MD16G1258700.v1.1

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
31298201 .. 31300766
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1258700.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGGCAAAGTTATCTCATCAAAACCAGAAACTCAATGCAAACAATAACACTAATGCTACTGCAGCTAATAACACTACTGTCACAAAGGTCAAACGAACAAGGAGAAGTGTCCCAAGGGACTCCCCTCCTCAACGTAGCTCAATTTATCGTGGGGTCACCAGGCACAGATGGACTGGCCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAAACACAAAACAAGAAGGGCCGCCAAGGCGCCTATGATGATGAGGAAGCTGCAGCACATGCTTATGACTTAGCAGCTCTTAAGTACTGGGGTCAAGATACCATTCTTAACTTTCCGGTATCGACATATCCAAAAGAACTGAAAGAAATGGAAGGTCAATCAAGAGAGGAATATATTGGATCATTGAGAAGGAAGAGCAGTGGTTTTTCTCGGGGAGTTTCGAAGTATAGAGGTGTTGCAAGACATCATCACAACGGACGATGGGAAGCTCGAATTGGACGAGTCTTTGGAAACAAGTACCTCTATCTCGGGACATATGCTACCCAAGAAGAAGCCGCAACAGCATATGATATGGCGGCTATAGAGTACCGTGGGCTCAATGCCGTCACAAACTTTGACCTCAGCCGTTACATCAAATGGCTAAAACCTAATGGTCCTAACAACAGCGAAAATTCCGGTCAGCCTAACACTACTATTGAGGCTAAATTGCCCAATGTCGCCCGAAACCCTATCGATCATGATCGTGGGCTTAGCTTCTTTCACAACCTTGCATATAGTCCGGCGGAAACCATGACCACGGCTCAGCCTAGACCAACCACTGCCACATCAGCCCTAGGGCTCCTTCTTCAGTCGTCAAAGTTCAAGGAGATGATGGAAATGACAACAGCCACCGATTTGTCATCGCAGCCGGAGTTGAGCACACCACAGTGCACATTTCCCGATGACATACAAACTTACTTTGACTGCCAAGATTCTAGCAGCTACGCTGAGGGAGACGACGTTATTTTCAGTGAGCTCAATTCATTCATGACACCCATGTTCCAGTGTGACTTCACCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

353

Amino Acids

39.88

Weight (kDa)

