MD09G1228500.v1.1

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
28222762 .. 28226188
3427 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1228500.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGCGAAAACCTCACAGAAAAAGCAGAACAGTACTGCTGGAAGCACTAACGACAGCACCACCACCACAACCACCACTAGCAGTACTGCTACAACAACAACAAAAGGCAAGCGGACACAGAAAAGCGTTCGCCGTGACTCTCCGCCCCAGCGGAGCTCCGTCTACCGTGGTGTCACGAGGCATCGATGGACGGGTCGATTCGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAGTCGCAGAACAAGAAAGGAAGACAAGGGGCATATGATGACGAAGAAGCTGCTGGACGTGCTTATGACTTGGCAGCATTAAAGTACTGGGGACGAGATACAATCCTCAATTTCCCGTTATCCACTTATCAAGAAGAGCTCATAGAACTGGAGAGCCAGTCGAAAGAAGAATACATTGGATCATTGCGAAGGAAAAGTAGTGGATTTTCCCGCGGGGTTTCAAAGTATAGAGGCGTGGCAAGACACCATCAAAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATATGGAAACAAATACCTTTACCTTGGAACCTACGCTACACAAGAAGAAGCAGCCATAGCATATGACATGGCAGCAATAGAGTACCGTGGACTTAATGCCGTTACAAACTTTGATCTTAGCCGTTACATCAAGTCTCTGTGCCCAGATAATACAAACGAGCCTAACGACGCTCAACAAAACCCTAACGGTGACCTCCATCAAATGCAAAACCCTAATGGTGTCCTCAATCAAATGCACAACCCTGACTATAAACCAGAACTGGAGATCATGCCTGACCACACGAGTTCGAGTAGCGCTAGTGAGTCAACCGTAGTTTTGCCACGGTCAGAAAATGGTTCATCGGCGTCATCCGCACTAGGGCTCTTGCTACAATCTCCTAAGTTTAAGGAAATGCTCGAGAGATCCTCTGTTACGGAATGCTCTCCAACTCTTTCAGAGCCGGAAATACGTAGACGCATTTTTCCCGATGACATTCAAACGTATTTTGATTGCCAAGACTTGAACAGCTTTGCGGAAGGAGACGACATTATTTTTGGTGACTTACGATCGTTTACTTCACCTGTTTTTCACTGTGAACTCGATGCATGA

Protein Analysis

369

Amino Acids

41.46

Weight (kDa)

6.28

Isoelectric Point (pI)

