. 54496847

Gene Structure 3416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG379500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGCAATAGAGTATCGTGGACTTAATGCCGTAACGAACTTCGATCTTAGCCGTTACATCAAGTCACTGTGCCCCAATAATGAGAACGTTCCCAACAACACGCAACCAAACCCTAATGCTGACCTCAGTTCGATTCAAAACCCTGATTCTAAGGTAGGGTTAGGGTTTATGCCCCACAACCCGAGTCCGAGCACTAGTGAGTCAATGGTAGCAGTGCCACGGCAGGGGAATGGTTCGTCGGCGTCATCTGCACTAGGGCTTTTATTGCAGTCCCCTAAGTTCAAGGAAATGCTCGAGAGGACGTCAGTGGTAGACTGTTCGTCAACGACGACTTTGGAGCCAAACATGCCGCGCCGGAGTTTCCCCGATGACATTCAAACGTACTTTGATTGTCAAGATTTGAATAGCTATGCAGAAGGAGACGACATTATTTTCGGGGAGTTAAACTCATTTGCTTCACCTGTTTTTCATTGTGAACTTGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010033 GO:0010035 GO:0010187 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042304 GO:0045723 GO:0045834 GO:0045923 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1900140 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

163

Amino Acids

17.77

Weight (kDa)

4.42

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G16060 AT1G79700 AT1G79700 AT1G79700 AT1G79700
fragaria_vesca	FvH4_4g08800 FvH4_6g28200 FvH4_6g28200 FvH4_6g28200
malus_domestica	MD09G1228500.v1.1 MD16G1258700.v1.1 MD17G1226700.v1.1
prunus_persica	Prupe.1G101600_v2.0.a1 Prupe.3G104100_v2.0.a1
pyrus_communis	pycom09g14740 pycom17g23010
rosa_chinensis	RchiOBHm_Chr2g0132251 RchiOBHm_Chr4g0405371
rosa_laevigata	RLG00000008847 RLG00000019240
rosa_multiflora	Rmu_sc0006313.1_g000002 Rmu_sc0011487.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112250 Rroxscaffold_5G00349830
rosa_rugosa	Rorug02G0303000 Rorug02G0303000 Rorug04G0057800
rosa_samantha	Rh2AG356200 Rh2BG362600 Rh2CG339700 Rh2DG379500 Rh4AG131300 Rh4BG125900 Rh4CG138400 Rh4DG125400
rosa_wichuraiana	Rw2G028940 Rw4G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	353
AclI	AACGTT	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	245, 305
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	140, 286, 380, 406
AhdI	GACNNNNNGTC	1 cut(s)	322
AhlI	ACTAGT	1 cut(s)	197
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	417
Ama87I	CYCGRG	2 cut(s)	184, 296
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspLEI	GCGC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	453
AvaI	CYCGRG	2 cut(s)	184, 296
BaeGI	GKGCMC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	3 cut(s)	17, 39, 239
BcoDI	GTCTC	1 cut(s)	417
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	2 cut(s)	198, 257
BisI	GCNGC	2 cut(s)	6, 353
BlsI	GCNGC	2 cut(s)	7, 354
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	2 cut(s)	184, 296
BmiI	GGNNCC	1 cut(s)	342
BmsI	GCATC	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BsaHI	GRCGYC	2 cut(s)	245, 305
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	2 cut(s)	184, 296
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	417
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	259
BsoBI	CYCGRG	2 cut(s)	184, 296
Bsp1286I	GDGCHC	2 cut(s)	77, 197
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	2 cut(s)	245, 305
Bst4CI	ACNGT	2 cut(s)	72, 320
BstACI	GRCGYC	2 cut(s)	245, 305
BstDEI	CTNAG	4 cut(s)	50, 128, 153, 279
BstDSI	CCRYGG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 268, 349
BstNSI	RCATGY	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	68, 222, 315
CfoI	GCGC	1 cut(s)	357
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	4 cut(s)	54, 262, 343, 411
CviKI_1	RGCY	4 cut(s)	54, 262, 343, 411
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	4 cut(s)	50, 128, 153, 279
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	322
Eam1105I	GACNNNNNGTC	1 cut(s)	322
Eco88I	CYCGRG	2 cut(s)	184, 296
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	1 cut(s)	352
FaiI	YATR	3 cut(s)	173, 350, 414
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	6, 353
Fsp4HI	GCNGC	2 cut(s)	6, 353
FspBI	CTAG	2 cut(s)	198, 257
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	6, 353
HapII	CCGG	1 cut(s)	358
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	2 cut(s)	245, 305
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	4 cut(s)	136, 149, 187, 203
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	4 cut(s)	23, 316, 327, 479
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	298, 398
Hpy8I	GTNNAC	4 cut(s)	23, 316, 327, 479
Hpy99I	CGWCG	2 cut(s)	244, 334
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	72, 320
HpyCH4IV	ACGT	3 cut(s)	90, 305, 383
HpyCH4V	TGCA	3 cut(s)	254, 271, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 268, 349
HpyF3I	CTNAG	4 cut(s)	50, 128, 153, 279
HpySE526I	ACGT	3 cut(s)	90, 305, 383
Hsp92I	GRCGYC	2 cut(s)	245, 305
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	4 cut(s)	159, 212, 371, 477
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	2 cut(s)	198, 257
MaeII	ACGT	3 cut(s)	90, 305, 383
MaeIII	GTNAC	3 cut(s)	34, 56, 66
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	77, 197
MlyI	GAGTC	2 cut(s)	196, 212
MnlI	CCTC	2 cut(s)	137, 294
MseI	TTAA	2 cut(s)	27, 446
MspI	CCGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	3 cut(s)	251, 268, 349
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	136, 149
PkrI	GCNGC	2 cut(s)	7, 354
PleI	GAGTC	2 cut(s)	195, 211
PpsI	GAGTC	2 cut(s)	195, 211
Psp1406I	AACGTT	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	342
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	27, 446
SatI	GCNGC	2 cut(s)	6, 353
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	196, 212
SduI	GDGCHC	2 cut(s)	77, 197
SetI	ASST	7 cut(s)	93, 129, 159, 308, 386, 413, 466
SfaNI	GCATC	1 cut(s)	475
Sfr274I	CTCGAG	1 cut(s)	296
SlaI	CTCGAG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	2 cut(s)	198, 257
TaaI	ACNGT	2 cut(s)	72, 320
TaiI	ACGT	3 cut(s)	93, 308, 386
TaqI	TCGA	3 cut(s)	45, 134, 297
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	136, 149
Tru1I	TTAA	2 cut(s)	27, 446
Tru9I	TTAA	2 cut(s)	27, 446
TscAI	CASTG	3 cut(s)	75, 222, 315
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	461
TspRI	CASTG	3 cut(s)	75, 222, 315
XceI	RCATGY	1 cut(s)	352
XhoI	CTCGAG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	2 cut(s)	198, 257
ZraI	GACGTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.