8.5

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 49 - 103 3.1e-07 AP2 domain
AP2 PF00847 146 - 197 2e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 4 cut(s) 238, 552, 572, 779
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 1 cut(s) 827
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 3 cut(s) 302, 515, 584
AfiI CCNNNNNNNGG 1 cut(s) 184
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 859
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AleI CACNNNNGTG 1 cut(s) 922
AluBI AGCT 8 cut(s) 65, 138, 266, 293, 485, 750, 978, 1012
AluI AGCT 8 cut(s) 65, 138, 266, 293, 485, 750, 978, 1012
Alw21I GWGCWC 3 cut(s) 917, 929, 1014
Alw26I GTCTC 1 cut(s) 984
Alw44I GTGCAC 1 cut(s) 925
AlwI GGATC 1 cut(s) 403
Ama87I CYCGRG 2 cut(s) 426, 524
AoxI GGCC 2 cut(s) 175, 235
ApaLI GTGCAC 1 cut(s) 925
ApeKI GCWGC 6 cut(s) 62, 266, 269, 290, 901, 975
ApoI RAATTY 1 cut(s) 667
AspA2I CCTAGG 1 cut(s) 829
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 235, 650
AsuHPI GGTGA 2 cut(s) 148, 1042
AsuII TTCGAA 1 cut(s) 437
AvaI CYCGRG 2 cut(s) 426, 524
AvaII GGWCC 1 cut(s) 650
AvrII CCTAGG 1 cut(s) 829
BaeGI GKGCMC 1 cut(s) 929
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 3 cut(s) 594, 837, 1014
Bbv12I GWGCWC 3 cut(s) 917, 929, 1014
BbvCI CCTCAGC 2 cut(s) 617, 984
BbvI GCAGC 6 cut(s) 74, 253, 281, 302, 913, 987
BccI CCATC 3 cut(s) 162, 471, 862
BceAI ACGGC 3 cut(s) 584, 606, 810
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 984
BfaI CTAG 3 cut(s) 804, 830, 972
BfmI CTRYAG 3 cut(s) 60, 267, 576
BfoI RGCGCY 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 9 cut(s) 63, 238, 267, 270, 291, 552, 573, 902, 976
BlnI CCTAGG 1 cut(s) 829
BlpI GCTNAGC 2 cut(s) 746, 798
BlsI GCNGC 9 cut(s) 64, 239, 268, 271, 292, 553, 574, 903, 977
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 650
BmeT110I CYCGRG 2 cut(s) 426, 524
BmgT120I GGNCC 2 cut(s) 235, 650
BmiI GGNNCC 2 cut(s) 247, 836
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
Bpu10I CCTNAGC 2 cut(s) 617, 984
Bpu1102I GCTNAGC 2 cut(s) 746, 798
Bpu14I TTCGAA 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 113, 241, 586, 792, 829
BsaWI WCCGGW 2 cut(s) 331, 671
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 3 cut(s) 178, 308, 1039
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 1 cut(s) 160
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 5 cut(s) 113, 241, 586, 792, 829
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 631, 812, 975
BseNI ACTGG 3 cut(s) 178, 308, 1039
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 929
BseXI GCAGC 6 cut(s) 74, 253, 281, 302, 913, 987
BshFI GGCC 2 cut(s) 177, 237
BshNI GGYRCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 729
BsiHKAI GWGCWC 3 cut(s) 917, 929, 1014
BsiHKCI CYCGRG 2 cut(s) 426, 524
BsiSI CCGG 4 cut(s) 332, 672, 776, 905
BslFI GGGAC 3 cut(s) 95, 131, 541
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 984
BsmBI CGTCTC 1 cut(s) 984
BsmFI GGGAC 3 cut(s) 95, 131, 541
BsnI GGCC 2 cut(s) 177, 237
BsoBI CYCGRG 2 cut(s) 426, 524
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 5 cut(s) 594, 837, 917, 929, 1014
Bsp143I GATC 3 cut(s) 395, 730, 736
Bsp1720I GCTNAGC 2 cut(s) 746, 798
BspACI CCGC 4 cut(s) 238, 552, 572, 779
BspANI GGCC 2 cut(s) 177, 237
BspCNI CTCAG 3 cut(s) 630, 811, 976
BspDI ATCGAT 1 cut(s) 729
BspHI TCATGA 2 cut(s) 733, 1023
BspLI GGNNCC 2 cut(s) 247, 836