60.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 53 - 109 9.3e-07 AP2 domain
AP2 PF00847 152 - 203 6.1e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 162, 970
AccII CGCG 1 cut(s) 447
AciI CCGC 7 cut(s) 112, 143, 151, 445, 447, 870, 1031
AclWI GGATC 2 cut(s) 421, 915
AcyI GRCGYC 1 cut(s) 863
AfaI GTAC 4 cut(s) 34, 85, 320, 602
AfeI AGCGCT 1 cut(s) 814
AfiI CCNNNNNNNGG 1 cut(s) 876
AgsI TTSAA 3 cut(s) 456, 995, 1021
AjiI CACGTC 1 cut(s) 293
AjuI GAANNNNNNNTTGG 4 cut(s) 393, 425, 492, 524
AluBI AGCT 6 cut(s) 156, 206, 284, 373, 503, 1026
AluI AGCT 6 cut(s) 156, 206, 284, 373, 503, 1026
Alw21I GWGCWC 2 cut(s) 158, 375
Alw26I GTCTC 2 cut(s) 657, 1032
AlwI GGATC 2 cut(s) 421, 915
Ama87I CYCGRG 1 cut(s) 914
Aor51HI AGCGCT 1 cut(s) 814
ApeKI GCWGC 4 cut(s) 284, 308, 569, 590
ArsI GACNNNNNNTTYG 2 cut(s) 1034, 1066
AspLEI GCGC 1 cut(s) 815
AsuHPI GGTGA 3 cut(s) 719, 1067, 1068
AsuII TTCGAA 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 914
BaeGI GKGCMC 1 cut(s) 662
BanII GRGCYC 3 cut(s) 158, 375, 882
BauI CACGAG 2 cut(s) 175, 799
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 158, 375
BbvI GCAGC 4 cut(s) 271, 320, 581, 602
BccI CCATC 4 cut(s) 180, 489, 489, 723
BceAI ACGGC 3 cut(s) 117, 602, 624
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcoDI GTCTC 2 cut(s) 657, 1032
BfaI CTAG 3 cut(s) 78, 816, 875
BfoI RGCGCY 1 cut(s) 816
BisI GCNGC 4 cut(s) 285, 309, 570, 591
BlsI GCNGC 4 cut(s) 286, 310, 571, 592
BmcAI AGTACT 3 cut(s) 34, 85, 320
BmeT110I CYCGRG 1 cut(s) 914
BmgBI CACGTC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 547
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 190, 1090
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 908, 940
BpmI CTGGAG 2 cut(s) 404, 800
Bpu14I TTCGAA 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 968
BsaHI GRCGYC 1 cut(s) 863
BsaJI CCNNGG 5 cut(s) 166, 445, 541, 604, 839
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 876
Bse1I ACTGG 4 cut(s) 326, 387, 391, 783
Bse3DI GCAATG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 5 cut(s) 166, 445, 541, 604, 839
BseGI GGATG 1 cut(s) 866
BseLI CCNNNNNNNGG 1 cut(s) 876
BseMI GCAATG 1 cut(s) 416
BseNI ACTGG 4 cut(s) 326, 387, 391, 783
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 4 cut(s) 271, 320, 581, 602
BseYI CCCAGC 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 1067
BshVI ATCGAT 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 1067
BsiHKAI GWGCWC 2 cut(s) 158, 375
BsiHKCI CYCGRG 1 cut(s) 914
BsiSI CCGG 1 cut(s) 959
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 876
BsmAI GTCTC 2 cut(s) 657, 1032
BsmBI CGTCTC 1 cut(s) 1032
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 914
Bsp119I TTCGAA 1 cut(s) 201
Bsp1286I GDGCHC 4 cut(s) 158, 375, 662, 882
Bsp143I GATC 5 cut(s) 413, 631, 783, 920, 1064
BspACI CCGC 7 cut(s) 112, 143, 151, 445, 447, 870, 1031
BspDI ATCGAT 1 cut(s) 184
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 547
BspPI GGATC 2 cut(s) 421, 915
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 416
BsrI ACTGG 4 cut(s) 326, 387, 391, 783
BssECI CCNNGG 5 cut(s) 166, 445, 541, 604, 839
BssMI GATC 5 cut(s) 413, 631, 783, 920, 1064
BssNI GRCGYC 1 cut(s) 863
BssSI CACGAG 2 cut(s) 175, 799
BssT1I CCWWGG 1 cut(s) 541
Bst2BI CACGAG 2 cut(s) 175, 799
Bst4CI ACNGT 7 cut(s) 32, 167, 605, 707, 829, 843, 1091