BspMAI CTGCAG 2 cut(s) 64, 271
BspPI GGATC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 245
BspTI CTTAAG 1 cut(s) 296
BsrI ACTGG 3 cut(s) 178, 308, 1039
BssECI CCNNGG 5 cut(s) 113, 241, 586, 792, 829
BssMI GATC 3 cut(s) 395, 730, 736
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 3 cut(s) 113, 241, 829
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 79, 587, 924
Bst6I CTCTTC 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 246
BstAFI CTTAAG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 437
BstDEI CTNAG 5 cut(s) 286, 617, 746, 798, 984
BstDSI CCRYGG 2 cut(s) 586, 792
BstEII GGTNACC 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 3 cut(s) 398, 733, 739
BstMAI GTCTC 1 cut(s) 984
BstMBI GATC 3 cut(s) 395, 730, 736
BstMWI GCNNNNNNNGC 5 cut(s) 62, 243, 275, 557, 824
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 3 cut(s) 60, 267, 576
BstSLI GKGCMC 1 cut(s) 929
BstV1I GCAGC 6 cut(s) 74, 253, 281, 302, 913, 987
Bsu15I ATCGAT 1 cut(s) 729
BsuRI GGCC 2 cut(s) 177, 237
BsuTUI ATCGAT 1 cut(s) 729
BtgI CCRYGG 2 cut(s) 586, 792
BtgZI GCGATG 1 cut(s) 882
BtsI GCAGTG 2 cut(s) 421, 813
BtsIMutI CAGTG 5 cut(s) 421, 813, 929, 1012, 1046
CciI TCATGA 2 cut(s) 733, 1023
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 235, 650
ClaI ATCGAT 1 cut(s) 729
Csp6I GTAC 3 cut(s) 301, 514, 583
CviAII CATG 5 cut(s) 275, 734, 787, 1024, 1033
CviQI GTAC 3 cut(s) 301, 514, 583
DdeI CTNAG 5 cut(s) 286, 617, 746, 798, 984
DinI GGCGCC 1 cut(s) 247
DpnI GATC 3 cut(s) 397, 732, 738
DpnII GATC 3 cut(s) 395, 730, 736
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
EciI GGCGGA 1 cut(s) 794
Ecl136II GAGCTC 1 cut(s) 1012
Eco130I CCWWGG 3 cut(s) 113, 241, 829
Eco24I GRGCYC 3 cut(s) 594, 837, 1014
Eco47I GGWCC 1 cut(s) 650
Eco53kI GAGCTC 1 cut(s) 1012
Eco57I CTGAAG 1 cut(s) 827
Eco88I CYCGRG 2 cut(s) 426, 524
Eco91I GGTNACC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 1012
EcoO65I GGTNACC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 3 cut(s) 113, 241, 829
EcoT38I GRGCYC 3 cut(s) 594, 837, 1014
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 3 cut(s) 113, 241, 829
Esp3I CGTCTC 1 cut(s) 984
FaeI CATG 5 cut(s) 278, 737, 790, 1027, 1036
FaqI GGGAC 3 cut(s) 95, 131, 541
FatI CATG 5 cut(s) 274, 733, 786, 1023, 1032
FauNDI CATATG 2 cut(s) 532, 562
Fnu4HI GCNGC 9 cut(s) 63, 238, 267, 270, 291, 552, 573, 902, 976
FriOI GRGCYC 3 cut(s) 594, 837, 1014
Fsp4HI GCNGC 9 cut(s) 63, 238, 267, 270, 291, 552, 573, 902, 976
FspBI CTAG 3 cut(s) 804, 830, 972
GlaI GCGC 1 cut(s) 247
GluI GCNGC 9 cut(s) 63, 238, 267, 270, 291, 552, 573, 902, 976
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 2 cut(s) 177, 237
HapII CCGG 4 cut(s) 332, 672, 776, 905
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 5 cut(s) 278, 737, 790, 1027, 1036
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 3 cut(s) 119, 498, 968
HpaII CCGG 4 cut(s) 332, 672, 776, 905
HphI GGTGA 2 cut(s) 148, 1042
Hpy166II GTNNAC 1 cut(s) 927
Hpy188III TCNNGA 6 cut(s) 311, 378, 526, 734, 935, 1024
Hpy8I GTNNAC 1 cut(s) 927
Hpy99I CGWCG 1 cut(s) 998
HpyAV CCTTC 4 cut(s) 226, 362, 399, 848
HpyCH4III ACNGT 3 cut(s) 79, 587, 924
HpyCH4IV ACGT 2 cut(s) 133, 996
HpyCH4V TGCA 6 cut(s) 38, 62, 269, 455, 767, 927
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 243, 275, 557, 824
HpyF3I CTNAG 5 cut(s) 286, 617, 746, 798, 984
HpySE526I ACGT 2 cut(s) 133, 996
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 5 cut(s) 278, 737, 790, 1027, 1036
HspAI GCGC 1 cut(s) 246
KasI GGCGCC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 395, 730, 736
LguI GCTCTTC 1 cut(s) 404
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 6 cut(s) 74, 253, 281, 302, 913, 987
MaeI CTAG 3 cut(s) 804, 830, 972
MaeII ACGT 2 cut(s) 133, 996
MaeIII GTNAC 5 cut(s) 79, 154, 601, 623, 1043
MalI GATC 3 cut(s) 397, 732, 738
MboI GATC 3 cut(s) 395, 730, 736
MboII GAAGA 3 cut(s) 421, 557, 833
MhlI GDGCHC 5 cut(s) 594, 837, 917, 929, 1014
MluCI AATT 6 cut(s) 141, 205, 489, 667, 701, 1015
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 2 cut(s) 113, 507
MseI TTAA 3 cut(s) 297, 324, 1057
MslI CAYNNNNRTG 3 cut(s) 279, 738, 922
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 4 cut(s) 332, 672, 776, 905
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 5 cut(s) 62, 243, 275, 557, 824
NarI GGCGCC 1 cut(s) 246
NdeI CATATG 2 cut(s) 532, 562
NdeII GATC 3 cut(s) 395, 730, 736
NlaIII CATG 5 cut(s) 278, 737, 790, 1027, 1036
NlaIV GGNNCC 2 cut(s) 247, 836
NmuCI GTSAC 4 cut(s) 79, 154, 601, 1043
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 1 cut(s) 437
OliI CACNNNNGTG 1 cut(s) 922
PagI TCATGA 2 cut(s) 733, 1023
PciSI GCTCTTC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PfeI GAWTC 1 cut(s) 968
PkrI GCNGC 9 cut(s) 64, 239, 268, 271, 292, 553, 574, 903, 977
PleI GAGTC 2 cut(s) 113, 506
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 2 cut(s) 113, 506
Psp124BI GAGCTC 1 cut(s) 1014
Psp6I CCWGG 1 cut(s) 158
PspEI GGTNACC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 247, 836
PspPI GGNCC 2 cut(s) 235, 650
PstI CTGCAG 2 cut(s) 64, 271
RsaI GTAC 3 cut(s) 302, 515, 584
RsaNI GTAC 3 cut(s) 301, 514, 583
RseI CAYNNNNRTG 3 cut(s) 279, 738, 922
SacI GAGCTC 1 cut(s) 1014
SapI GCTCTTC 1 cut(s) 404
SaqAI TTAA 3 cut(s) 297, 324, 1057
SatI GCNGC 9 cut(s) 63, 238, 267, 270, 291, 552, 573, 902, 976
Sau3AI GATC 3 cut(s) 395, 730, 736
Sau96I GGNCC 2 cut(s) 235, 650
ScaI AGTACT 1 cut(s) 302
SchI GAGTC 2 cut(s) 113, 507
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 5 cut(s) 594, 837, 917, 929, 1014
SfcI CTRYAG 3 cut(s) 60, 267, 576
SfoI GGCGCC 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 3 cut(s) 279, 738, 922
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 6 cut(s) 141, 205, 489, 667, 701, 1015
SsiI CCGC 4 cut(s) 238, 552, 572, 779
SspDI GGCGCC 1 cut(s) 245
SspMI CTAG 3 cut(s) 804, 830, 972
SstI GAGCTC 1 cut(s) 1014
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 3 cut(s) 113, 241, 829
TaaI ACNGT 3 cut(s) 79, 587, 924
TaiI ACGT 2 cut(s) 136, 999
TaqI TCGA 4 cut(s) 338, 437, 487, 729
TasI AATT 6 cut(s) 141, 205, 489, 667, 701, 1015
TatI WGTACW 1 cut(s) 300
TauI GCSGC 3 cut(s) 240, 554, 575
TfiI GAWTC 1 cut(s) 968
Tru1I TTAA 3 cut(s) 297, 324, 1057
Tru9I TTAA 3 cut(s) 297, 324, 1057
TscAI CASTG 5 cut(s) 421, 820, 929, 1012, 1046
TseFI GTSAC 4 cut(s) 79, 154, 601, 1043
TseI GCWGC 6 cut(s) 62, 266, 269, 290, 901, 975
Tsp45I GTSAC 4 cut(s) 79, 154, 601, 1043
TspDTI ATGAA 3 cut(s) 231, 1008, 1012
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 5 cut(s) 421, 820, 929, 1012, 1046
Vha464I CTTAAG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 1 cut(s) 667
XceI RCATGY 1 cut(s) 278
XmaJI CCTAGG 1 cut(s) 829
XspI CTAG 3 cut(s) 804, 830, 972
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.