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 968
BstBI TTCGAA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 635, 897
BstDSI CCRYGG 4 cut(s) 166, 445, 604, 839
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 1 cut(s) 866
BstFNI CGCG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 816
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 5 cut(s) 416, 634, 786, 923, 1067
BstMAI GTCTC 2 cut(s) 657, 1032
BstMBI GATC 5 cut(s) 413, 631, 783, 920, 1064
BstMCI CGRYCG 1 cut(s) 1067
BstMWI GCNNNNNNNGC 3 cut(s) 293, 575, 869
BstPI GGTNACC 1 cut(s) 707
BstSLI GKGCMC 1 cut(s) 662
BstSNI TACGTA 1 cut(s) 968
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 4 cut(s) 271, 320, 581, 602
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 920
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 920
Bsu15I ATCGAT 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 184
BtgI CCRYGG 4 cut(s) 166, 445, 604, 839
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 866
BtsIMutI CAGTG 1 cut(s) 1087
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 815
Cfr42I CCGCGG 1 cut(s) 448
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 3 cut(s) 695, 852, 981
Csp6I GTAC 4 cut(s) 33, 84, 319, 601
CviAII CATG 3 cut(s) 586, 787, 1104
CviQI GTAC 4 cut(s) 33, 84, 319, 601
DdeI CTNAG 2 cut(s) 635, 897
DpnI GATC 5 cut(s) 415, 633, 785, 922, 1066
DpnII GATC 5 cut(s) 413, 631, 783, 920, 1064
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 2 cut(s) 156, 373
Eco105I TACGTA 1 cut(s) 968
Eco130I CCWWGG 1 cut(s) 541
Eco24I GRGCYC 3 cut(s) 158, 375, 882
Eco47III AGCGCT 1 cut(s) 814
Eco53kI GAGCTC 2 cut(s) 156, 373
Eco88I CYCGRG 1 cut(s) 914
Eco91I GGTNACC 1 cut(s) 707
EcoICRI GAGCTC 2 cut(s) 156, 373
EcoO65I GGTNACC 1 cut(s) 707
EcoT14I CCWWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 1105
EcoT38I GRGCYC 3 cut(s) 158, 375, 882
ErhI CCWWGG 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 1032
FaeI CATG 3 cut(s) 589, 790, 1107
FaqI GGGAC 1 cut(s) 339
FatI CATG 3 cut(s) 585, 786, 1103
FauI CCCGC 2 cut(s) 440, 452
FauNDI CATATG 2 cut(s) 268, 580
FblI GTMKAC 2 cut(s) 162, 970
Fnu4HI GCNGC 4 cut(s) 285, 309, 570, 591
FokI GGATG 1 cut(s) 853
FriOI GRGCYC 3 cut(s) 158, 375, 882
Fsp4HI GCNGC 4 cut(s) 285, 309, 570, 591
FspBI CTAG 3 cut(s) 78, 816, 875
GlaI GCGC 1 cut(s) 814
GluI GCNGC 4 cut(s) 285, 309, 570, 591
GsaI CCCAGC 1 cut(s) 151
GsuI CTGGAG 2 cut(s) 404, 800
HaeII RGCGCY 1 cut(s) 816
HapII CCGG 1 cut(s) 959
HgaI GACGC 3 cut(s) 695, 852, 981
HhaI GCGC 1 cut(s) 815
Hin1I GRCGYC 1 cut(s) 863
Hin1II CATG 3 cut(s) 589, 790, 1107
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HincII GTYRAC 1 cut(s) 825
HindII GTYRAC 1 cut(s) 825
HinfI GANTC 4 cut(s) 137, 198, 236, 821
HpaII CCGG 1 cut(s) 959
HphI GGTGA 3 cut(s) 719, 1067, 1068
Hpy166II GTNNAC 6 cut(s) 163, 608, 825, 971, 1071, 1094
Hpy188I TCNGA 2 cut(s) 847, 955
Hpy188III TCNNGA 4 cut(s) 175, 365, 916, 983
Hpy8I GTNNAC 6 cut(s) 163, 608, 825, 971, 1071, 1094
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 2 cut(s) 417, 1028
HpyCH4III ACNGT 7 cut(s) 32, 167, 605, 707, 829, 843, 1091
HpyCH4IV ACGT 3 cut(s) 292, 967, 998
HpyCH4V TGCA 3 cut(s) 724, 754, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 575, 869
HpyF3I CTNAG 2 cut(s) 635, 897
HpySE526I ACGT 3 cut(s) 292, 967, 998
Hsp92I GRCGYC 1 cut(s) 863
Hsp92II CATG 3 cut(s) 589, 790, 1107
HspAI GCGC 1 cut(s) 813
KspI CCGCGG 1 cut(s) 448
Kzo9I GATC 5 cut(s) 413, 631, 783, 920, 1064
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 153, 161
Lsp1109I GCAGC 4 cut(s) 271, 320, 581, 602
LweI GCATC 2 cut(s) 190, 1090
MaeI CTAG 3 cut(s) 78, 816, 875
MaeII ACGT 3 cut(s) 292, 967, 998
MaeIII GTNAC 7 cut(s) 134, 172, 619, 641, 707, 928, 1055
MalI GATC 5 cut(s) 415, 633, 785, 922, 1066
MboI GATC 5 cut(s) 413, 631, 783, 920, 1064
MboII GAAGA 6 cut(s) 267, 290, 380, 413, 504, 575
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 4 cut(s) 158, 375, 662, 882
MluCI AATT 3 cut(s) 223, 343, 507
MlyI GAGTC 3 cut(s) 131, 245, 830
MmeI TCCRAC 1 cut(s) 968
MnlI CCTC 7 cut(s) 22, 171, 350, 458, 722, 752, 934
Mph1103I ATGCAT 1 cut(s) 1105
MseI TTAA 3 cut(s) 314, 612, 903
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 2 cut(s) 151, 447
MspI CCGG 1 cut(s) 959
Mva1269I GAATGC 1 cut(s) 941
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 293, 575, 869
NdeI CATATG 2 cut(s) 268, 580
NdeII GATC 5 cut(s) 413, 631, 783, 920, 1064
NlaIII CATG 3 cut(s) 589, 790, 1107
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 4 cut(s) 134, 172, 707, 1055
NsiI ATGCAT 1 cut(s) 1105
NspV TTCGAA 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 914
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PctI GAATGC 1 cut(s) 941
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 4 cut(s) 286, 310, 571, 592
Ple19I CGATCG 1 cut(s) 1067
PleI GAGTC 3 cut(s) 131, 244, 829
PpsI GAGTC 3 cut(s) 131, 244, 829
Ppu21I YACGTR 1 cut(s) 968
Psp124BI GAGCTC 2 cut(s) 158, 375
PspEI GGTNACC 1 cut(s) 707
PspFI CCCAGC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 547
PsrI GAACNNNNNNTAC 2 cut(s) 538, 570
PsuI RGATCY 1 cut(s) 920
PvuI CGATCG 1 cut(s) 1067
RsaI GTAC 4 cut(s) 34, 85, 320, 602
RsaNI GTAC 4 cut(s) 33, 84, 319, 601
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 2 cut(s) 158, 375
SacII CCGCGG 1 cut(s) 448
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 314, 612, 903
SatI GCNGC 4 cut(s) 285, 309, 570, 591
Sau3AI GATC 5 cut(s) 413, 631, 783, 920, 1064
ScaI AGTACT 3 cut(s) 34, 85, 320
SchI GAGTC 3 cut(s) 131, 245, 830
SduI GDGCHC 4 cut(s) 158, 375, 662, 882
SfaNI GCATC 2 cut(s) 190, 1090
Sfr274I CTCGAG 1 cut(s) 914
Sfr303I CCGCGG 1 cut(s) 448
SfuI TTCGAA 1 cut(s) 201
SgrBI CCGCGG 1 cut(s) 448
SlaI CTCGAG 1 cut(s) 914
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SnaBI TACGTA 1 cut(s) 968
Sse9I AATT 3 cut(s) 223, 343, 507
SsiI CCGC 7 cut(s) 112, 143, 151, 445, 447, 870, 1031
SspMI CTAG 3 cut(s) 78, 816, 875
SstI GAGCTC 2 cut(s) 158, 375
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 7 cut(s) 32, 167, 605, 707, 829, 843, 1091
TaiI ACGT 3 cut(s) 295, 970, 1001
TaqI TCGA 8 cut(s) 184, 196, 201, 395, 505, 806, 915, 1098
TasI AATT 3 cut(s) 223, 343, 507
TatI WGTACW 3 cut(s) 32, 83, 318
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 314, 612, 903
Tru9I TTAA 3 cut(s) 314, 612, 903
TscAI CASTG 1 cut(s) 1094
TseFI GTSAC 4 cut(s) 134, 172, 707, 1055
TseI GCWGC 4 cut(s) 284, 308, 569, 590
Tsp45I GTSAC 4 cut(s) 134, 172, 707, 1055
TspDTI ATGAA 1 cut(s) 846
TspGWI ACGGA 2 cut(s) 148, 947
TspRI CASTG 1 cut(s) 1094
XhoI CTCGAG 1 cut(s) 914
XmiI GTMKAC 2 cut(s) 162, 970
XspI CTAG 3 cut(s) 78, 816, 875
ZrmI AGTACT 3 cut(s) 34, 85, 320
Zsp2I ATGCAT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.